Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004369

Physical Location & Seq

Genomic Coordinates Forward (+)

47930576 .. 47934695

Gene Structure 4120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1364400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGATGCCGTCAGTGGAGGAAACAGTCTTAACAACCCTAACCTTGCCTCAAAACAGCGATTGCGTTGGACGCACGAGCTTCATGAACGCTTTATTGATGCCGTTGTACAACTTGGTGGCCCAGATCGGGCTACGCCCAAAGGTGTTTTGAGAGTGATGGGTGTACAAGGTTTAACCATATACCATGTAAAAAGCCATTTACAGAAATATCGACTTGCAAAATACCTACCAGACTCCTCATCTGATGGGAAAAAAGCTGACAAGAAAGAACCTGGGGATGTGCTTTCCAATTTGGATGGTTCATCTGGAATGCAAATCACAGAAGCACTCAAGCTGCAGATGGAGGTGCAGAAGCGACTACATGAGCAATTAGAGGTACAGAGACAGCTACAATTACGGATAGAAGCCCAAGGTAAATACTTGAAAAAAATTATTGAAGAGCAACAGCGACTTAGTGGAGTCCTTTCAGAAGCACCTGGCTCTGGGCACCTAGTCCGTTTGTCAAGTGACAATTGCCCAGAATCTGACAACAAGACTGACCCAGCAACTCCTGCCCCGACCTCAGAGTGCCCCCTCCAAGACAAGGCCGCCAGGGAATGTGCGCCAGCCAAGAGCATTTCAATTGATGAATCTTTCTCATCTCGTCGTGAACCCTTAACTCCAGATTCAGTTTGTCATGTTGGTTCTCCAGCTGAGAGTCCAAAAGCAGAGAGGTTGACAAAGAAGCGACGAGTTAACATAGGTGAAGCATTCTCTGATCCTGAAGTGGTGCTTACACACCAGATACTAGAGTCGAGCTTAGACTCTTCTTACCAGCAAGGACATACAGCTTTCCTACCCAGGGAGCAGTTTCATCCCTCATCCGGGATTTCATTCCGGAATGAAAATCAATTGGAAAAAGTTGCAGGCAGTGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

307

Amino Acids

33.78

Weight (kDa)

