Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003673

Physical Location & Seq

Genomic Coordinates Reverse (-)

58581814 .. 58585221

Gene Structure 3408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG390400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCTCATTCCAAGAATGGCAACCGAAACCTTCCTTCGTGGATGAGTTCAAGAGACAATGAGAGTGAGTCTCCTGAAAAGAAACCAAATGGGGATGGGGCTGGTGAAGGTGAGGAAAGGAAGCCCACGCAAGGGAGAGCGCGCGGAAGCAGCAAGAATTCTGGTGCATCCAGCTCGGGAACAACAAATGTGTCCAAACTTCTGGAAGGGGTTGTGTTTGTACTATCTGGTTTTGTTAATCCTGAGCGCAGCATCTTACGGTCACAGGCATTGGAAATGGGAGCAGAATATCAGCCTGATTGGAGTTCAGATTGCACTCTCTTGGTTTGTGCGTTTTCAAATACCCCCAAGTTTCGTCAAGTTGAGGCAGATTGTGGAACTATTGTTTCAAAGGAATGGATATCAGAGTGTTACACACAGAAGAAGCTTGTTGATATAGAAAGTTACCTTATGCATGCTGGGAAACCCTGGCGTAAAAGCAGTGTTTCCCAGGACAACAGGCAAGACCAGAGATTATCCCGGCCTAGTAGATCTAAAAAGCAGGATGGAGATTCTCCTTCAAAACCAACTGCCTCTGCAACTTTAAAGCGTGTCAAAGCTACTGACTCTATTAGAGAGTGCTTTTCTCCATCTGAAGTGAAGAAGTGGGCAGTCGATGATTTGAAGAAGACGATATCATGGCTGGAGAGTCAAGAAGAAAAGCCAGACCCAGATGAGATAAAGCAGATAGCAGCTGAAGGGATTTTAACTTGTTTACAAGATGCCATAGCTTCTCTGGAACAAAAACAGGATGTCCAGCAGATAACTGAACAATGGAATTTCATTCCTCATGTAGTTGAGGAGCTTGCAAAGCTCGAAAGCACAGGAAATAACTCTGTGGCCATATCAAAGGAAGATCTTTGCAGACAGGCTATGGACTGTAAACGAATTTATGAGGTAGAACTTCATAATTTGGATGATGATTCTTCAAGGAAGAAAAAACAAAAGACTGGAAGACGAGAGAAGGACAAAGGGGAAACTGAAGCACTATGCAGCGGTGCAGCAGGATATGACAGTGATGAAACACTTGAGATGACAGAAGAGGAAATCGTTCTTGCATATAATACTATAGCTTCCAAGATCTCTAATACAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006284 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009987 GO:0010033 GO:0010385 GO:0010562 GO:0010604 GO:0010921 GO:0010922 GO:0019219 GO:0019220 GO:0019222 GO:0031323 GO:0031325 GO:0033554 GO:0034641 GO:0035303 GO:0035306 GO:0035510 GO:0036293 GO:0042221 GO:0042493 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045935 GO:0045937 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070482 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901968 GO:1901969 GO:1901971 GO:1901972 GO:1902544 GO:1902546

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

BRCT PTCB-BRCT

Protein Analysis

378

Amino Acids

42.08

Weight (kDa)

