Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003673

Physical Location & Seq

Genomic Coordinates Forward (+)

23703642 .. 23707745

Gene Structure 4104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1197800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTCTCATTCGAAAGGGAGCCAGGGTAATGGTTCTGATAAGGCCGGGAAGCGAAGCCTTCCTTCGTGGATTAGTTCAAGAGACAATGAGAGTGAGTCTCCTGAAAAGAAATTAACTGGGGCTGCTGAAGGTGAAGAAAGCAATGAGGAAGGAAAGCCAGGGGTAGCCAGGGGACGCGGGGGTACGCCTTCTAAGGACATCAAGAAATCTTCTGCATCCAGTTCCGGAACTGCAAACTTTTCCAAACTCATGGAAGGAGTAGTGTTTGTGCTGTCTGGGTTTGTTAATCCTGAGCGCAGCAATTTGCGGTCACAGGCTTTGGAAATGGGAGCGGAATATCAGCCTGACTGGAGTTCAGATTGCACTCTCTTAGTTTGTGCATTTCCAAACACCCCAAAGTTTCGACAAGTTGAGGCAGATTGTGGAACTATAGTTTCAAAGGATTGGATATCAGAATGTTACGCCCAGAAGAAGCTTGTCGATATTGAAAGTTACCTTATGAATGCTGGAAAACCCTGGCGTAAAAGCAGTGTTTCCCATCAAAACAGCCAAGACAAAAAAGTATCCCGACCTAGTAAATCTAAGAAGCAAGATGGAGAAACACCATTGAAACCAACTGCCCCAGCAACTTCAAAGATAAAAGCTTCTAATACTGTTAAAGAGTGCTTTTCTCCTTCTAAAGTGAAGAAGTGGGCCGTTGATGATTTGAATAAGACAATATCGTGGCTGGAGAGTCAAGAAGAAAAGCCAGAGCCAGATGAGATAAAGCAAATAGCAGCTGAAGGGATTTTAACTTGTTTACAAGATGCAATAGAATTTCTTGAACAAAAACAGGATGTCCGGAAAATAACTGAGCAGTGGAATTTCATCCCTCGTGTAGTCGAAGAGTTGGCAAAGCTCGAGGGCATCGGAAATAACTCTGCGGCAGTATCCAAGGAAGATCTCTGCAAACAGGCTGTGGACTGTAAACAAATTTACGAGGCGGAACTTAATGGTTTTGGTGATGAGTCCTCAAAGAAAAAACCAAAGGTGGAAAGACAAGAGAGGGACACTGGGAAAACTGAAGGTATATGCAGTGGTGCAGCAGGATACGACAGTGATGATACAATTGAGATGACAGAGGAGGAAATAGACCATGCATATAATAATGTAGCTTCTAAGATCGCTAATGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006284 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009987 GO:0010033 GO:0010385 GO:0010562 GO:0010604 GO:0010921 GO:0010922 GO:0019219 GO:0019220 GO:0019222 GO:0031323 GO:0031325 GO:0033554 GO:0034641 GO:0035303 GO:0035306 GO:0035510 GO:0036293 GO:0042221 GO:0042493 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045935 GO:0045937 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070482 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901968 GO:1901969 GO:1901971 GO:1901972 GO:1902544 GO:1902546

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

BRCT PTCB-BRCT

Protein Analysis

393

Amino Acids

42.95

Weight (kDa)