6.81

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	20 - 71	7.5e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	104 - 150	4.9e-23	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01060 AT2G01060
fragaria_vesca	FvH4_3g00070 FvH4_3g00070 FvH4_3g00070
malus_domestica	MD05G1364400.v1.1 MD10G1342100.v1.1
prunus_persica	Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1
pyrus_communis	pycom10g29150
rosa_chinensis	RchiOBHm_Chr5g0000071 RchiOBHm_Chr5g0000091
rosa_laevigata	RLG00000030841
rosa_multiflora	Rmu_ssc0000243.1_g000024
rosa_roxburghii	Rroxscaffold_1G00076000
rosa_rugosa	Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381400
rosa_samantha	Rh5AG000600 Rh5CG000700 Rh5DG000600
rosa_wichuraiana	Rw5G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	486
AccIII	TCCGGA	1 cut(s)	876
AciI	CCGC	1 cut(s)	588
AclWI	GGATC	1 cut(s)	752
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	3 cut(s)	108, 165, 378
AfiI	CCNNNNNNNGG	6 cut(s)	127, 482, 583, 841, 863, 864
AflIII	ACRYGT	1 cut(s)	915
AgsI	TTSAA	3 cut(s)	424, 437, 621
AjnI	CCWGG	4 cut(s)	271, 475, 590, 839
AluBI	AGCT	7 cut(s)	79, 257, 334, 388, 692, 798, 830
AluI	AGCT	7 cut(s)	79, 257, 334, 388, 692, 798, 830
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	1 cut(s)	752
AlwNI	CAGNNNCTG	1 cut(s)	524
Aor13HI	TCCGGA	1 cut(s)	876
AoxI	GGCC	2 cut(s)	118, 585
ApeKI	GCWGC	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	865
AsuHPI	GGTGA	1 cut(s)	755
BaeGI	GKGCMC	2 cut(s)	489, 572
BaeI	ACNNNNGTAYC	2 cut(s)	776, 809
BanI	GGYRCC	1 cut(s)	486
BauI	CACGAG	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	4 cut(s)	151, 239, 290, 334
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	4 cut(s)	273, 477, 592, 841
BcnI	CCSGG	1 cut(s)	865
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	2 cut(s)	491, 788
BfmI	CTRYAG	1 cut(s)	335
BisI	GCNGC	2 cut(s)	335, 588
BlsI	GCNGC	2 cut(s)	336, 589
Bme1390I	CCNGG	5 cut(s)	273, 477, 592, 841, 865
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	488
BmrFI	CCNGG	5 cut(s)	273, 477, 592, 841, 865
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	2 cut(s)	645, 672
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	865
BsaJI	CCNNGG	5 cut(s)	272, 409, 591, 839, 840
BsaWI	WCCGGW	1 cut(s)	876
Bsc4I	CCNNNNNNNGG	6 cut(s)	127, 482, 583, 841, 863, 864
BseAI	TCCGGA	1 cut(s)	876
BseBI	CCWGG	4 cut(s)	273, 477, 592, 841
BseDI	CCNNGG	5 cut(s)	272, 409, 591, 839, 840
BseGI	GGATG	5 cut(s)	10, 283, 301, 853, 860
BseLI	CCNNNNNNNGG	6 cut(s)	127, 482, 583, 841, 863, 864
BseMII	CTCAG	2 cut(s)	576, 684
BseRI	GAGGAG	1 cut(s)	226
BseSI	GKGCMC	2 cut(s)	489, 572
BseXI	GCAGC	1 cut(s)	321
BseYI	CCCAGC	1 cut(s)	541
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	2 cut(s)	120, 587
BshNI	GGYRCC	1 cut(s)	486
BsiSI	CCGG	2 cut(s)	864, 877
BslI	CCNNNNNNNGG	6 cut(s)	127, 482, 583, 841, 863, 864
BsmAI	GTCTC	1 cut(s)	376
BsmI	GAATGC	2 cut(s)	315, 749
BsnI	GGCC	2 cut(s)	120, 587
Bsp1286I	GDGCHC	2 cut(s)	489, 572
Bsp13I	TCCGGA	1 cut(s)	876
Bsp1407I	TGTACA	2 cut(s)	106, 163
Bsp143I	GATC	2 cut(s)	124, 757
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	2 cut(s)	120, 587
BspCNI	CTCAG	2 cut(s)	575, 685
BspEI	TCCGGA	1 cut(s)	876
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	488
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	1 cut(s)	752
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	486
BsrGI	TGTACA	2 cut(s)	106, 163
BssECI	CCNNGG	5 cut(s)	272, 409, 591, 839, 840
BssMI	GATC	2 cut(s)	124, 757
BssSI	CACGAG	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	409
Bst2BI	CACGAG	1 cut(s)	74
Bst2UI	CCWGG	4 cut(s)	273, 477, 592, 841
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	2 cut(s)	432, 811
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstAUI	TGTACA	2 cut(s)	106, 163
BstC8I	GCNNGC	2 cut(s)	606, 907
BstDEI	CTNAG	4 cut(s)	452, 562, 693, 799
BstF5I	GGATG	5 cut(s)	10, 283, 301, 853, 860
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	2 cut(s)	127, 760
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	2 cut(s)	124, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 551
BstNI	CCWGG	4 cut(s)	273, 477, 592, 841
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	5 cut(s)	271, 475, 590, 839, 863
BstSFI	CTRYAG	1 cut(s)	335
BstSLI	GKGCMC	2 cut(s)	489, 572
BstV1I	GCAGC	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	120, 587
BtsCI	GGATG	5 cut(s)	10, 283, 301, 853, 860
BtsI	GCAGTG	1 cut(s)	916
BtsIMutI	CAGTG	2 cut(s)	19, 916
