AT2G01060
MYB Family

MYB-CC type transfactor, LHEQLE motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004369
Physical Location & Seq
Reverse (-)
73208 .. 75509
2302 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01060.2

Sequence Viewer

Length: 861 bp
ATGGAAGCAGACAACGGAGGCCCCAATTCTAGTCATGCATCCAAACAACGTCTGCGTTGGACGCATGAGCTACATGAACGCTTCGTTGATGCCGTTGCTCAACTTGGTGGCCCTGATAGAGCTACACCCAAAGGCGTTCTTAGAGTGATGGGTGTACAAGGCTTAACTATATATCATGTCAAGAGTCACTTACAGAAATATCGACTTGCAAAGTATCTTCCAGATTCGTCTTCTGAAGGGAAAAAAACTGATAAGAAAGAATCTGGAGATATGCTCTCTGGGTTGGACGGCTCGTCGGGAATGCAGATAACTGAAGCCCTCAAGTTGCAGATGGAAGTTCAGAAACGATTACACGAGCAACTAGAAGTGCAAAGACAGCTGCAACTACGGATAGAAGCACAAGGAAAGTACTTGAAGAAGATAATTGAAGAGCAACAACGACTCAGTGGAGTACTCGGCGAACCCTCAGCCCCAGTAACGGGCGATTCAGATCCTGCAACCCCTGCCCCAACATCTGAGTCTCCTCTTCAAGACAAGTCTGGCAAGGACTGTGGACCAGACAAAAGTCTCTCAGTTGACGAGTCTCTCTCATCTTACCGGGAGCCTTTAACACCAGACTCAGGGTGTAACATTGGGTCTCCAGATGAGAGCACAGGAGAGGAGAGATTATCAAAGAAGCCTCGATTGGTGAGAGGTGCAGCTGGTTATACACCTGATATTGTAGTGGGTCACCCAATACTAGAATCAGGCTTGAACACTTCTTACCATCAGTCAGACCATGTCCTCGCCTTTGACCAGCCATCTACATCACTGCTTGGGGCCGAAGAACAGTTGGATAAGGTTTCAGGAGATAATCTTTGA

Protein Analysis

286

Amino Acids

31.07

Weight (kDa)

