Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003673

Physical Location & Seq

Genomic Coordinates Reverse (-)

51558755 .. 51563029

Gene Structure 4275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG377700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCTCATTCCAAGAATGGCAACCGAAACCTTCCTTCGTGGATGAGTTCAAGAGACAATGAGAGTGAGTCTCCTGAAAAGAAACCAAATGGGGATGGGGCTGGTGAAGGTGAGGAAAGGAAGCCCACGCAAGGGAGAGCGCGCGGAAGCAGCAAGAATTCTGGTGCATCCAGCTCGGGAACAACAAATGTGTCCAAACTTCTGGAAGGGGTTGTGTTTGTACTATCTGGTTTTGTTAATCCTGAGCGCAGCATCTTACGGTCACAGGCATTGGAAATGGGAGCAGAATATCAGCCTGATTGGAGTTCAGATTGCACTCTCTTGGTTTGTGCGTTTTCAAATACCCCCAAGTTTCGTCAAGTTGAGGCAGATTGTGGAACTATTGTTTCAAAGGAATGGATATCAGAGTGTTACACACAGAAGAAGCTTGTTGATATAGAAAGTTACCTTATGCATGCTGGGAAACCCTGGCGTAAAAGCAGTGTTTCCCAGGACAACAGGCAAGACCAGAGATTATCCCGGCCTAGTAGATCTAAAAAGCAGGATGGAGATTCTCCTTCAAAACCAACTGCCTCTGCAACTTTAAAGCGTGTCAAAGCTACTGACTCTATTAGAGAGTGCTTTTCTCCATCTGAAGTGAAGAAGTGGGCAGTCGATGATTTGAAGAAGACGATATCATGGCTGGAGAGTCAAGAAGAAAAGGTTATTGGTATTCTGCTTTTTATCTGTGTTTCGCATGCCCTGATGGATAGTTTTGTTTGGCCAAAAGTGAGCCTGCTGGAGTTCAAAACTTTCTTTTTTAGCAGCTGGAGTTTTGTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006284 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009987 GO:0010033 GO:0010385 GO:0010562 GO:0010604 GO:0010921 GO:0010922 GO:0019219 GO:0019220 GO:0019222 GO:0031323 GO:0031325 GO:0033554 GO:0034641 GO:0035303 GO:0035306 GO:0035510 GO:0036293 GO:0042221 GO:0042493 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045935 GO:0045937 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070482 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901968 GO:1901969 GO:1901971 GO:1901972 GO:1902544 GO:1902546

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

BRCT PTCB-BRCT

Protein Analysis

274

Amino Acids

30.62

Weight (kDa)