5.34

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	64 - 138	1.8e-10	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	66 - 149	5.6e-06	BRCT domain
PTCB-BRCT	PF12738	72 - 120	2.7e-07	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80420 AT1G80420 AT1G80420 AT1G80420 AT1G80420
fragaria_vesca	FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910
malus_domestica	MD17G1197800.v1.1
prunus_persica	Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1
pyrus_communis	pycom17g20270
rosa_chinensis	RchiOBHm_Chr2g0137421
rosa_laevigata	RLG00000019657
rosa_multiflora	Rmu_sc0000765.1_g000002 Rmu_ssc0000312.1_g000013
rosa_roxburghii	Rroxscaffold_2G00107070
rosa_rugosa	Rorug02G0342300 Rorug02G0342400 Rorug02G0342400 Rorug02G0342500
rosa_samantha	Rh2AG390400 Rh2BG397800 Rh2CG377700 Rh2DG413100
rosa_wichuraiana	Rw0G004550 Rw2G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	142, 144
AciI	CCGC	2 cut(s)	144, 1035
AcoI	YGGCCR	1 cut(s)	879
AcsI	RAATTY	3 cut(s)	157, 817, 927
AcuI	CTGAAG	3 cut(s)	654, 756, 1041
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	131, 132
AgsI	TTSAA	6 cut(s)	51, 339, 390, 561, 664, 969
AjnI	CCWGG	2 cut(s)	467, 489
AluBI	AGCT	8 cut(s)	174, 427, 599, 734, 770, 844, 853, 1112
AluI	AGCT	8 cut(s)	174, 427, 599, 734, 770, 844, 853, 1112
Alw26I	GTCTC	3 cut(s)	9, 48, 75
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	521, 879
ApeKI	GCWGC	5 cut(s)	150, 249, 731, 1032, 1040
ApoI	RAATTY	3 cut(s)	157, 817, 927
Asp700I	GAANNNNTTC	1 cut(s)	1089
AspLEI	GCGC	3 cut(s)	142, 144, 249
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	2 cut(s)	116, 122
AvaI	CYCGRG	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	881
BbsI	GAAGAC	2 cut(s)	674, 1000
BbvI	GCAGC	5 cut(s)	162, 261, 743, 1044, 1052
BccI	CCATC	3 cut(s)	89, 539, 637
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BciT130I	CCWGG	2 cut(s)	469, 491
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	3 cut(s)	9, 48, 75
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	1 cut(s)	1107
BglII	AGATCT	3 cut(s)	530, 895, 1119
BisI	GCNGC	5 cut(s)	151, 250, 732, 1033, 1041
BlsI	GCNGC	5 cut(s)	152, 251, 733, 1034, 1042
Bme1390I	CCNGG	3 cut(s)	469, 491, 520
BmeT110I	CYCGRG	1 cut(s)	175
BmrFI	CCNGG	3 cut(s)	469, 491, 520
BmsI	GCATC	3 cut(s)	176, 261, 751
BpiI	GAAGAC	2 cut(s)	674, 1000
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	1088
BpuMI	CCSGG	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	467, 489
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 132
Bse1I	ACTGG	1 cut(s)	994
BseBI	CCWGG	2 cut(s)	469, 491
BseDI	CCNNGG	2 cut(s)	467, 489
BseGI	GGATG	6 cut(s)	48, 100, 167, 550, 796, 961
BseLI	CCNNNNNNNGG	2 cut(s)	131, 132
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	994
BsePI	GCGCGC	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	854
BseXI	GCAGC	5 cut(s)	162, 261, 743, 1044, 1052
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	1059
