Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003673

Physical Location & Seq

Genomic Coordinates Reverse (-)

60067347 .. 60071830

Gene Structure 4484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG413100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCTCATTCCAAGAATGGCGCTATTAAGCCCGGCAACCGAAACCTTCCTTCGTGGATGAGTTCAAGAGACAATGAGAGTGAGTCTCCTGAAAAGAAACCAAATGGGGATGGGGCTGGTGAAGGTGAGGAAAGGAAGCCCACGCAAGGGAGAGGGCGCGGAAGCAGCAAGAATTCTGGTGCATCCAGCTCGGGAACAACAAATGTGTCCAAACTTCTGGAAGGGGTTGTGTTTGTACTATCTGGTTTTGTTAATCCTGAGCGCAGCATTTTACGGTCACAGGCATTGGAAATGGGAGCAGAATATCAGCCTGATTGGAGTTCAGATTGCACTCTCTTGGTTTGTGCGTTTTCAAATACCCCCAAGTTTCGTCAAGTTGAGGCAGATTGTGGAACTATTGTTTCAAAGGAATGGATATCAGAGTGTTACACGCAGAAGAAGCTTGTTGATATAGAAAGTTACCTTATGCATGCTGGGAAACCCTGGCGTAAAAGCAGTGTTTCCCAGGACAACAGGCAAGACCAGAGATTATCCCGGCCTAGTAGATCTAAAAAGCAGGATGGAGATTCTCCTTCAAAACCAACTGCCTCTGCAACTTTAAAGCGTGTCAAAGCTGCTGACTCTGTTAGAGAGTGCTTTTCTCCATCTGAAGTGAAGAAGTGGGCAGTCGATGATTTGAAGAAGACGATATCATGGCTGGAGAGTCAAGAAGAAAAGGTTATTGGTATTCTGCTTTTTATCTGTGTTTCGCATGCCCTGATGTATAGTTTTGTTTGGCCAAAAGTGAGCCTGCTGGAGTTCAAAACTTTCTTTTTTAGCAGCTGGAGTTTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006284 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009987 GO:0010033 GO:0010385 GO:0010562 GO:0010604 GO:0010921 GO:0010922 GO:0019219 GO:0019220 GO:0019222 GO:0031323 GO:0031325 GO:0033554 GO:0034641 GO:0035303 GO:0035306 GO:0035510 GO:0036293 GO:0042221 GO:0042493 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045935 GO:0045937 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070482 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901968 GO:1901969 GO:1901971 GO:1901972 GO:1902544 GO:1902546

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

BRCT PTCB-BRCT

Protein Analysis

278

Amino Acids

30.95

Weight (kDa)

