Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003673

Physical Location & Seq

Genomic Coordinates Reverse (-)

24095072 .. 24099291

Gene Structure 4220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30910.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGATTGAGACGTGTTATGGTAAAGCTGGGAATGTTTTTCCAATTAGGCTGGCTAACTGGGCACATGTGCATTTTGGTGTAGTTTTTGATTACAAGCATTTGAGTGGGTCTTTTGCCATGTCTCATTCCAAGAATGGTGCTAATAAGCCCGGTACCCGAAACCTTCCTTCTTGGATGAGTTCAAGAGACAATGAGAGTGACAAGAAGCCGAATGGGGATGGTGAAGGTGAGGGTCAGAAGCCCAGGCAAGGGAGAGGGCGCGCAAGCGGCAACAGTTCTGGTGAATCCAGCTCGGGAGCAACTAACGTGTCGAAACTTTTGGAAGGGGTTGTGTTTGTATTGTCTGGGTTTGTTAATCCGGAGCGCAGCATTTTGCGGTCACAGGCATTGGAAATGGGAGCAGAATATCAGCCTGATTGGAATTCAGATTGCACTCTCTTGGTTTGTGCTTTTTCAAACACCCCTAAGTTTCGACAAGTTGAGGCAGAATGTGGAACTATTGTTTCAAAGGAATGGATATCAGAGTGTTACACGCAGAAGAAGCTTGTTGATATAGAAAGTTACCTTATGCATGCTGGGAAACCCTGGCGTAAAAGCAGTGTTTCCCAGGACAACAGGCAGGACCAAAGATTATCCCGGCCTAGTATATCTAAAAAGCAAGATGGAGATTCTCCTTCAAAACCAACTGCCTCTGCAACTTTAAAGCATGTTAAAGCTGATGTCTCTGTTAAAGAGTGCTTTTCTCCATCCGAAGTGAAGAAGTGGGCTGTCGATGATTTGAAGAAGACGATATCATGGCTGGAGAGTCAAGAAGAAAAGCCAGATCCAGATGAGATAAAGCAGATAGCAGCTGAAGGGATTTTAACTTGTTTACAAGATGCGATAGCTTCTCTGGAACAAAAACAGGATGTCCAGCAAATAACTGAACAATGGAATTTCGTTCCTCGTGTAGTCGAAGAGCTTGCAAAGCACGAAATCAAAGGAAACAACTCTGTGGCCATACCGAAGGAAGATCTTTGCAGACAGGCTATGGCCTGTAAACAAATTTATGAGGTGGAACTATATAATTTGGATGATGATTCTTCAAGGAAGAAAAAACGAAAGACTGATAGGCAAGAGGACAAAGGGGAAACCGTAGCCTTATGCAGAGGTGCAGCAGGATATGACAGTGATGAAACAGTTGAGATGACAGAAGAGGAAATAGATCTTGCATATGATACTTTAGCTTCCAATAATACAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006284 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009987 GO:0010033 GO:0010385 GO:0010562 GO:0010604 GO:0010921 GO:0010922 GO:0019219 GO:0019220 GO:0019222 GO:0031323 GO:0031325 GO:0033554 GO:0034641 GO:0035303 GO:0035306 GO:0035510 GO:0036293 GO:0042221 GO:0042493 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045935 GO:0045937 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070482 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901968 GO:1901969 GO:1901971 GO:1901972 GO:1902544 GO:1902546

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

BRCT PTCB-BRCT

Protein Analysis

415

Amino Acids

46.07

Weight (kDa)

