Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003673

Physical Location & Seq

Genomic Coordinates Forward (+)

5328956 .. 5332461

Gene Structure 3506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G073900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCTCATTCGAAAACAAGCCAGGGTGATGGTTCCAATAATGCTGGGAAGCGAAACCTTCCTTCATGGATGAGTTCAAGAGACAATGAGAGTGAGTCTATTGGAAAGAAACCAACTCGGGCTGGTGAATGTGAGGAGAGTGACGAGGGTGCAAAGCCCAGGCTAGCCAAAGGGCGTGGAGGTGCATCCAGTTCGGGAACCACAAAATTTTCCAAACTTATGGAAGGAGTAGTGTTTGTACTGTCTGGGTTTGTTAATCCTGAGCGCAGCATTCTGCGGTCACAGGCCTTGGAAATGGGAGCAGAATATCAGCCTGACTGGAACTCAGATTGCACTCTCTTGGTTTGTGCATTTCCAAACACCCCAAAGTTTCGACAAGTTGAGGCAGATTGTGGAACTATAGTTTCAAAGGATTGGATATCAGAGTGTTACACACAGAAGAAGCTTGTTGATATTGAAAGCTACCTTATGAATGCTGGAAAACCCTGGCGTAAAAGCAGTGTTTCCCATGACAACAGCCAAGACAAAAAGGCATCCCAACCTAGAAAATCGAAGAAGCAAGATGGAGATTCACCATCAAAACCAACTGCATCATCAAATCCAAAGATTAAAGCTTCTAATTCTGTTAAGGAGTGCTTTTCTCCTTCTAAAGTGAAGAAGTGGGCAGTTGATGATTTGAATAAGACAATTTCATGGCTGGAGAGTCAAGAAGAAAAGCCAGAGCCAGATGAGATAAACCAAATAGCAGCTGAAGGGATTTTAACTTGTTTACAAGATGCAATAGATTCTCTTGAACAAAAGCAGGATGTCCGGCAAATAACTGAGCAATGGAATTTCATTCCTCATGTAGTCGAAGAGTTGGCAAAGCTCGAGGGCACGAGAAATGAGTCTGCGGCAGTATCCAAGGAAGATCTTTGCAGACAGGTAATGGAGTGTAAACGAATTTACGAGGTGGAACTTAAGAATTTAGGTGATGACCTGTCAAAGAAGAAGAAGCCAAAGACTGAAAGACAAGAGAGGGACAGTGGGAGAACTGAAGCCTTATCCAGTGGTACAGCAGGATACGACAGTGATGAAACAATTGAGATGACAGAAGAGGAAATAGACCTTGCATATAAGAATGTTGTTGCTTCTAAGATCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006284 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009987 GO:0010033 GO:0010385 GO:0010562 GO:0010604 GO:0010921 GO:0010922 GO:0019219 GO:0019220 GO:0019222 GO:0031323 GO:0031325 GO:0033554 GO:0034641 GO:0035303 GO:0035306 GO:0035510 GO:0036293 GO:0042221 GO:0042493 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045935 GO:0045937 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070482 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901968 GO:1901969 GO:1901971 GO:1901972 GO:1902544 GO:1902546

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

BRCT PTCB-BRCT

Protein Analysis

382

Amino Acids

42.32

Weight (kDa)