8.99

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	69 - 143	1e-10	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	71 - 154	3.2e-06	BRCT domain
PTCB-BRCT	PF12738	77 - 125	1.7e-07	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80420 AT1G80420 AT1G80420 AT1G80420 AT1G80420
fragaria_vesca	FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910
malus_domestica	MD17G1197800.v1.1
prunus_persica	Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1
pyrus_communis	pycom17g20270
rosa_chinensis	RchiOBHm_Chr2g0137421
rosa_laevigata	RLG00000019657
rosa_multiflora	Rmu_sc0000765.1_g000002 Rmu_ssc0000312.1_g000013
rosa_roxburghii	Rroxscaffold_2G00107070
rosa_rugosa	Rorug02G0342300 Rorug02G0342400 Rorug02G0342400 Rorug02G0342500
rosa_samantha	Rh2AG390400 Rh2BG397800 Rh2CG377700 Rh2DG413100
rosa_wichuraiana	Rw0G004550 Rw2G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	159
AciI	CCGC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	776
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	669
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	146, 147
AgsI	TTSAA	6 cut(s)	66, 354, 405, 576, 679, 802
AjnI	CCWGG	2 cut(s)	482, 504
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
AluBI	AGCT	4 cut(s)	189, 442, 614, 822
AluI	AGCT	4 cut(s)	189, 442, 614, 822
Alw26I	GTCTC	3 cut(s)	9, 63, 90
Ama87I	CYCGRG	1 cut(s)	190
AoxI	GGCC	2 cut(s)	536, 776
ApeKI	GCWGC	4 cut(s)	165, 264, 614, 819
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	3 cut(s)	23, 159, 264
AsuC2I	CCSGG	2 cut(s)	33, 535
AsuHPI	GGTGA	2 cut(s)	131, 137
AvaI	CYCGRG	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	778
BbsI	GAAGAC	1 cut(s)	689
BbvI	GCAGC	4 cut(s)	177, 276, 601, 831
BccI	CCATC	3 cut(s)	104, 554, 652
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BciT130I	CCWGG	2 cut(s)	484, 506
BcnI	CCSGG	2 cut(s)	33, 535
BcoDI	GTCTC	3 cut(s)	9, 63, 90
BfaI	CTAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	24
BglII	AGATCT	1 cut(s)	545
BisI	GCNGC	4 cut(s)	166, 265, 615, 820
BlsI	GCNGC	4 cut(s)	167, 266, 616, 821
Bme1390I	CCNGG	4 cut(s)	33, 484, 506, 535
BmeT110I	CYCGRG	1 cut(s)	190
BmrFI	CCNGG	4 cut(s)	33, 484, 506, 535
BmsI	GCATC	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	689
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BpmI	CTGGAG	2 cut(s)	719, 815
Bpu10I	CCTNAGC	1 cut(s)	258
BpuMI	CCSGG	2 cut(s)	33, 535
BsaJI	CCNNGG	2 cut(s)	482, 504
BsaXI	ACNNNNNCTCC	1 cut(s)	817
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 147
BseBI	CCWGG	2 cut(s)	484, 506
BseDI	CCNNGG	2 cut(s)	482, 504
BseGI	GGATG	4 cut(s)	63, 115, 182, 565
BseLI	CCNNNNNNNGG	2 cut(s)	146, 147
BseMII	CTCAG	1 cut(s)	249
BseXI	GCAGC	4 cut(s)	177, 276, 601, 831
BseYI	CCCAGC	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	538, 778
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	33, 535
BslI	CCNNNNNNNGG	2 cut(s)	146, 147
BsmAI	GTCTC	3 cut(s)	9, 63, 90
BsnI	GGCC	2 cut(s)	538, 778
BsoBI	CYCGRG	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	545
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	2 cut(s)	538, 778
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	482, 504
BssMI	GATC	1 cut(s)	545
Bst2UI	CCWGG	2 cut(s)	484, 506
Bst4CI	ACNGT	1 cut(s)	276
BstC8I	GCNNGC	3 cut(s)	471, 753, 791
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	4 cut(s)	63, 115, 182, 565
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	3 cut(s)	23, 159, 264
BstKTI	GATC	1 cut(s)	548
BstMAI	GTCTC	3 cut(s)	9, 63, 90
BstMBI	GATC	1 cut(s)	545
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 439
BstNI	CCWGG	2 cut(s)	484, 506
BstNSI	RCATGY	2 cut(s)	473, 755
BstSCI	CCNGG	4 cut(s)	31, 482, 504, 533
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	177, 276, 601, 831
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	545
BsuRI	GGCC	2 cut(s)	538, 778
BtsCI	GGATG	4 cut(s)	63, 115, 182, 565
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	502