5.43

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	80 - 154	1.4e-10	BRCA1 C Terminus (BRCT) domain
PTCB-BRCT	PF12738	88 - 136	4.8e-08	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80420 AT1G80420 AT1G80420 AT1G80420 AT1G80420
fragaria_vesca	FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910
malus_domestica	MD17G1197800.v1.1
prunus_persica	Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1
pyrus_communis	pycom17g20270
rosa_chinensis	RchiOBHm_Chr2g0137421
rosa_laevigata	RLG00000019657
rosa_multiflora	Rmu_sc0000765.1_g000002 Rmu_ssc0000312.1_g000013
rosa_roxburghii	Rroxscaffold_2G00107070
rosa_rugosa	Rorug02G0342300 Rorug02G0342400 Rorug02G0342400 Rorug02G0342500
rosa_samantha	Rh2AG390400 Rh2BG397800 Rh2CG377700 Rh2DG413100
rosa_wichuraiana	Rw0G004550 Rw2G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	332
AccII	CGCG	1 cut(s)	177
AccIII	TCCGGA	2 cut(s)	224, 840
AciI	CCGC	5 cut(s)	177, 307, 332, 923, 983
AcsI	RAATTY	3 cut(s)	815, 862, 972
AcuI	CTGAAG	3 cut(s)	147, 801, 1083
AfaI	GTAC	1 cut(s)	184
AgsI	TTSAA	7 cut(s)	78, 438, 488, 610, 633, 709, 824
AjnI	CCWGG	4 cut(s)	21, 157, 167, 515
AluBI	AGCT	5 cut(s)	475, 644, 779, 898, 1154
AluI	AGCT	5 cut(s)	475, 644, 779, 898, 1154
Alw26I	GTCTC	3 cut(s)	9, 75, 102
Ama87I	CYCGRG	1 cut(s)	899
Aor13HI	TCCGGA	2 cut(s)	224, 840
AoxI	GGCC	2 cut(s)	42, 693
ApeKI	GCWGC	4 cut(s)	122, 297, 776, 1082
ApoI	RAATTY	3 cut(s)	815, 862, 972
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	693
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	143, 1013
AsuII	TTCGAA	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	899
BaeI	ACNNNNGTAYC	2 cut(s)	1081, 1114
BauI	CACGAG	1 cut(s)	873
BbvI	GCAGC	4 cut(s)	109, 309, 788, 1094
BccI	CCATC	2 cut(s)	546, 587
BceAI	ACGGC	1 cut(s)	680
BciT130I	CCWGG	4 cut(s)	23, 159, 169, 517
BciVI	GTATCC	3 cut(s)	574, 940, 1082
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	9, 75, 102
BfaI	CTAG	1 cut(s)	573
BfmI	CTRYAG	1 cut(s)	429
BfuI	GTATCC	3 cut(s)	574, 940, 1082
BglII	AGATCT	1 cut(s)	940
BisI	GCNGC	5 cut(s)	123, 298, 777, 924, 1083
BlsI	GCNGC	5 cut(s)	124, 299, 778, 925, 1084
Bme1390I	CCNGG	5 cut(s)	23, 46, 159, 169, 517
BmeT110I	CYCGRG	1 cut(s)	899
BmgT120I	GGNCC	1 cut(s)	693
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	5 cut(s)	23, 46, 159, 169, 517
BmrI	ACTGGG	2 cut(s)	126, 1062
BmsI	GCATC	3 cut(s)	224, 796, 915
BmuI	ACTGGG	2 cut(s)	126, 1062
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpmI	CTGGAG	2 cut(s)	370, 749
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	46
BsaJI	CCNNGG	5 cut(s)	22, 158, 168, 515, 933
BsaWI	WCCGGW	2 cut(s)	224, 840
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	4 cut(s)	121, 219, 353, 1057
Bse3DI	GCAATG	1 cut(s)	148
BseAI	TCCGGA	2 cut(s)	224, 840
BseBI	CCWGG	4 cut(s)	23, 159, 169, 517
BseDI	CCNNGG	5 cut(s)	22, 158, 168, 515, 933
BseGI	GGATG	3 cut(s)	215, 841, 867
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	282, 843
BseNI	ACTGG	4 cut(s)	121, 219, 353, 1057
BseRI	GAGGAG	1 cut(s)	1136
BseXI	GCAGC	4 cut(s)	109, 309, 788, 1094
BseYI	CCCAGC	1 cut(s)	622
BsgI	GTGCAG	1 cut(s)	1101
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	44, 695
BsiHKCI	CYCGRG	1 cut(s)	899