5.51

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80420 AT1G80420 AT1G80420 AT1G80420 AT1G80420
fragaria_vesca	FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910
malus_domestica	MD17G1197800.v1.1
prunus_persica	Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1
pyrus_communis	pycom17g20270
rosa_chinensis	RchiOBHm_Chr2g0137421
rosa_laevigata	RLG00000019657
rosa_multiflora	Rmu_sc0000765.1_g000002 Rmu_ssc0000312.1_g000013
rosa_roxburghii	Rroxscaffold_2G00107070
rosa_rugosa	Rorug02G0342300 Rorug02G0342400 Rorug02G0342400 Rorug02G0342500
rosa_samantha	Rh2AG390400 Rh2BG397800 Rh2CG377700 Rh2DG413100
rosa_wichuraiana	Rw0G004550 Rw2G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	152
AccII	CGCG	1 cut(s)	261
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	2 cut(s)	267, 376
AclWI	GGATC	1 cut(s)	818
AcoI	YGGCCR	1 cut(s)	996
AcsI	RAATTY	3 cut(s)	421, 934, 1044
AcuI	CTGAAG	1 cut(s)	873
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	248, 249
AflIII	ACRYGT	3 cut(s)	11, 64, 306
AgsI	TTSAA	6 cut(s)	183, 456, 507, 678, 781, 1086
AjiI	CACGTC	1 cut(s)	12
AjnI	CCWGG	3 cut(s)	242, 584, 606
AluBI	AGCT	8 cut(s)	26, 291, 544, 716, 851, 887, 961, 1226
AluI	AGCT	8 cut(s)	26, 291, 544, 716, 851, 887, 961, 1226
Alw26I	GTCTC	4 cut(s)	2, 126, 180, 727
AlwI	GGATC	1 cut(s)	818
Ama87I	CYCGRG	1 cut(s)	292
Aor13HI	TCCGGA	1 cut(s)	358
AoxI	GGCC	3 cut(s)	638, 996, 1032
ApeKI	GCWGC	3 cut(s)	366, 848, 1154
ApoI	RAATTY	3 cut(s)	421, 934, 1044
Asp718I	GGTACC	1 cut(s)	152
AspLEI	GCGC	3 cut(s)	261, 263, 366
AspS9I	GGNCC	1 cut(s)	622
AsuC2I	CCSGG	2 cut(s)	150, 637
AsuHPI	GGTGA	3 cut(s)	233, 239, 293
AvaI	CYCGRG	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	998
BanI	GGYRCC	1 cut(s)	152
BauI	CACGAG	1 cut(s)	945
BbsI	GAAGAC	1 cut(s)	791
BbvI	GCAGC	3 cut(s)	378, 860, 1166
BccI	CCATC	3 cut(s)	212, 656, 754
BcgI	CGANNNNNNTGC	2 cut(s)	944, 978
BciT130I	CCWGG	3 cut(s)	244, 586, 608
BcnI	CCSGG	2 cut(s)	150, 637
BcoDI	GTCTC	4 cut(s)	2, 126, 180, 727
BfaI	CTAG	1 cut(s)	642
BglII	AGATCT	2 cut(s)	1012, 1204
BisI	GCNGC	4 cut(s)	268, 367, 849, 1155
BlsI	GCNGC	4 cut(s)	269, 368, 850, 1156
Bme1390I	CCNGG	5 cut(s)	150, 244, 586, 608, 637
Bme18I	GGWCC	1 cut(s)	622
BmeT110I	CYCGRG	1 cut(s)	292
BmgBI	CACGTC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	5 cut(s)	150, 244, 586, 608, 637
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	868
BmuI	ACTGGG	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	791
BpmI	CTGGAG	1 cut(s)	821
BpuMI	CCSGG	2 cut(s)	150, 637
BsaJI	CCNNGG	3 cut(s)	242, 584, 606
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 249
Bse1I	ACTGG	1 cut(s)	62
BseAI	TCCGGA	1 cut(s)	358
BseBI	CCWGG	3 cut(s)	244, 586, 608
BseDI	CCNNGG	3 cut(s)	242, 584, 606
BseGI	GGATG	5 cut(s)	180, 223, 746, 913, 1078
BseLI	CCNNNNNNNGG	2 cut(s)	248, 249
BseNI	ACTGG	1 cut(s)	62
BsePI	GCGCGC	1 cut(s)	259
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	3 cut(s)	378, 860, 1166
BseYI	CCCAGC	2 cut(s)	26, 575
BsgI	GTGCAG	1 cut(s)	1173
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	640, 998, 1034
BshNI	GGYRCC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	3 cut(s)	150, 359, 637
BslI	CCNNNNNNNGG	2 cut(s)	248, 249
BsmAI	GTCTC	4 cut(s)	2, 126, 180, 727
BsmBI	CGTCTC	1 cut(s)	2
BsnI	GGCC	3 cut(s)	640, 998, 1034
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	823, 1012, 1204