Cac8I	GCNNGC	3 cut(s)	471, 753, 791
CfoI	GCGC	3 cut(s)	23, 159, 264
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	3 cut(s)	470, 693, 752
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	547
DpnII	GATC	1 cut(s)	545
DraI	TTTAAA	1 cut(s)	600
EaeI	YGGCCR	1 cut(s)	776
Eco32I	GATATC	2 cut(s)	417, 690
Eco57I	CTGAAG	1 cut(s)	669
Eco88I	CYCGRG	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	482, 504
EcoRV	GATATC	2 cut(s)	417, 690
EcoT22I	ATGCAT	1 cut(s)	471
FaeI	CATG	3 cut(s)	473, 696, 755
FaiI	YATR	6 cut(s)	452, 467, 471, 694, 753, 765
FatI	CATG	3 cut(s)	469, 692, 751
Fnu4HI	GCNGC	4 cut(s)	166, 265, 615, 820
FokI	GGATG	4 cut(s)	70, 122, 169, 572
Fsp4HI	GCNGC	4 cut(s)	166, 265, 615, 820
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	3 cut(s)	22, 158, 263
GluI	GCNGC	4 cut(s)	166, 265, 615, 820
GsaI	CCCAGC	1 cut(s)	477
GsuI	CTGGAG	2 cut(s)	719, 815
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	538, 778
HapII	CCGG	2 cut(s)	33, 535
HhaI	GCGC	3 cut(s)	23, 159, 264
Hin1II	CATG	3 cut(s)	473, 696, 755
Hin6I	GCGC	3 cut(s)	21, 157, 262
HinP1I	GCGC	3 cut(s)	21, 157, 262
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	4 cut(s)	83, 566, 620, 703
HpaII	CCGG	2 cut(s)	33, 535
HphI	GGTGA	2 cut(s)	131, 137
Hpy188I	TCNGA	3 cut(s)	325, 421, 649
Hpy188III	TCNNGA	6 cut(s)	66, 89, 192, 218, 257, 707
HpyAV	CCTTC	5 cut(s)	56, 60, 116, 215, 582
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4V	TGCA	4 cut(s)	182, 330, 469, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 439
HpyF3I	CTNAG	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	473, 696, 755
HspAI	GCGC	3 cut(s)	21, 157, 262
Kzo9I	GATC	1 cut(s)	545
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	4 cut(s)	177, 276, 601, 831
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	3 cut(s)	276, 425, 458
MalI	GATC	1 cut(s)	547
MboI	GATC	1 cut(s)	545
MboII	GAAGA	5 cut(s)	448, 667, 691, 694, 722
MflI	RGATCY	1 cut(s)	545
MlsI	TGGCCA	1 cut(s)	778
MluCI	AATT	1 cut(s)	172
MluNI	TGGCCA	1 cut(s)	778
MlyI	GAGTC	3 cut(s)	92, 614, 712
MnlI	CCTC	4 cut(s)	121, 146, 373, 598
Mox20I	TGGCCA	1 cut(s)	778
Mph1103I	ATGCAT	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	778
MseI	TTAA	4 cut(s)	27, 252, 599, 835
Msp20I	TGGCCA	1 cut(s)	778
MspA1I	CMGCKG	1 cut(s)	822
MspI	CCGG	2 cut(s)	33, 535
MspR9I	CCNGG	4 cut(s)	33, 484, 506, 535
MvaI	CCWGG	2 cut(s)	484, 506
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	165, 439
NciI	CCSGG	2 cut(s)	33, 535
NdeII	GATC	1 cut(s)	545
NlaIII	CATG	3 cut(s)	473, 696, 755
NmuCI	GTSAC	1 cut(s)	276
NsiI	ATGCAT	1 cut(s)	471
NspI	RCATGY	2 cut(s)	473, 755
PaeI	GCATGC	2 cut(s)	473, 755
PfeI	GAWTC	1 cut(s)	566
PkrI	GCNGC	4 cut(s)	167, 266, 616, 821
PleI	GAGTC	3 cut(s)	91, 614, 711
PpsI	GAGTC	3 cut(s)	91, 614, 711
Psp6I	CCWGG	2 cut(s)	482, 504
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	2 cut(s)	482, 504
PsuI	RGATCY	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	822
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	4 cut(s)	27, 252, 599, 835
SatI	GCNGC	4 cut(s)	166, 265, 615, 820
Sau3AI	GATC	1 cut(s)	545
SchI	GAGTC	3 cut(s)	92, 614, 712
ScrFI	CCNGG	4 cut(s)	33, 484, 506, 535
SetI	ASST	8 cut(s)	48, 127, 191, 444, 465, 616, 720, 824
SfaNI	GCATC	1 cut(s)	191
SphI	GCATGC	2 cut(s)	473, 755
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	4 cut(s)	31, 482, 504, 533
TaaI	ACNGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	669
TasI	AATT	1 cut(s)	172
TatI	WGTACW	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	4 cut(s)	27, 252, 599, 835
Tru9I	TTAA	4 cut(s)	27, 252, 599, 835
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	276
TseI	GCWGC	4 cut(s)	165, 264, 614, 819
Tsp45I	GTSAC	1 cut(s)	276
TspRI	CASTG	1 cut(s)	502
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	2 cut(s)	473, 755
XspI	CTAG	1 cut(s)	540
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.