8.94

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	64 - 138	1e-10	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	66 - 149	3.1e-06	BRCT domain
PTCB-BRCT	PF12738	72 - 120	1.6e-07	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80420 AT1G80420 AT1G80420 AT1G80420 AT1G80420
fragaria_vesca	FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910
malus_domestica	MD17G1197800.v1.1
prunus_persica	Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1
pyrus_communis	pycom17g20270
rosa_chinensis	RchiOBHm_Chr2g0137421
rosa_laevigata	RLG00000019657
rosa_multiflora	Rmu_sc0000765.1_g000002 Rmu_ssc0000312.1_g000013
rosa_roxburghii	Rroxscaffold_2G00107070
rosa_rugosa	Rorug02G0342300 Rorug02G0342400 Rorug02G0342400 Rorug02G0342500
rosa_samantha	Rh2AG390400 Rh2BG397800 Rh2CG377700 Rh2DG413100
rosa_wichuraiana	Rw0G004550 Rw2G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	142, 144
AciI	CCGC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	761
AcsI	RAATTY	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	131, 132
AgsI	TTSAA	6 cut(s)	51, 339, 390, 561, 664, 787
AjnI	CCWGG	2 cut(s)	467, 489
AjuI	GAANNNNNNNTTGG	2 cut(s)	690, 722
AluBI	AGCT	4 cut(s)	174, 427, 599, 807
AluI	AGCT	4 cut(s)	174, 427, 599, 807
Alw26I	GTCTC	3 cut(s)	9, 48, 75
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	521, 761
ApeKI	GCWGC	3 cut(s)	150, 249, 804
ApoI	RAATTY	1 cut(s)	157
AspLEI	GCGC	3 cut(s)	142, 144, 249
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	2 cut(s)	116, 122
AvaI	CYCGRG	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	763
BbsI	GAAGAC	1 cut(s)	674
BbvI	GCAGC	3 cut(s)	162, 261, 816
BccI	CCATC	4 cut(s)	89, 539, 637, 739
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BciT130I	CCWGG	2 cut(s)	469, 491
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	3 cut(s)	9, 48, 75
BfaI	CTAG	1 cut(s)	525
BglII	AGATCT	1 cut(s)	530
BisI	GCNGC	3 cut(s)	151, 250, 805
BlsI	GCNGC	3 cut(s)	152, 251, 806
Bme1390I	CCNGG	3 cut(s)	469, 491, 520
BmeT110I	CYCGRG	1 cut(s)	175
BmrFI	CCNGG	3 cut(s)	469, 491, 520
BmsI	GCATC	2 cut(s)	176, 261
BpiI	GAAGAC	1 cut(s)	674
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
BpmI	CTGGAG	2 cut(s)	704, 800
Bpu10I	CCTNAGC	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	467, 489
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 132
BseBI	CCWGG	2 cut(s)	469, 491
BseDI	CCNNGG	2 cut(s)	467, 489
BseGI	GGATG	4 cut(s)	48, 100, 167, 550
BseLI	CCNNNNNNNGG	2 cut(s)	131, 132
BseMII	CTCAG	1 cut(s)	234
BsePI	GCGCGC	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	162, 261, 816
BseYI	CCCAGC	1 cut(s)	458
Bsh1236I	CGCG	2 cut(s)	142, 144
BshFI	GGCC	2 cut(s)	523, 763
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	520
BslI	CCNNNNNNNGG	2 cut(s)	131, 132
BsmAI	GTCTC	3 cut(s)	9, 48, 75
BsnI	GGCC	2 cut(s)	523, 763
BsoBI	CYCGRG	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	530
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	2 cut(s)	523, 763
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	2 cut(s)	142, 144
BssECI	CCNNGG	2 cut(s)	467, 489
BssHII	GCGCGC	1 cut(s)	140
BssMI	GATC	1 cut(s)	530
Bst2UI	CCWGG	2 cut(s)	469, 491
Bst4CI	ACNGT	1 cut(s)	261
BstC8I	GCNNGC	4 cut(s)	142, 456, 738, 776
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	4 cut(s)	48, 100, 167, 550
BstFNI	CGCG	2 cut(s)	142, 144
BstHHI	GCGC	3 cut(s)	142, 144, 249
BstKTI	GATC	1 cut(s)	533
BstMAI	GTCTC	3 cut(s)	9, 48, 75
BstMBI	GATC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNI	CCWGG	2 cut(s)	469, 491
BstNSI	RCATGY	2 cut(s)	458, 740
BstSCI	CCNGG	3 cut(s)	467, 489, 518
BstUI	CGCG	2 cut(s)	142, 144
BstV1I	GCAGC	3 cut(s)	162, 261, 816
BstV2I	GAAGAC	1 cut(s)	674
BstX2I	RGATCY	1 cut(s)	530
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	523, 763
BtsCI	GGATG	4 cut(s)	48, 100, 167, 550