5.52

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80420 AT1G80420 AT1G80420 AT1G80420 AT1G80420
fragaria_vesca	FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910
malus_domestica	MD17G1197800.v1.1
prunus_persica	Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1
pyrus_communis	pycom17g20270
rosa_chinensis	RchiOBHm_Chr2g0137421
rosa_laevigata	RLG00000019657
rosa_multiflora	Rmu_sc0000765.1_g000002 Rmu_ssc0000312.1_g000013
rosa_roxburghii	Rroxscaffold_2G00107070
rosa_rugosa	Rorug02G0342300 Rorug02G0342400 Rorug02G0342400 Rorug02G0342500
rosa_samantha	Rh2AG390400 Rh2BG397800 Rh2CG377700 Rh2DG413100
rosa_wichuraiana	Rw0G004550 Rw2G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	277, 893
AclWI	GGATC	1 cut(s)	1132
AcsI	RAATTY	4 cut(s)	206, 832, 942, 964
AcuI	CTGAAG	2 cut(s)	771, 1056
AfaI	GTAC	2 cut(s)	240, 1054
AflII	CTTAAG	1 cut(s)	959
AgsI	TTSAA	5 cut(s)	78, 408, 458, 679, 794
AjnI	CCWGG	3 cut(s)	21, 158, 485
AluBI	AGCT	5 cut(s)	445, 462, 614, 749, 868
AluI	AGCT	5 cut(s)	445, 462, 614, 749, 868
Alw26I	GTCTC	2 cut(s)	9, 75
AlwI	GGATC	1 cut(s)	1132
Ama87I	CYCGRG	2 cut(s)	117, 869
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	267, 746
ApoI	RAATTY	4 cut(s)	206, 832, 942, 964
AspLEI	GCGC	1 cut(s)	267
AsuHPI	GGTGA	4 cut(s)	38, 137, 564, 983
AsuII	TTCGAA	1 cut(s)	11
AsuNHI	GCTAGC	1 cut(s)	163
AvaI	CYCGRG	2 cut(s)	117, 869
BaeGI	GKGCMC	1 cut(s)	878
BaeI	ACNNNNGTAYC	2 cut(s)	1054, 1087
BauI	CACGAG	1 cut(s)	877
BbvI	GCAGC	2 cut(s)	279, 758
BccI	CCATC	3 cut(s)	23, 557, 583
BcgI	CGANNNNNNTGC	2 cut(s)	174, 208
BciT130I	CCWGG	3 cut(s)	23, 160, 487
BciVI	GTATCC	2 cut(s)	910, 1055
BcoDI	GTCTC	2 cut(s)	9, 75
BfaI	CTAG	2 cut(s)	164, 543
BfmI	CTRYAG	1 cut(s)	399
BfrI	CTTAAG	1 cut(s)	959
BfuI	GTATCC	2 cut(s)	910, 1055
BglII	AGATCT	1 cut(s)	910
BisI	GCNGC	3 cut(s)	268, 747, 894
BlsI	GCNGC	3 cut(s)	269, 748, 895
Bme1390I	CCNGG	3 cut(s)	23, 160, 487
BmeT110I	CYCGRG	2 cut(s)	117, 869
BmiI	GGNNCC	2 cut(s)	34, 199
BmrFI	CCNGG	3 cut(s)	23, 160, 487
BmsI	GCATC	4 cut(s)	194, 542, 599, 766
BmtI	GCTAGC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	719
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	11
BsaJI	CCNNGG	5 cut(s)	22, 158, 288, 485, 903
Bse1I	ACTGG	3 cut(s)	189, 323, 1047
Bse3DI	GCAATG	1 cut(s)	833
BseBI	CCWGG	3 cut(s)	23, 160, 487
BseDI	CCNNGG	5 cut(s)	22, 158, 288, 485, 903
BseGI	GGATG	4 cut(s)	75, 185, 533, 811
BseMI	GCAATG	1 cut(s)	833
BseMII	CTCAG	3 cut(s)	252, 339, 813
BseNI	ACTGG	3 cut(s)	189, 323, 1047
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	878
BseXI	GCAGC	2 cut(s)	279, 758
BseYI	CCCAGC	1 cut(s)	44
BshFI	GGCC	1 cut(s)	287
BsiHKCI	CYCGRG	2 cut(s)	117, 869
BsiSI	CCGG	1 cut(s)	811
BslFI	GGGAC	1 cut(s)	1034
BsmAI	GTCTC	2 cut(s)	9, 75
BsmFI	GGGAC	1 cut(s)	1034
BsmI	GAATGC	2 cut(s)	270, 478
BsnI	GGCC	1 cut(s)	287
BsoBI	CYCGRG	2 cut(s)	117, 869
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	878
Bsp143I	GATC	2 cut(s)	910, 1137
BspACI	CCGC	2 cut(s)	277, 893
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	3 cut(s)	253, 338, 814
