Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004369

Physical Location & Seq

Genomic Coordinates Forward (+)

41703383 .. 41707482

Gene Structure 4100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1342100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGATCTCGTCAGTGGAGGAAACAGTCTCAACAATTCTAACCTTGCCTCAAAACAGCGATTGCGTTGGACGCATGAGCTTCATGAACGCTTTGTTGATGCTGTGGCACAACTTGGTGGCCCAGATCGTGCTACGCCCAAAGGTGTGTTGAGAGTGATGGGTGTACAAGGTTTAACCATATACCATGTAAAAAGCCATTTACAGAAATATCGACTTGCAAAATACCTACCAGACTCCTCATCTGATGGGAAAAAAGCTGACAAGAAAGAACCTGGGGATGTGCTTTCCAATTTGGATGGTTCACCTGGAATGCAAATCACAGAAGCACTCAAGCTGCAGATGGAGGTGCAGAAGCGACTACATGAGCAATTAGAGGTACAGAGACAGCTACAGTTACGGATAGAAGCCCAAGGTAAATACTTGAAGAAAATTATTGAAGAGCAGCAGCGACTTAGTGGAGTTCTTTCAGAAGCACCTGGCTCTGGGCACCTAGCTCGTTTGTCAAGTGACAATTGCCCAGAATCTGACAACAAGACTGATCCTGCAACTCCTGCCCCGACCTCAGAGTGCCCCCTCCAAGACAAGGCCGCCAAGGAATGTGCGCCAGCCAAGAGCATTTCCATTGATGAATCTTTCTCATCGCATCGTGAACCCTTAACTCCAGATTCAGGTTGTCATGTTGGTTCTCCAGCTGAGAGTCCAAAAGCAGAGAGGTTGACAAAGAAGCTACGGGTTAACATAGGTGAAGCATTCACTGATCCAGAAGCGGTGCTTACACACCAGATACTAGAGTCGAGCTTAAACTCTTCCTACCAGCAAGGACATACAGCTTTCCTGCCTAGGGAGCAGTTTCATCCCTCATCCGGGATTTCATTCAGGAATGAAAATCAATTGGAAAAAGATGCAGGCAGTGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

307

Amino Acids

33.62

Weight (kDa)