5.64

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 52 - 98 3.3e-23 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 485
AcuI CTGAAG 2 cut(s) 255, 333
AfaI GTAC 3 cut(s) 156, 410, 453
AfiI CCNNNNNNNGG 3 cut(s) 478, 479, 620
AgsI TTSAA 4 cut(s) 415, 428, 530, 754
AhdI GACNNNNNGTC 1 cut(s) 292
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AluBI AGCT 4 cut(s) 70, 122, 379, 701
AluI AGCT 4 cut(s) 70, 122, 379, 701
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 4 cut(s) 525, 572, 588, 642
AlwI GGATC 1 cut(s) 485
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 3 cut(s) 19, 109, 819
ApeKI GCWGC 2 cut(s) 379, 698
AspS9I GGNCC 4 cut(s) 20, 110, 554, 819
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 2 cut(s) 700, 722
AvaII GGWCC 1 cut(s) 554
BauI CACGAG 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 653
BbvCI CCTCAGC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 366, 710
BccI CCATC 4 cut(s) 142, 325, 774, 808
BceAI ACGGC 2 cut(s) 77, 304
BcnI CCSGG 1 cut(s) 599
BcoDI GTCTC 4 cut(s) 525, 572, 588, 642
BfaI CTAG 3 cut(s) 30, 362, 740
BisI GCNGC 2 cut(s) 380, 699
BlsI GCNGC 2 cut(s) 381, 700
BmcAI AGTACT 2 cut(s) 410, 453
Bme1390I CCNGG 1 cut(s) 599
Bme18I GGWCC 1 cut(s) 554
BmeRI GACNNNNNGTC 1 cut(s) 292
BmgT120I GGNCC 4 cut(s) 20, 110, 554, 819
BmiI GGNNCC 3 cut(s) 22, 603, 820
BmrFI CCNGG 1 cut(s) 599
BmrI ACTGGG 1 cut(s) 467
BmsI GCATC 2 cut(s) 47, 79
BmuI ACTGGG 1 cut(s) 467
BoxI GACNNNNGTC 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 222
BplI GAGNNNNNCTC 4 cut(s) 258, 290, 572, 604
BpmI CTGGAG 2 cut(s) 285, 624
Bpu10I CCTNAGC 1 cut(s) 466
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 599
BsaBI GATNNNNATC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 642
Bsc4I CCNNNNNNNGG 3 cut(s) 478, 479, 620
Bse1I ACTGG 1 cut(s) 473
Bse8I GATNNNNATC 1 cut(s) 489
BseGI GGATG 1 cut(s) 38
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 3 cut(s) 478, 479, 620
BseMII CTCAG 5 cut(s) 457, 480, 507, 585, 633
BseNI ACTGG 1 cut(s) 473
BseRI GAGGAG 2 cut(s) 513, 674
BseXI GCAGC 2 cut(s) 366, 710
BsgI GTGCAG 1 cut(s) 717
BshFI GGCC 3 cut(s) 21, 111, 821
BsiHKAI GWGCWC 1 cut(s) 653
BsiSI CCGG 1 cut(s) 598
BslI CCNNNNNNNGG 3 cut(s) 478, 479, 620
BsmAI GTCTC 4 cut(s) 525, 572, 588, 642
BsmI GAATGC 1 cut(s) 306
BsnI GGCC 3 cut(s) 21, 111, 821
Bso31I GGTCTC 1 cut(s) 642
Bsp1286I GDGCHC 1 cut(s) 653
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 1 cut(s) 490
BspANI GGCC 3 cut(s) 21, 111, 821
BspCNI CTCAG 5 cut(s) 456, 479, 508, 584, 632
BspLI GGNNCC 3 cut(s) 22, 603, 820
BspPI GGATC 1 cut(s) 485
BspQI GCTCTTC 1 cut(s) 423
BspTNI GGTCTC 1 cut(s) 642
BsrGI TGTACA 1 cut(s) 154
BsrI ACTGG 1 cut(s) 473
BssMI GATC 1 cut(s) 490
BssSI CACGAG 1 cut(s) 353
Bst2BI CACGAG 1 cut(s) 353
Bst4CI ACNGT 2 cut(s) 551, 831
Bst6I CTCTTC 2 cut(s) 423, 531
BstAPI GCANNNNNTGC 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 154
BstDEI CTNAG 6 cut(s) 140, 443, 466, 516, 571, 619
BstEII GGTNACC 1 cut(s) 728
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 4 cut(s) 525, 572, 588, 642
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 3 cut(s) 61, 376, 503
BstPAI GACNNNNGTC 1 cut(s) 564
BstPI GGTNACC 1 cut(s) 728
BstSCI CCNGG 1 cut(s) 597
BstV1I GCAGC 2 cut(s) 366, 710
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 3 cut(s) 21, 111, 821
BtsCI GGATG 1 cut(s) 38
BtsI GCAGTG 1 cut(s) 809
BtsIMutI CAGTG 2 cut(s) 451, 809
CaiI CAGNNNCTG 1 cut(s) 494
Cfr13I GGNCC 4 cut(s) 20, 110, 554, 819
CseI GACGC 1 cut(s) 70
Csp6I GTAC 3 cut(s) 155, 409, 452
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 5 cut(s) 35, 65, 74, 176, 779
CviQI GTAC 3 cut(s) 155, 409, 452
DdeI CTNAG 6 cut(s) 140, 443, 466, 516, 571, 619
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
DriI GACNNNNNGTC 1 cut(s) 292
Eam1104I CTCTTC 2 cut(s) 423, 531
Eam1105I GACNNNNNGTC 1 cut(s) 292
EarI CTCTTC 2 cut(s) 423, 531
Eco31I GGTCTC 1 cut(s) 642
Eco47I GGWCC 1 cut(s) 554
Eco57I CTGAAG 2 cut(s) 255, 333
Eco91I GGTNACC 1 cut(s) 728