Bsh1236I	CGCG	2 cut(s)	142, 144
BshFI	GGCC	2 cut(s)	523, 881
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	520
BslI	CCNNNNNNNGG	2 cut(s)	131, 132
BsmAI	GTCTC	3 cut(s)	9, 48, 75
BsnI	GGCC	2 cut(s)	523, 881
BsoBI	CYCGRG	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	530, 895, 1119
BspACI	CCGC	2 cut(s)	144, 1035
BspANI	GGCC	2 cut(s)	523, 881
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	2 cut(s)	142, 144
BsrI	ACTGG	1 cut(s)	994
BssECI	CCNNGG	2 cut(s)	467, 489
BssHII	GCGCGC	1 cut(s)	140
BssMI	GATC	3 cut(s)	530, 895, 1119
Bst2UI	CCWGG	2 cut(s)	469, 491
Bst4CI	ACNGT	3 cut(s)	261, 920, 1055
Bst6I	CTCTTC	1 cut(s)	1074
BstC8I	GCNNGC	3 cut(s)	142, 456, 846
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	6 cut(s)	48, 100, 167, 550, 796, 961
BstFNI	CGCG	2 cut(s)	142, 144
BstHHI	GCGC	3 cut(s)	142, 144, 249
BstKTI	GATC	3 cut(s)	533, 898, 1122
BstMAI	GTCTC	3 cut(s)	9, 48, 75
BstMBI	GATC	3 cut(s)	530, 895, 1119
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 850
BstNI	CCWGG	2 cut(s)	469, 491
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	3 cut(s)	467, 489, 518
BstSFI	CTRYAG	1 cut(s)	1107
BstUI	CGCG	2 cut(s)	142, 144
BstV1I	GCAGC	5 cut(s)	162, 261, 743, 1044, 1052
BstV2I	GAAGAC	2 cut(s)	674, 1000
BstX2I	RGATCY	3 cut(s)	530, 895, 1119
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	3 cut(s)	530, 895, 1119
BsuRI	GGCC	2 cut(s)	523, 881
BtsCI	GGATG	6 cut(s)	48, 100, 167, 550, 796, 961
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	2 cut(s)	487, 1060
Cac8I	GCNNGC	3 cut(s)	142, 456, 846
CfoI	GCGC	3 cut(s)	142, 144, 249
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	3 cut(s)	455, 678, 830
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	532, 897, 1121
DpnII	GATC	3 cut(s)	530, 895, 1119
DraI	TTTAAA	1 cut(s)	585
EaeI	YGGCCR	1 cut(s)	879
Eam1104I	CTCTTC	1 cut(s)	1074
EarI	CTCTTC	1 cut(s)	1074
Eco32I	GATATC	2 cut(s)	402, 675
Eco57I	CTGAAG	3 cut(s)	654, 756, 1041
Eco88I	CYCGRG	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	467, 489
EcoRV	GATATC	2 cut(s)	402, 675
EcoT22I	ATGCAT	1 cut(s)	456
FaeI	CATG	3 cut(s)	458, 681, 833
FatI	CATG	3 cut(s)	454, 677, 829
Fnu4HI	GCNGC	5 cut(s)	151, 250, 732, 1033, 1041
FokI	GGATG	6 cut(s)	55, 107, 154, 557, 803, 968
Fsp4HI	GCNGC	5 cut(s)	151, 250, 732, 1033, 1041
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	3 cut(s)	141, 143, 248
GluI	GCNGC	5 cut(s)	151, 250, 732, 1033, 1041
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	2 cut(s)	523, 881
HapII	CCGG	1 cut(s)	520
HhaI	GCGC	3 cut(s)	142, 144, 249
Hin1II	CATG	3 cut(s)	458, 681, 833
Hin6I	GCGC	3 cut(s)	140, 142, 247
HinP1I	GCGC	3 cut(s)	140, 142, 247
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	5 cut(s)	68, 551, 605, 688, 962
HpaII	CCGG	1 cut(s)	520
HphI	GGTGA	2 cut(s)	116, 122
Hpy166II	GTNNAC	2 cut(s)	755, 923
Hpy188I	TCNGA	3 cut(s)	310, 406, 634
Hpy188III	TCNNGA	7 cut(s)	51, 74, 177, 203, 242, 692, 776
Hpy8I	GTNNAC	2 cut(s)	755, 923