BspACI	CCGC	2 cut(s)	267, 376
BspANI	GGCC	3 cut(s)	640, 998, 1034
BspEI	TCCGGA	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	818
BspQI	GCTCTTC	1 cut(s)	951
BspT107I	GGYRCC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	242, 584, 606
BssHII	GCGCGC	1 cut(s)	259
BssMI	GATC	3 cut(s)	823, 1012, 1204
BssSI	CACGAG	1 cut(s)	945
Bst2BI	CACGAG	1 cut(s)	945
Bst2UI	CCWGG	3 cut(s)	244, 586, 608
Bst4CI	ACNGT	5 cut(s)	275, 1135, 1169, 1180, 1240
Bst6I	CTCTTC	2 cut(s)	951, 1188
BstC8I	GCNNGC	5 cut(s)	51, 261, 265, 573, 963
BstDEI	CTNAG	1 cut(s)	465
BstF5I	GGATG	5 cut(s)	180, 223, 746, 913, 1078
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	3 cut(s)	261, 263, 366
BstKTI	GATC	3 cut(s)	826, 1015, 1207
BstMAI	GTCTC	4 cut(s)	2, 126, 180, 727
BstMBI	GATC	3 cut(s)	823, 1012, 1204
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 267, 541, 967
BstNI	CCWGG	3 cut(s)	244, 586, 608
BstNSI	RCATGY	3 cut(s)	68, 575, 710
BstSCI	CCNGG	5 cut(s)	148, 242, 584, 606, 635
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	378, 860, 1166
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	3 cut(s)	823, 1012, 1204
BstYI	RGATCY	3 cut(s)	823, 1012, 1204
BsuRI	GGCC	3 cut(s)	640, 998, 1034
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	5 cut(s)	180, 223, 746, 913, 1078
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	3 cut(s)	604, 1174, 1245
Cac8I	GCNNGC	5 cut(s)	51, 261, 265, 573, 963
CfoI	GCGC	3 cut(s)	261, 263, 366
Cfr13I	GGNCC	1 cut(s)	622
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	5 cut(s)	65, 118, 572, 707, 795
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	3 cut(s)	825, 1014, 1206
DpnII	GATC	3 cut(s)	823, 1012, 1204
DraI	TTTAAA	1 cut(s)	702
EaeI	YGGCCR	1 cut(s)	996
Eam1104I	CTCTTC	2 cut(s)	951, 1188
EarI	CTCTTC	2 cut(s)	951, 1188
Eco32I	GATATC	2 cut(s)	519, 792
Eco47I	GGWCC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	873
Eco88I	CYCGRG	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	3 cut(s)	242, 584, 606
EcoRV	GATATC	2 cut(s)	519, 792
EcoT22I	ATGCAT	1 cut(s)	573
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	5 cut(s)	68, 121, 575, 710, 798
FatI	CATG	5 cut(s)	64, 117, 571, 706, 794
FauNDI	CATATG	1 cut(s)	1213
Fnu4HI	GCNGC	4 cut(s)	268, 367, 849, 1155
FokI	GGATG	5 cut(s)	187, 230, 733, 920, 1085
Fsp4HI	GCNGC	4 cut(s)	268, 367, 849, 1155
FspBI	CTAG	1 cut(s)	642
GlaI	GCGC	3 cut(s)	260, 262, 365
GluI	GCNGC	4 cut(s)	268, 367, 849, 1155
GsaI	CCCAGC	2 cut(s)	30, 579
GsuI	CTGGAG	1 cut(s)	821
HaeIII	GGCC	3 cut(s)	640, 998, 1034
HapII	CCGG	3 cut(s)	150, 359, 637
HhaI	GCGC	3 cut(s)	261, 263, 366
Hin1II	CATG	5 cut(s)	68, 121, 575, 710, 798
Hin6I	GCGC	3 cut(s)	259, 261, 364
HinP1I	GCGC	3 cut(s)	259, 261, 364
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	4 cut(s)	284, 668, 805, 1079
HpaII	CCGG	3 cut(s)	150, 359, 637
HphI	GGTGA	3 cut(s)	233, 239, 293
Hpy166II	GTNNAC	2 cut(s)	872, 1040
Hpy188I	TCNGA	4 cut(s)	237, 427, 523, 751
Hpy188III	TCNNGA	6 cut(s)	183, 294, 359, 809, 827, 893
Hpy8I	GTNNAC	2 cut(s)	872, 1040
HpyAV	CCTTC	7 cut(s)	173, 177, 218, 317, 684, 848, 1000
HpyCH4III	ACNGT	5 cut(s)	275, 1135, 1169, 1180, 1240
HpyCH4IV	ACGT	2 cut(s)	11, 306
HpyCH4V	TGCA	9 cut(s)	70, 432, 571, 695, 965, 1020, 1146, 1154, 1211
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 267, 541, 967