BsiSI	CCGG	3 cut(s)	45, 225, 841
BslFI	GGGAC	2 cut(s)	186, 1061
BsmAI	GTCTC	3 cut(s)	9, 75, 102
BsmFI	GGGAC	2 cut(s)	186, 1061
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	44, 695
BsoBI	CYCGRG	1 cut(s)	899
Bsp119I	TTCGAA	1 cut(s)	11
Bsp13I	TCCGGA	2 cut(s)	224, 840
Bsp143I	GATC	2 cut(s)	940, 1161
BspACI	CCGC	5 cut(s)	177, 307, 332, 923, 983
BspANI	GGCC	2 cut(s)	44, 695
BspCNI	CTCAG	2 cut(s)	283, 844
BspEI	TCCGGA	2 cut(s)	224, 840
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	20
BspT104I	TTCGAA	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	4 cut(s)	121, 219, 353, 1057
BssECI	CCNNGG	5 cut(s)	22, 158, 168, 515, 933
BssMI	GATC	2 cut(s)	940, 1161
BssSI	CACGAG	1 cut(s)	873
BssT1I	CCWWGG	1 cut(s)	933
Bst2BI	CACGAG	1 cut(s)	873
Bst2UI	CCWGG	4 cut(s)	23, 159, 169, 517
Bst4CI	ACNGT	3 cut(s)	655, 965, 1097
Bst6I	CTCTTC	1 cut(s)	879
BstBI	TTCGAA	1 cut(s)	11
BstDEI	CTNAG	6 cut(s)	192, 291, 370, 582, 852, 1158
BstF5I	GGATG	3 cut(s)	215, 841, 867
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	2 cut(s)	943, 1164
BstMAI	GTCTC	3 cut(s)	9, 75, 102
BstMBI	GATC	2 cut(s)	940, 1161
BstNI	CCWGG	4 cut(s)	23, 159, 169, 517
BstSCI	CCNGG	5 cut(s)	21, 44, 157, 167, 515
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	4 cut(s)	109, 309, 788, 1094
BstX2I	RGATCY	1 cut(s)	940
BstXI	CCANNNNNNTGG	2 cut(s)	29, 250
BstYI	RGATCY	1 cut(s)	940
BsuI	GTATCC	3 cut(s)	574, 940, 1082
BsuRI	GGCC	2 cut(s)	44, 695
BtsCI	GGATG	3 cut(s)	215, 841, 867
BtsI	GCAGTG	3 cut(s)	535, 863, 1081
BtsIMutI	CAGTG	5 cut(s)	535, 863, 1050, 1081, 1102
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	693
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	2 cut(s)	250, 1136
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	6 cut(s)	192, 291, 370, 582, 852, 1158
DpnI	GATC	2 cut(s)	942, 1163
DpnII	GATC	2 cut(s)	940, 1161
Eam1104I	CTCTTC	1 cut(s)	879
EarI	CTCTTC	1 cut(s)	879
EciI	GGCGGA	1 cut(s)	998
Eco130I	CCWWGG	1 cut(s)	933
Eco32I	GATATC	1 cut(s)	450
Eco57I	CTGAAG	3 cut(s)	147, 801, 1083
Eco88I	CYCGRG	1 cut(s)	899
EcoRII	CCWGG	4 cut(s)	21, 157, 167, 515
EcoRV	GATATC	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	933
EcoT22I	ATGCAT	1 cut(s)	1141
ErhI	CCWWGG	1 cut(s)	933
FaeI	CATG	2 cut(s)	253, 1139
FaiI	YATR	8 cut(s)	251, 431, 500, 1070, 1072, 1137, 1141, 1143
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FaqI	GGGAC	2 cut(s)	186, 1061
FatI	CATG	2 cut(s)	249, 1135
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	5 cut(s)	123, 298, 777, 924, 1083
FokI	GGATG	3 cut(s)	202, 848, 854
Fsp4HI	GCNGC	5 cut(s)	123, 298, 777, 924, 1083
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	5 cut(s)	123, 298, 777, 924, 1083
GsaI	CCCAGC	1 cut(s)	626
GsuI	CTGGAG	2 cut(s)	370, 749
HaeIII	GGCC	2 cut(s)	44, 695
HapII	CCGG	3 cut(s)	45, 225, 841
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	253, 1139
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HindIII	AAGCTT	2 cut(s)	473, 642
HinfI	GANTC	3 cut(s)	95, 733, 1007
HpaII	CCGG	3 cut(s)	45, 225, 841
HphI	GGTGA	2 cut(s)	143, 1013
Hpy166II	GTNNAC	3 cut(s)	800, 961, 968
Hpy188I	TCNGA	4 cut(s)	37, 358, 454, 911
Hpy188III	TCNNGA	9 cut(s)	78, 101, 202, 225, 290, 567, 737, 821, 841