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	1 cut(s)	487
Cac8I	GCNNGC	4 cut(s)	142, 456, 738, 776
CfoI	GCGC	3 cut(s)	142, 144, 249
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	3 cut(s)	455, 678, 737
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	532
DpnII	GATC	1 cut(s)	530
DraI	TTTAAA	1 cut(s)	585
EaeI	YGGCCR	1 cut(s)	761
Eco32I	GATATC	2 cut(s)	402, 675
Eco57I	CTGAAG	1 cut(s)	654
Eco88I	CYCGRG	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	467, 489
EcoRV	GATATC	2 cut(s)	402, 675
EcoT22I	ATGCAT	1 cut(s)	456
FaeI	CATG	3 cut(s)	458, 681, 740
FaiI	YATR	5 cut(s)	437, 452, 456, 679, 738
FatI	CATG	3 cut(s)	454, 677, 736
Fnu4HI	GCNGC	3 cut(s)	151, 250, 805
FokI	GGATG	4 cut(s)	55, 107, 154, 557
Fsp4HI	GCNGC	3 cut(s)	151, 250, 805
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	3 cut(s)	141, 143, 248
GluI	GCNGC	3 cut(s)	151, 250, 805
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	2 cut(s)	704, 800
HaeIII	GGCC	2 cut(s)	523, 763
HapII	CCGG	1 cut(s)	520
HhaI	GCGC	3 cut(s)	142, 144, 249
Hin1II	CATG	3 cut(s)	458, 681, 740
Hin6I	GCGC	3 cut(s)	140, 142, 247
HinP1I	GCGC	3 cut(s)	140, 142, 247
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	4 cut(s)	68, 551, 605, 688
HpaII	CCGG	1 cut(s)	520
HphI	GGTGA	2 cut(s)	116, 122
Hpy188I	TCNGA	3 cut(s)	310, 406, 634
Hpy188III	TCNNGA	6 cut(s)	51, 74, 177, 203, 242, 692
HpyAV	CCTTC	5 cut(s)	41, 45, 101, 200, 567
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	167, 315, 454, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	458, 681, 740
HspAI	GCGC	3 cut(s)	140, 142, 247
Kzo9I	GATC	1 cut(s)	530
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	3 cut(s)	162, 261, 816
LweI	GCATC	2 cut(s)	176, 261
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	3 cut(s)	261, 410, 443
MalI	GATC	1 cut(s)	532
MboI	GATC	1 cut(s)	530
MboII	GAAGA	5 cut(s)	433, 652, 676, 679, 707
MflI	RGATCY	1 cut(s)	530
MlsI	TGGCCA	1 cut(s)	763
MluCI	AATT	1 cut(s)	157
MluNI	TGGCCA	1 cut(s)	763
MlyI	GAGTC	3 cut(s)	77, 599, 697
MnlI	CCTC	3 cut(s)	106, 358, 583
Mox20I	TGGCCA	1 cut(s)	763
Mph1103I	ATGCAT	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	763
MseI	TTAA	3 cut(s)	237, 584, 819
Msp20I	TGGCCA	1 cut(s)	763
MspA1I	CMGCKG	1 cut(s)	807
MspI	CCGG	1 cut(s)	520
MspR9I	CCNGG	3 cut(s)	469, 491, 520
MvaI	CCWGG	2 cut(s)	469, 491
MvnI	CGCG	2 cut(s)	142, 144
MwoI	GCNNNNNNNGC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	520
NdeII	GATC	1 cut(s)	530
NlaIII	CATG	3 cut(s)	458, 681, 740
NmuCI	GTSAC	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	2 cut(s)	458, 740
PaeI	GCATGC	2 cut(s)	458, 740
PauI	GCGCGC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	3 cut(s)	152, 251, 806
PleI	GAGTC	3 cut(s)	76, 599, 696
PpsI	GAGTC	3 cut(s)	76, 599, 696
Psp6I	CCWGG	2 cut(s)	467, 489
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	2 cut(s)	467, 489
PsuI	RGATCY	1 cut(s)	530
PteI	GCGCGC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	807
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	237, 584, 819
SatI	GCNGC	3 cut(s)	151, 250, 805
Sau3AI	GATC	1 cut(s)	530
SchI	GAGTC	3 cut(s)	77, 599, 697
ScrFI	CCNGG	3 cut(s)	469, 491, 520
SetI	ASST	8 cut(s)	33, 112, 176, 429, 450, 601, 705, 809
SfaNI	GCATC	2 cut(s)	176, 261
SphI	GCATGC	2 cut(s)	458, 740
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	3 cut(s)	467, 489, 518
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	654
TasI	AATT	1 cut(s)	157
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	3 cut(s)	237, 584, 819
Tru9I	TTAA	3 cut(s)	237, 584, 819
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	3 cut(s)	150, 249, 804
Tsp45I	GTSAC	1 cut(s)	261
TspRI	CASTG	1 cut(s)	487
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	2 cut(s)	458, 740
XspI	CTAG	1 cut(s)	525
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.