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	2 cut(s)	11, 306
Hsp92II	CATG	5 cut(s)	68, 121, 575, 710, 798
HspAI	GCGC	3 cut(s)	259, 261, 364
Kpn2I	TCCGGA	1 cut(s)	358
KpnI	GGTACC	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	823, 1012, 1204
LguI	GCTCTTC	1 cut(s)	951
LmnI	GCTCC	3 cut(s)	296, 361, 398
Lsp1109I	GCAGC	3 cut(s)	378, 860, 1166
LweI	GCATC	1 cut(s)	868
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	2 cut(s)	11, 306
MaeIII	GTNAC	4 cut(s)	197, 378, 527, 560
MalI	GATC	3 cut(s)	825, 1014, 1206
MboI	GATC	3 cut(s)	823, 1012, 1204
MflI	RGATCY	3 cut(s)	823, 1012, 1204
MhlI	GDGCHC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	998
MluCI	AATT	5 cut(s)	42, 421, 934, 1044, 1066
MluNI	TGGCCA	1 cut(s)	998
MlyI	GAGTC	1 cut(s)	814
MnlI	CCTC	9 cut(s)	223, 248, 475, 700, 954, 1045, 1111, 1142, 1189
Mox20I	TGGCCA	1 cut(s)	998
Mph1103I	ATGCAT	1 cut(s)	573
MroI	TCCGGA	1 cut(s)	358
MscI	TGGCCA	1 cut(s)	998
MseI	TTAA	5 cut(s)	354, 701, 711, 729, 863
MslI	CAYNNNNRTG	2 cut(s)	75, 102
Msp20I	TGGCCA	1 cut(s)	998
MspA1I	CMGCKG	1 cut(s)	851
MspI	CCGG	3 cut(s)	150, 359, 637
MspR9I	CCNGG	5 cut(s)	150, 244, 586, 608, 637
MvaI	CCWGG	3 cut(s)	244, 586, 608
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	4 cut(s)	59, 267, 541, 967
NciI	CCSGG	2 cut(s)	150, 637
NdeI	CATATG	1 cut(s)	1213
NdeII	GATC	3 cut(s)	823, 1012, 1204
NlaIII	CATG	5 cut(s)	68, 121, 575, 710, 798
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	2 cut(s)	197, 378
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	3 cut(s)	68, 575, 710
PaeI	GCATGC	1 cut(s)	575
PauI	GCGCGC	1 cut(s)	259
PciI	ACATGT	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	951
PfeI	GAWTC	3 cut(s)	284, 668, 1079
PkrI	GCNGC	4 cut(s)	269, 368, 850, 1156
PleI	GAGTC	1 cut(s)	813
PpsI	GAGTC	1 cut(s)	813
PscI	ACATGT	1 cut(s)	64
Psp6I	CCWGG	3 cut(s)	242, 584, 606
PspFI	CCCAGC	2 cut(s)	26, 575
PspGI	CCWGG	3 cut(s)	242, 584, 606
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	622
PsuI	RGATCY	3 cut(s)	823, 1012, 1204
PteI	GCGCGC	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	2 cut(s)	75, 102
SapI	GCTCTTC	1 cut(s)	951
SaqAI	TTAA	5 cut(s)	354, 701, 711, 729, 863
SatI	GCNGC	4 cut(s)	268, 367, 849, 1155
Sau3AI	GATC	3 cut(s)	823, 1012, 1204
Sau96I	GGNCC	1 cut(s)	622
SchI	GAGTC	1 cut(s)	814
ScrFI	CCNGG	5 cut(s)	150, 244, 586, 608, 637
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	868
SinI	GGWCC	1 cut(s)	622
SmiMI	CAYNNNNRTG	2 cut(s)	75, 102
SphI	GCATGC	1 cut(s)	575
Sse9I	AATT	5 cut(s)	42, 421, 934, 1044, 1066
SsiI	CCGC	2 cut(s)	267, 376
SspMI	CTAG	1 cut(s)	642
StyD4I	CCNGG	5 cut(s)	148, 242, 584, 606, 635
TaaI	ACNGT	5 cut(s)	275, 1135, 1169, 1180, 1240
TaiI	ACGT	2 cut(s)	14, 309
TaqI	TCGA	4 cut(s)	311, 472, 771, 954
TasI	AATT	5 cut(s)	42, 421, 934, 1044, 1066
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	3 cut(s)	284, 668, 1079
Tru1I	TTAA	5 cut(s)	354, 701, 711, 729, 863
Tru9I	TTAA	5 cut(s)	354, 701, 711, 729, 863
TscAI	CASTG	3 cut(s)	604, 1174, 1245
TseFI	GTSAC	2 cut(s)	197, 378
TseI	GCWGC	3 cut(s)	366, 848, 1154
Tsp45I	GTSAC	2 cut(s)	197, 378
TspDTI	ATGAA	1 cut(s)	1188
TspRI	CASTG	3 cut(s)	604, 1174, 1245
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	3 cut(s)	421, 934, 1044
XceI	RCATGY	3 cut(s)	68, 575, 710
XspI	CTAG	1 cut(s)	642
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.