HpyAV	CCTTC	7 cut(s)	41, 45, 101, 200, 567, 731, 997
HpyCH4III	ACNGT	3 cut(s)	261, 920, 1055
HpyCH4V	TGCA	9 cut(s)	167, 315, 454, 578, 848, 903, 1032, 1040, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 850
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	458, 681, 833
HspAI	GCGC	3 cut(s)	140, 142, 247
Kzo9I	GATC	3 cut(s)	530, 895, 1119
LmnI	GCTCC	2 cut(s)	281, 841
Lsp1109I	GCAGC	5 cut(s)	162, 261, 743, 1044, 1052
LweI	GCATC	3 cut(s)	176, 261, 751
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	3 cut(s)	261, 410, 443
MalI	GATC	3 cut(s)	532, 897, 1121
MboI	GATC	3 cut(s)	530, 895, 1119
MflI	RGATCY	3 cut(s)	530, 895, 1119
MlsI	TGGCCA	1 cut(s)	881
MluCI	AATT	4 cut(s)	157, 817, 927, 949
MluNI	TGGCCA	1 cut(s)	881
MlyI	GAGTC	3 cut(s)	77, 599, 697
MnlI	CCTC	7 cut(s)	106, 358, 583, 832, 837, 928, 1075
Mox20I	TGGCCA	1 cut(s)	881
Mph1103I	ATGCAT	1 cut(s)	456
MroXI	GAANNNNTTC	1 cut(s)	1089
MscI	TGGCCA	1 cut(s)	881
MseI	TTAA	3 cut(s)	237, 584, 746
Msp20I	TGGCCA	1 cut(s)	881
MspA1I	CMGCKG	2 cut(s)	734, 1035
MspI	CCGG	1 cut(s)	520
MspR9I	CCNGG	3 cut(s)	469, 491, 520
MvaI	CCWGG	2 cut(s)	469, 491
MvnI	CGCG	2 cut(s)	142, 144
MwoI	GCNNNNNNNGC	2 cut(s)	150, 850
NciI	CCSGG	1 cut(s)	520
NdeII	GATC	3 cut(s)	530, 895, 1119
NlaIII	CATG	3 cut(s)	458, 681, 833
NmuCI	GTSAC	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	1 cut(s)	458
PaeI	GCATGC	1 cut(s)	458
PauI	GCGCGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	1089
PfeI	GAWTC	2 cut(s)	551, 962
PkrI	GCNGC	5 cut(s)	152, 251, 733, 1034, 1042
PleI	GAGTC	3 cut(s)	76, 599, 696
PpsI	GAGTC	3 cut(s)	76, 599, 696
Psp6I	CCWGG	2 cut(s)	467, 489
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	2 cut(s)	467, 489
PsuI	RGATCY	3 cut(s)	530, 895, 1119
PteI	GCGCGC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	237, 584, 746
SatI	GCNGC	5 cut(s)	151, 250, 732, 1033, 1041
Sau3AI	GATC	3 cut(s)	530, 895, 1119
SchI	GAGTC	3 cut(s)	77, 599, 697
ScrFI	CCNGG	3 cut(s)	469, 491, 520
SfaNI	GCATC	3 cut(s)	176, 261, 751
SfcI	CTRYAG	1 cut(s)	1107
SmlI	CTYRAG	1 cut(s)	1067
SmoI	CTYRAG	1 cut(s)	1067
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	4 cut(s)	157, 817, 927, 949
SsiI	CCGC	2 cut(s)	144, 1035
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	3 cut(s)	467, 489, 518
TaaI	ACNGT	3 cut(s)	261, 920, 1055
TaqI	TCGA	2 cut(s)	654, 855
TasI	AATT	4 cut(s)	157, 817, 927, 949
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	551, 962
Tru1I	TTAA	3 cut(s)	237, 584, 746
Tru9I	TTAA	3 cut(s)	237, 584, 746
TscAI	CASTG	2 cut(s)	487, 1060
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	5 cut(s)	150, 249, 731, 1032, 1040
Tsp45I	GTSAC	1 cut(s)	261
TspDTI	ATGAA	3 cut(s)	811, 935, 1074
TspRI	CASTG	2 cut(s)	487, 1060
XapI	RAATTY	3 cut(s)	157, 817, 927
XceI	RCATGY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	772
XmnI	GAANNNNTTC	1 cut(s)	1089
XspI	CTAG	1 cut(s)	525
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.