6.43

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	20 - 71	1.6e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	104 - 150	4.9e-23	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01060 AT2G01060
fragaria_vesca	FvH4_3g00070 FvH4_3g00070 FvH4_3g00070
malus_domestica	MD05G1364400.v1.1 MD10G1342100.v1.1
prunus_persica	Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1
pyrus_communis	pycom10g29150
rosa_chinensis	RchiOBHm_Chr5g0000071 RchiOBHm_Chr5g0000091
rosa_laevigata	RLG00000030841
rosa_multiflora	Rmu_ssc0000243.1_g000024
rosa_roxburghii	Rroxscaffold_1G00076000
rosa_rugosa	Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381400
rosa_samantha	Rh5AG000600 Rh5CG000700 Rh5DG000600
rosa_wichuraiana	Rw5G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	486
AciI	CCGC	2 cut(s)	588, 767
AclWI	GGATC	3 cut(s)	12, 533, 752
AfaI	GTAC	2 cut(s)	165, 378
AfiI	CCNNNNNNNGG	6 cut(s)	482, 583, 668, 841, 863, 864
AflIII	ACRYGT	1 cut(s)	915
AgsI	TTSAA	2 cut(s)	424, 437
AjnI	CCWGG	3 cut(s)	271, 304, 475
AluBI	AGCT	9 cut(s)	79, 257, 334, 388, 494, 692, 727, 798, 830
AluI	AGCT	9 cut(s)	79, 257, 334, 388, 494, 692, 727, 798, 830
Alw26I	GTCTC	2 cut(s)	32, 376
AlwI	GGATC	3 cut(s)	12, 533, 752
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	118, 585
ApeKI	GCWGC	3 cut(s)	334, 442, 445
AspA2I	CCTAGG	1 cut(s)	839
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	865
AsuHPI	GGTGA	2 cut(s)	294, 755
AvrII	CCTAGG	1 cut(s)	839
BaeGI	GKGCMC	2 cut(s)	489, 572
BaeI	ACNNNNGTAYC	2 cut(s)	776, 809
BanI	GGYRCC	1 cut(s)	486
BbvI	GCAGC	3 cut(s)	321, 454, 457
BccI	CCATC	4 cut(s)	151, 239, 290, 334
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	3 cut(s)	273, 306, 477
BcnI	CCSGG	1 cut(s)	865
BcoDI	GTCTC	2 cut(s)	32, 376
BfaI	CTAG	3 cut(s)	491, 788, 840
BfmI	CTRYAG	2 cut(s)	335, 389
BisI	GCNGC	4 cut(s)	335, 443, 446, 588
BlnI	CCTAGG	1 cut(s)	839
BlsI	GCNGC	4 cut(s)	336, 444, 447, 589
Bme1390I	CCNGG	4 cut(s)	273, 306, 477, 865
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	488
BmrFI	CCNGG	4 cut(s)	273, 306, 477, 865
BmsI	GCATC	3 cut(s)	88, 652, 892
BpmI	CTGGAG	2 cut(s)	645, 672
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	865
BsaJI	CCNNGG	4 cut(s)	272, 409, 591, 839
Bsc4I	CCNNNNNNNGG	6 cut(s)	482, 583, 668, 841, 863, 864
BseBI	CCWGG	3 cut(s)	273, 306, 477
BseDI	CCNNGG	4 cut(s)	272, 409, 591, 839
BseGI	GGATG	4 cut(s)	283, 301, 853, 860
BseLI	CCNNNNNNNGG	6 cut(s)	482, 583, 668, 841, 863, 864
BseMII	CTCAG	2 cut(s)	576, 684
BseRI	GAGGAG	1 cut(s)	226
BseSI	GKGCMC	2 cut(s)	489, 572
BseXI	GCAGC	3 cut(s)	321, 454, 457
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	2 cut(s)	120, 587
BshNI	GGYRCC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	864
BslI	CCNNNNNNNGG	6 cut(s)	482, 583, 668, 841, 863, 864
BsmAI	GTCTC	2 cut(s)	32, 376
BsmI	GAATGC	2 cut(s)	315, 749
BsnI	GGCC	2 cut(s)	120, 587
Bsp1286I	GDGCHC	2 cut(s)	489, 572
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	4 cut(s)	4, 124, 538, 757
BspACI	CCGC	2 cut(s)	588, 767
BspANI	GGCC	2 cut(s)	120, 587
BspCNI	CTCAG	2 cut(s)	575, 685
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	488
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	3 cut(s)	12, 533, 752
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	163
BssECI	CCNNGG	4 cut(s)	272, 409, 591, 839
BssMI	GATC	4 cut(s)	4, 124, 538, 757
BssT1I	CCWWGG	3 cut(s)	409, 591, 839
Bst2UI	CCWGG	3 cut(s)	273, 306, 477
Bst4CI	ACNGT	2 cut(s)	26, 393
Bst6I	CTCTTC	2 cut(s)	432, 811
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	606, 907
BstDEI	CTNAG	3 cut(s)	452, 562, 693
BstF5I	GGATG	4 cut(s)	283, 301, 853, 860
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	4 cut(s)	7, 127, 541, 760
BstMAI	GTCTC	2 cut(s)	32, 376
BstMBI	GATC	4 cut(s)	4, 124, 538, 757
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 551, 844
BstNI	CCWGG	3 cut(s)	273, 306, 477
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	4 cut(s)	271, 304, 475, 863
BstSFI	CTRYAG	2 cut(s)	335, 389
BstSLI	GKGCMC	2 cut(s)	489, 572
BstV1I	GCAGC	3 cut(s)	321, 454, 457
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	120, 587
BtgZI	GCGATG	1 cut(s)	624
BtsCI	GGATG	4 cut(s)	283, 301, 853, 860
BtsI	GCAGTG	1 cut(s)	916
BtsIMutI	CAGTG	3 cut(s)	19, 753, 916
Cac8I	GCNNGC	2 cut(s)	606, 907
CaiI	CAGNNNCTG	1 cut(s)	524
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	164, 377
CviAII	CATG	6 cut(s)	74, 83, 185, 362, 677, 916
CviQI	GTAC	2 cut(s)	164, 377