BspLI	GGNNCC	2 cut(s)	34, 199
BspOI	GCTAGC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	1132
BspT104I	TTCGAA	1 cut(s)	11
BspTI	CTTAAG	1 cut(s)	959
BsrDI	GCAATG	1 cut(s)	833
BsrI	ACTGG	3 cut(s)	189, 323, 1047
BssECI	CCNNGG	5 cut(s)	22, 158, 288, 485, 903
BssMI	GATC	2 cut(s)	910, 1137
BssSI	CACGAG	1 cut(s)	877
BssT1I	CCWWGG	2 cut(s)	288, 903
Bst2BI	CACGAG	1 cut(s)	877
Bst2UI	CCWGG	3 cut(s)	23, 160, 487
Bst4CI	ACNGT	3 cut(s)	243, 1025, 1070
Bst6I	CTCTTC	2 cut(s)	849, 1089
BstAFI	CTTAAG	1 cut(s)	959
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	4 cut(s)	261, 325, 822, 1134
BstF5I	GGATG	4 cut(s)	75, 185, 533, 811
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	913, 1140
BstMAI	GTCTC	2 cut(s)	9, 75
BstMBI	GATC	2 cut(s)	910, 1137
BstNI	CCWGG	3 cut(s)	23, 160, 487
BstSCI	CCNGG	3 cut(s)	21, 158, 485
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	878
BstV1I	GCAGC	2 cut(s)	279, 758
BstX2I	RGATCY	2 cut(s)	910, 1137
BstXI	CCANNNNNNTGG	2 cut(s)	29, 220
BstYI	RGATCY	2 cut(s)	910, 1137
BsuI	GTATCC	2 cut(s)	910, 1055
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	4 cut(s)	75, 185, 533, 811
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	4 cut(s)	505, 1030, 1054, 1075
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	239, 1053
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	4 cut(s)	66, 509, 693, 845
CviQI	GTAC	2 cut(s)	239, 1053
DdeI	CTNAG	4 cut(s)	261, 325, 822, 1134
DpnI	GATC	2 cut(s)	912, 1139
DpnII	GATC	2 cut(s)	910, 1137
Eam1104I	CTCTTC	2 cut(s)	849, 1089
EarI	CTCTTC	2 cut(s)	849, 1089
Eco130I	CCWWGG	2 cut(s)	288, 903
Eco147I	AGGCCT	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	420
Eco57I	CTGAAG	2 cut(s)	771, 1056
Eco88I	CYCGRG	2 cut(s)	117, 869
EcoRII	CCWGG	3 cut(s)	21, 158, 485
EcoRV	GATATC	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	288, 903
ErhI	CCWWGG	2 cut(s)	288, 903
FaeI	CATG	4 cut(s)	69, 512, 696, 848
FaiI	YATR	9 cut(s)	67, 221, 401, 470, 510, 694, 846, 1114, 1116
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	1 cut(s)	1034
FatI	CATG	4 cut(s)	65, 508, 692, 844
Fnu4HI	GCNGC	3 cut(s)	268, 747, 894
FokI	GGATG	4 cut(s)	82, 172, 520, 818
Fsp4HI	GCNGC	3 cut(s)	268, 747, 894
FspBI	CTAG	2 cut(s)	164, 543
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	3 cut(s)	268, 747, 894
GsaI	CCCAGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	719
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	811
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	4 cut(s)	69, 512, 696, 848
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HindIII	AAGCTT	2 cut(s)	443, 612
HinfI	GANTC	5 cut(s)	95, 569, 703, 785, 887
HpaII	CCGG	1 cut(s)	811
HphI	GGTGA	4 cut(s)	38, 137, 564, 983
Hpy166II	GTNNAC	2 cut(s)	770, 938
Hpy188I	TCNGA	2 cut(s)	328, 424
Hpy188III	TCNNGA	5 cut(s)	78, 195, 260, 707, 791
Hpy8I	GTNNAC	2 cut(s)	770, 938
HpyAV	CCTTC	5 cut(s)	68, 72, 218, 654, 746
HpyCH4III	ACNGT	3 cut(s)	243, 1025, 1070
HpyCH4V	TGCA	8 cut(s)	152, 185, 333, 350, 590, 779, 918, 1112