Hpy8I	GTNNAC	3 cut(s)	800, 961, 968
HpyAV	CCTTC	9 cut(s)	68, 72, 122, 143, 198, 248, 684, 776, 1058
HpyCH4III	ACNGT	3 cut(s)	655, 965, 1097
HpyCH4V	TGCA	9 cut(s)	215, 233, 363, 380, 809, 948, 1074, 1082, 1139
HpyF3I	CTNAG	6 cut(s)	192, 291, 370, 582, 852, 1158
Hsp92II	CATG	2 cut(s)	253, 1139
HspAI	GCGC	1 cut(s)	295
Kpn2I	TCCGGA	2 cut(s)	224, 840
Kzo9I	GATC	2 cut(s)	940, 1161
LmnI	GCTCC	2 cut(s)	18, 329
Lsp1109I	GCAGC	4 cut(s)	109, 309, 788, 1094
LweI	GCATC	3 cut(s)	224, 796, 915
MaeI	CTAG	1 cut(s)	573
MaeIII	GTNAC	3 cut(s)	309, 458, 491
MalI	GATC	2 cut(s)	942, 1163
MbiI	CCGCTC	1 cut(s)	332
MboI	GATC	2 cut(s)	940, 1161
MboII	GAAGA	7 cut(s)	146, 201, 481, 697, 752, 896, 950
MfeI	CAATTG	1 cut(s)	1107
MflI	RGATCY	1 cut(s)	940
MluCI	AATT	6 cut(s)	110, 301, 815, 862, 972, 1107
MlyI	GAGTC	3 cut(s)	104, 742, 1016
MnlI	CCTC	9 cut(s)	139, 406, 882, 895, 973, 1021, 1038, 1114, 1117
Mph1103I	ATGCAT	1 cut(s)	1141
MroI	TCCGGA	2 cut(s)	224, 840
MseI	TTAA	6 cut(s)	113, 285, 657, 791, 990, 1177
MspA1I	CMGCKG	1 cut(s)	779
MspI	CCGG	3 cut(s)	45, 225, 841
MspR9I	CCNGG	5 cut(s)	23, 46, 159, 169, 517
MunI	CAATTG	1 cut(s)	1107
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	4 cut(s)	23, 159, 169, 517
MvnI	CGCG	1 cut(s)	177
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	2 cut(s)	940, 1161
NlaIII	CATG	2 cut(s)	253, 1139
NlaIV	GGNNCC	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	309
NsiI	ATGCAT	1 cut(s)	1141
NspV	TTCGAA	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	899
PctI	GAATGC	1 cut(s)	508
PkrI	GCNGC	5 cut(s)	124, 299, 778, 925, 1084
PleI	GAGTC	3 cut(s)	103, 741, 1015
PpsI	GAGTC	3 cut(s)	103, 741, 1015
Psp6I	CCWGG	4 cut(s)	21, 157, 167, 515
PspFI	CCCAGC	1 cut(s)	622
PspGI	CCWGG	4 cut(s)	21, 157, 167, 515
PspN4I	GGNNCC	1 cut(s)	20
PspPI	GGNCC	1 cut(s)	693
PspXI	VCTCGAGB	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	940
PvuII	CAGCTG	1 cut(s)	779
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	6 cut(s)	113, 285, 657, 791, 990, 1177
SatI	GCNGC	5 cut(s)	123, 298, 777, 924, 1083
Sau3AI	GATC	2 cut(s)	940, 1161
Sau96I	GGNCC	1 cut(s)	693
SchI	GAGTC	3 cut(s)	104, 742, 1016
ScrFI	CCNGG	5 cut(s)	23, 46, 159, 169, 517
SfaNI	GCATC	3 cut(s)	224, 796, 915
SfcI	CTRYAG	1 cut(s)	429
Sfr274I	CTCGAG	1 cut(s)	899
SfuI	TTCGAA	1 cut(s)	11
SlaI	CTCGAG	1 cut(s)	899
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
Sse9I	AATT	6 cut(s)	110, 301, 815, 862, 972, 1107
SsiI	CCGC	5 cut(s)	177, 307, 332, 923, 983
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	5 cut(s)	21, 44, 157, 167, 515
StyI	CCWWGG	1 cut(s)	933
TaaI	ACNGT	3 cut(s)	655, 965, 1097
TaqI	TCGA	5 cut(s)	11, 403, 480, 882, 900
TasI	AATT	6 cut(s)	110, 301, 815, 862, 972, 1107
TauI	GCSGC	1 cut(s)	926
Tru1I	TTAA	6 cut(s)	113, 285, 657, 791, 990, 1177
Tru9I	TTAA	6 cut(s)	113, 285, 657, 791, 990, 1177
TscAI	CASTG	5 cut(s)	535, 863, 1057, 1081, 1102
TseFI	GTSAC	1 cut(s)	309
TseI	GCWGC	4 cut(s)	122, 297, 776, 1082
Tsp45I	GTSAC	1 cut(s)	309
TspDTI	ATGAA	2 cut(s)	515, 856
TspRI	CASTG	5 cut(s)	535, 863, 1057, 1081, 1102
XapI	RAATTY	3 cut(s)	815, 862, 972
XhoI	CTCGAG	1 cut(s)	899
XspI	CTAG	1 cut(s)	573
Zsp2I	ATGCAT	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.