DdeI	CTNAG	3 cut(s)	452, 562, 693
DpnI	GATC	4 cut(s)	6, 126, 540, 759
DpnII	GATC	4 cut(s)	4, 124, 538, 757
Eam1104I	CTCTTC	2 cut(s)	432, 811
EarI	CTCTTC	2 cut(s)	432, 811
Eco130I	CCWWGG	3 cut(s)	409, 591, 839
EcoRII	CCWGG	3 cut(s)	271, 304, 475
EcoT14I	CCWWGG	3 cut(s)	409, 591, 839
ErhI	CCWWGG	3 cut(s)	409, 591, 839
FaeI	CATG	6 cut(s)	77, 86, 188, 365, 680, 919
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FatI	CATG	6 cut(s)	73, 82, 184, 361, 676, 915
Fnu4HI	GCNGC	4 cut(s)	335, 443, 446, 588
FokI	GGATG	4 cut(s)	290, 308, 840, 847
Fsp4HI	GCNGC	4 cut(s)	335, 443, 446, 588
FspBI	CTAG	3 cut(s)	491, 788, 840
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	4 cut(s)	335, 443, 446, 588
GsuI	CTGGAG	2 cut(s)	645, 672
HaeIII	GGCC	2 cut(s)	120, 587
HapII	CCGG	1 cut(s)	864
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	6 cut(s)	77, 86, 188, 365, 680, 919
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HincII	GTYRAC	2 cut(s)	717, 736
HindII	GTYRAC	2 cut(s)	717, 736
HinfI	GANTC	6 cut(s)	233, 521, 629, 665, 697, 791
HpaI	GTTAAC	1 cut(s)	736
HpaII	CCGG	1 cut(s)	864
HphI	GGTGA	2 cut(s)	294, 755
Hpy166II	GTNNAC	5 cut(s)	164, 302, 650, 717, 736
Hpy188I	TCNGA	4 cut(s)	244, 469, 526, 565
Hpy188III	TCNNGA	5 cut(s)	83, 647, 662, 761, 877
Hpy8I	GTNNAC	5 cut(s)	164, 302, 650, 717, 736
HpyCH4III	ACNGT	2 cut(s)	26, 393
HpyCH4V	TGCA	6 cut(s)	218, 313, 337, 349, 545, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 551, 844
HpyF3I	CTNAG	3 cut(s)	452, 562, 693
Hsp92II	CATG	6 cut(s)	77, 86, 188, 365, 680, 919
HspAI	GCGC	1 cut(s)	602
KspAI	GTTAAC	1 cut(s)	736
Kzo9I	GATC	4 cut(s)	4, 124, 538, 757
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	1 cut(s)	844
Lsp1109I	GCAGC	3 cut(s)	321, 454, 457
LweI	GCATC	3 cut(s)	88, 652, 892
MaeI	CTAG	3 cut(s)	491, 788, 840
MaeIII	GTNAC	3 cut(s)	393, 506, 911
MalI	GATC	4 cut(s)	6, 126, 540, 759
MboI	GATC	4 cut(s)	4, 124, 538, 757
MboII	GAAGA	3 cut(s)	436, 449, 798
MfeI	CAATTG	2 cut(s)	511, 890
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	489, 572
MluCI	AATT	6 cut(s)	34, 289, 368, 429, 511, 890
MlyI	GAGTC	3 cut(s)	227, 706, 800
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	9 cut(s)	11, 58, 247, 337, 367, 571, 584, 705, 868
MseI	TTAA	4 cut(s)	173, 656, 735, 800
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	1 cut(s)	864
MspR9I	CCNGG	4 cut(s)	273, 306, 477, 865
MunI	CAATTG	2 cut(s)	511, 890
Mva1269I	GAATGC	2 cut(s)	315, 749
MvaI	CCWGG	3 cut(s)	273, 306, 477
MwoI	GCNNNNNNNGC	3 cut(s)	70, 551, 844
NciI	CCSGG	1 cut(s)	865
NdeII	GATC	4 cut(s)	4, 124, 538, 757
NlaIII	CATG	6 cut(s)	77, 86, 188, 365, 680, 919
NlaIV	GGNNCC	1 cut(s)	488
NmuCI	GTSAC	2 cut(s)	506, 911
NspI	RCATGY	1 cut(s)	919
PagI	TCATGA	1 cut(s)	82
PciI	ACATGT	1 cut(s)	915
PciSI	GCTCTTC	1 cut(s)	432
PctI	GAATGC	2 cut(s)	315, 749
PfeI	GAWTC	3 cut(s)	521, 629, 665
PfoI	TCCNGGA	1 cut(s)	863
PkrI	GCNGC	4 cut(s)	336, 444, 447, 589
PleI	GAGTC	3 cut(s)	227, 705, 799
PpsI	GAGTC	3 cut(s)	227, 705, 799
PscI	ACATGT	1 cut(s)	915
Psp6I	CCWGG	3 cut(s)	271, 304, 475
PspGI	CCWGG	3 cut(s)	271, 304, 475
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	2 cut(s)	165, 378
RsaNI	GTAC	2 cut(s)	164, 377
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	173, 656, 735, 800
SatI	GCNGC	4 cut(s)	335, 443, 446, 588
Sau3AI	GATC	4 cut(s)	4, 124, 538, 757
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	3 cut(s)	227, 706, 800
ScrFI	CCNGG	4 cut(s)	273, 306, 477, 865
SduI	GDGCHC	2 cut(s)	489, 572
SfaNI	GCATC	3 cut(s)	88, 652, 892
SfcI	CTRYAG	2 cut(s)	335, 389
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	6 cut(s)	34, 289, 368, 429, 511, 890
SsiI	CCGC	2 cut(s)	588, 767
SspMI	CTAG	3 cut(s)	491, 788, 840
StyD4I	CCNGG	4 cut(s)	271, 304, 475, 863
StyI	CCWWGG	3 cut(s)	409, 591, 839
TaaI	ACNGT	2 cut(s)	26, 393
TaqI	TCGA	2 cut(s)	211, 794
TasI	AATT	6 cut(s)	34, 289, 368, 429, 511, 890
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	3 cut(s)	521, 629, 665
Tru1I	TTAA	4 cut(s)	173, 656, 735, 800
Tru9I	TTAA	4 cut(s)	173, 656, 735, 800
TscAI	CASTG	3 cut(s)	19, 760, 916
TseFI	GTSAC	2 cut(s)	506, 911
TseI	GCWGC	3 cut(s)	334, 442, 445
Tsp45I	GTSAC	2 cut(s)	506, 911
TspDTI	ATGAA	6 cut(s)	71, 99, 642, 842, 861, 897
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	3 cut(s)	19, 760, 916
XceI	RCATGY	1 cut(s)	919
XmaJI	CCTAGG	1 cut(s)	839
XspI	CTAG	3 cut(s)	491, 788, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.