EcoO109I RGGNCCY 1 cut(s) 20
EcoO65I GGTNACC 1 cut(s) 728
EcoT22I ATGCAT 1 cut(s) 40
FaeI CATG 5 cut(s) 38, 68, 77, 179, 782
FaiI YATR 9 cut(s) 36, 66, 75, 170, 172, 177, 272, 708, 780
FalI AAGNNNNNCTT 4 cut(s) 123, 155, 173, 205
FatI CATG 5 cut(s) 34, 64, 73, 175, 778
Fnu4HI GCNGC 2 cut(s) 380, 699
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 380, 699
FspBI CTAG 3 cut(s) 30, 362, 740
GluI GCNGC 2 cut(s) 380, 699
GsuI CTGGAG 2 cut(s) 285, 624
HaeIII GGCC 3 cut(s) 21, 111, 821
HapII CCGG 1 cut(s) 598
HgaI GACGC 1 cut(s) 70
Hin1II CATG 5 cut(s) 38, 68, 77, 179, 782
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 9 cut(s) 184, 224, 260, 441, 485, 518, 581, 617, 743
HpaII CCGG 1 cut(s) 598
HphI GGTGA 2 cut(s) 700, 722
Hpy166II GTNNAC 3 cut(s) 155, 554, 577
Hpy188I TCNGA 5 cut(s) 235, 342, 490, 517, 775
Hpy188III TCNNGA 7 cut(s) 181, 221, 264, 297, 530, 641, 846
Hpy8I GTNNAC 3 cut(s) 155, 554, 577
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 551, 831
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 8 cut(s) 38, 209, 304, 328, 370, 382, 497, 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 376, 503
HpyF3I CTNAG 6 cut(s) 140, 443, 466, 516, 571, 619
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 5 cut(s) 38, 68, 77, 179, 782
Kzo9I GATC 1 cut(s) 490
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 601
Lsp1109I GCAGC 2 cut(s) 366, 710
LweI GCATC 2 cut(s) 47, 79
MaeI CTAG 3 cut(s) 30, 362, 740
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 4 cut(s) 185, 475, 626, 728
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 7 cut(s) 209, 222, 427, 430, 440, 518, 836
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 653
MluCI AATT 2 cut(s) 25, 423
MlyI GAGTC 5 cut(s) 193, 435, 527, 590, 611
MmeI TCCRAC 3 cut(s) 38, 264, 813
MnlI CCTC 8 cut(s) 11, 329, 475, 534, 652, 686, 690, 794
Mph1103I ATGCAT 1 cut(s) 40
MseI TTAA 2 cut(s) 164, 608
MspA1I CMGCKG 2 cut(s) 379, 701
MspI CCGG 1 cut(s) 598
MspR9I CCNGG 1 cut(s) 599
Mva1269I GAATGC 1 cut(s) 306
MwoI GCNNNNNNNGC 3 cut(s) 61, 376, 503
NciI CCSGG 1 cut(s) 599
NdeII GATC 1 cut(s) 490
NlaIII CATG 5 cut(s) 38, 68, 77, 179, 782
NlaIV GGNNCC 3 cut(s) 22, 603, 820
NmeAIII GCCGAG 1 cut(s) 435
NmuCI GTSAC 2 cut(s) 185, 728
NsiI ATGCAT 1 cut(s) 40
PciSI GCTCTTC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 1 cut(s) 306
PfeI GAWTC 4 cut(s) 224, 260, 485, 743
PflFI GACNNNGTC 1 cut(s) 779
PkrI GCNGC 2 cut(s) 381, 700
PleI GAGTC 5 cut(s) 192, 435, 526, 589, 611
PpsI GAGTC 5 cut(s) 192, 435, 526, 589, 611
PshAI GACNNNNGTC 1 cut(s) 564
PspEI GGTNACC 1 cut(s) 728
PspN4I GGNNCC 3 cut(s) 22, 603, 820
PspPI GGNCC 4 cut(s) 20, 110, 554, 819
PsrI GAACNNNNNNTAC 2 cut(s) 746, 778
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 490
PsyI GACNNNGTC 1 cut(s) 779
PvuII CAGCTG 2 cut(s) 379, 701
RsaI GTAC 3 cut(s) 156, 410, 453
RsaNI GTAC 3 cut(s) 155, 409, 452
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 164, 608
SatI GCNGC 2 cut(s) 380, 699
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 4 cut(s) 20, 110, 554, 819
ScaI AGTACT 2 cut(s) 410, 453
SchI GAGTC 5 cut(s) 193, 435, 527, 590, 611
ScrFI CCNGG 1 cut(s) 599
SduI GDGCHC 1 cut(s) 653
SetI ASST 8 cut(s) 52, 72, 124, 381, 697, 703, 715, 843
SfaNI GCATC 2 cut(s) 47, 79
SinI GGWCC 1 cut(s) 554
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 2 cut(s) 25, 423
SspMI CTAG 3 cut(s) 30, 362, 740
StyD4I CCNGG 1 cut(s) 597
TaaI ACNGT 2 cut(s) 551, 831
TaiI ACGT 1 cut(s) 52
TaqI TCGA 2 cut(s) 202, 682
TasI AATT 2 cut(s) 25, 423
TatI WGTACW 3 cut(s) 154, 408, 451
TfiI GAWTC 4 cut(s) 224, 260, 485, 743
Tru1I TTAA 2 cut(s) 164, 608
Tru9I TTAA 2 cut(s) 164, 608
TscAI CASTG 2 cut(s) 451, 816
TseFI GTSAC 2 cut(s) 185, 728
TseI GCWGC 2 cut(s) 379, 698
Tsp45I GTSAC 2 cut(s) 185, 728
TspDTI ATGAA 1 cut(s) 90
TspGWI ACGGA 2 cut(s) 30, 403
TspRI CASTG 2 cut(s) 451, 816
Tth111I GACNNNGTC 1 cut(s) 779
VpaK11BI GGWCC 1 cut(s) 554
XspI CTAG 3 cut(s) 30, 362, 740
ZrmI AGTACT 2 cut(s) 410, 453
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.