HpyF3I	CTNAG	4 cut(s)	261, 325, 822, 1134
Hsp92II	CATG	4 cut(s)	69, 512, 696, 848
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	910, 1137
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	2 cut(s)	279, 758
LweI	GCATC	4 cut(s)	194, 542, 599, 766
MaeI	CTAG	2 cut(s)	164, 543
MaeIII	GTNAC	3 cut(s)	140, 279, 428
MalI	GATC	2 cut(s)	912, 1139
MboI	GATC	2 cut(s)	910, 1137
MboII	GAAGA	9 cut(s)	451, 565, 667, 722, 866, 920, 1000, 1003, 1106
MfeI	CAATTG	1 cut(s)	1080
MflI	RGATCY	2 cut(s)	910, 1137
MhlI	GDGCHC	1 cut(s)	878
MluCI	AATT	7 cut(s)	206, 619, 687, 832, 942, 964, 1080
MlyI	GAGTC	3 cut(s)	104, 712, 896
MnlI	CCTC	9 cut(s)	127, 139, 173, 376, 852, 865, 943, 1011, 1090
MseI	TTAA	5 cut(s)	255, 609, 627, 761, 960
MspA1I	CMGCKG	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	959
MspI	CCGG	1 cut(s)	811
MspR9I	CCNGG	3 cut(s)	23, 160, 487
MunI	CAATTG	1 cut(s)	1080
Mva1269I	GAATGC	2 cut(s)	270, 478
MvaI	CCWGG	3 cut(s)	23, 160, 487
NdeII	GATC	2 cut(s)	910, 1137
NheI	GCTAGC	1 cut(s)	163
NlaIII	CATG	4 cut(s)	69, 512, 696, 848
NlaIV	GGNNCC	2 cut(s)	34, 199
NmuCI	GTSAC	2 cut(s)	140, 279
NspV	TTCGAA	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	869
PceI	AGGCCT	1 cut(s)	287
PctI	GAATGC	2 cut(s)	270, 478
PfeI	GAWTC	2 cut(s)	569, 785
PkrI	GCNGC	3 cut(s)	269, 748, 895
PleI	GAGTC	3 cut(s)	103, 711, 895
PpsI	GAGTC	3 cut(s)	103, 711, 895
Psp6I	CCWGG	3 cut(s)	21, 158, 485
PspFI	CCCAGC	1 cut(s)	44
PspGI	CCWGG	3 cut(s)	21, 158, 485
PspN4I	GGNNCC	2 cut(s)	34, 199
PspXI	VCTCGAGB	1 cut(s)	869
PsuI	RGATCY	2 cut(s)	910, 1137
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	2 cut(s)	240, 1054
RsaNI	GTAC	2 cut(s)	239, 1053
SaqAI	TTAA	5 cut(s)	255, 609, 627, 761, 960
SatI	GCNGC	3 cut(s)	268, 747, 894
Sau3AI	GATC	2 cut(s)	910, 1137
SchI	GAGTC	3 cut(s)	104, 712, 896
ScrFI	CCNGG	3 cut(s)	23, 160, 487
SduI	GDGCHC	1 cut(s)	878
SfaNI	GCATC	4 cut(s)	194, 542, 599, 766
SfcI	CTRYAG	1 cut(s)	399
Sfr274I	CTCGAG	1 cut(s)	869
SfuI	TTCGAA	1 cut(s)	11
SlaI	CTCGAG	1 cut(s)	869
SmlI	CTYRAG	2 cut(s)	869, 959
SmoI	CTYRAG	2 cut(s)	869, 959
Sse9I	AATT	7 cut(s)	206, 619, 687, 832, 942, 964, 1080
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	277, 893
SspMI	CTAG	2 cut(s)	164, 543
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	3 cut(s)	21, 158, 485
StyI	CCWWGG	2 cut(s)	288, 903
TaaI	ACNGT	3 cut(s)	243, 1025, 1070
TaqI	TCGA	5 cut(s)	11, 373, 551, 852, 870
TasI	AATT	7 cut(s)	206, 619, 687, 832, 942, 964, 1080
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	1 cut(s)	896
TfiI	GAWTC	2 cut(s)	569, 785
Tru1I	TTAA	5 cut(s)	255, 609, 627, 761, 960
Tru9I	TTAA	5 cut(s)	255, 609, 627, 761, 960
TscAI	CASTG	4 cut(s)	505, 1030, 1054, 1075
TseFI	GTSAC	2 cut(s)	140, 279
TseI	GCWGC	2 cut(s)	267, 746
Tsp45I	GTSAC	2 cut(s)	140, 279
TspDTI	ATGAA	5 cut(s)	54, 485, 681, 826, 1089
TspRI	CASTG	4 cut(s)	505, 1030, 1054, 1075
Vha464I	CTTAAG	1 cut(s)	959
XapI	RAATTY	4 cut(s)	206, 832, 942, 964
XhoI	CTCGAG	1 cut(s)	869
XspI	CTAG	2 cut(s)	164, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.