Cac8I	GCNNGC	2 cut(s)	606, 907
CaiI	CAGNNNCTG	1 cut(s)	524
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	3 cut(s)	107, 164, 377
CviAII	CATG	5 cut(s)	83, 185, 362, 677, 916
CviQI	GTAC	3 cut(s)	107, 164, 377
DdeI	CTNAG	4 cut(s)	452, 562, 693, 799
DpnI	GATC	2 cut(s)	126, 759
DpnII	GATC	2 cut(s)	124, 757
Eam1104I	CTCTTC	2 cut(s)	432, 811
EarI	CTCTTC	2 cut(s)	432, 811
Eco130I	CCWWGG	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	783
EcoRII	CCWGG	4 cut(s)	271, 475, 590, 839
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	5 cut(s)	86, 188, 365, 680, 919
FaiI	YATR	9 cut(s)	84, 179, 181, 186, 363, 678, 740, 825, 917
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FatI	CATG	5 cut(s)	82, 184, 361, 676, 915
Fnu4HI	GCNGC	2 cut(s)	335, 588
FokI	GGATG	5 cut(s)	17, 290, 308, 840, 847
Fsp4HI	GCNGC	2 cut(s)	335, 588
FspBI	CTAG	2 cut(s)	491, 788
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	2 cut(s)	335, 588
GsaI	CCCAGC	1 cut(s)	545
GsuI	CTGGAG	2 cut(s)	645, 672
HaeIII	GGCC	2 cut(s)	120, 587
HapII	CCGG	2 cut(s)	864, 877
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	5 cut(s)	86, 188, 365, 680, 919
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HincII	GTYRAC	2 cut(s)	717, 736
HindII	GTYRAC	2 cut(s)	717, 736
HinfI	GANTC	8 cut(s)	233, 459, 521, 629, 665, 697, 791, 803
HpaI	GTTAAC	1 cut(s)	736
HpaII	CCGG	2 cut(s)	864, 877
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	4 cut(s)	164, 650, 717, 736
Hpy188I	TCNGA	5 cut(s)	244, 469, 526, 565, 757
Hpy188III	TCNNGA	6 cut(s)	83, 306, 647, 662, 761, 877
Hpy8I	GTNNAC	4 cut(s)	164, 650, 717, 736
Hpy99I	CGWCG	2 cut(s)	648, 732
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	5 cut(s)	218, 313, 337, 349, 905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 551
HpyF3I	CTNAG	4 cut(s)	452, 562, 693, 799
Hsp92II	CATG	5 cut(s)	86, 188, 365, 680, 919
HspAI	GCGC	1 cut(s)	602
Kpn2I	TCCGGA	1 cut(s)	876
KspAI	GTTAAC	1 cut(s)	736
Kzo9I	GATC	2 cut(s)	124, 757
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	1 cut(s)	844
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	491, 788
MaeIII	GTNAC	2 cut(s)	506, 911
MalI	GATC	2 cut(s)	126, 759
MboI	GATC	2 cut(s)	124, 757
MboII	GAAGA	2 cut(s)	449, 798
MfeI	CAATTG	3 cut(s)	511, 621, 890
MhlI	GDGCHC	2 cut(s)	489, 572
MluCI	AATT	7 cut(s)	289, 368, 392, 429, 511, 621, 890
MlyI	GAGTC	5 cut(s)	227, 468, 706, 797, 800
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	9 cut(s)	11, 58, 247, 337, 367, 571, 584, 705, 868
MroI	TCCGGA	1 cut(s)	876
MseI	TTAA	4 cut(s)	30, 173, 656, 735
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	2 cut(s)	864, 877
MspR9I	CCNGG	5 cut(s)	273, 477, 592, 841, 865
MunI	CAATTG	3 cut(s)	511, 621, 890
Mva1269I	GAATGC	2 cut(s)	315, 749
MvaI	CCWGG	4 cut(s)	273, 477, 592, 841
MwoI	GCNNNNNNNGC	2 cut(s)	70, 551
NciI	CCSGG	1 cut(s)	865
NdeII	GATC	2 cut(s)	124, 757
NlaIII	CATG	5 cut(s)	86, 188, 365, 680, 919
NlaIV	GGNNCC	1 cut(s)	488
NmuCI	GTSAC	2 cut(s)	506, 911
NspI	RCATGY	1 cut(s)	919
PagI	TCATGA	1 cut(s)	82
PasI	CCCWGGG	1 cut(s)	840
PciI	ACATGT	1 cut(s)	915
PciSI	GCTCTTC	1 cut(s)	432
PctI	GAATGC	2 cut(s)	315, 749
PfeI	GAWTC	3 cut(s)	521, 629, 665
PfoI	TCCNGGA	1 cut(s)	863
PkrI	GCNGC	2 cut(s)	336, 589
PleI	GAGTC	5 cut(s)	227, 467, 705, 797, 799
PpsI	GAGTC	5 cut(s)	227, 467, 705, 797, 799
PscI	ACATGT	1 cut(s)	915
Psp6I	CCWGG	4 cut(s)	271, 475, 590, 839
PspFI	CCCAGC	1 cut(s)	541
PspGI	CCWGG	4 cut(s)	271, 475, 590, 839
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	3 cut(s)	108, 165, 378
RsaNI	GTAC	3 cut(s)	107, 164, 377
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	30, 173, 656, 735
SatI	GCNGC	2 cut(s)	335, 588
Sau3AI	GATC	2 cut(s)	124, 757
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	5 cut(s)	227, 468, 706, 797, 800
ScrFI	CCNGG	5 cut(s)	273, 477, 592, 841, 865
SduI	GDGCHC	2 cut(s)	489, 572
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	7 cut(s)	289, 368, 392, 429, 511, 621, 890
SsiI	CCGC	1 cut(s)	588
SspMI	CTAG	2 cut(s)	491, 788
StyD4I	CCNGG	5 cut(s)	271, 475, 590, 839, 863
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	211, 794
TasI	AATT	7 cut(s)	289, 368, 392, 429, 511, 621, 890
TatI	WGTACW	2 cut(s)	106, 163
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	3 cut(s)	521, 629, 665
Tru1I	TTAA	4 cut(s)	30, 173, 656, 735
Tru9I	TTAA	4 cut(s)	30, 173, 656, 735
TscAI	CASTG	2 cut(s)	19, 916
TseFI	GTSAC	2 cut(s)	506, 911
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	2 cut(s)	506, 911
TspDTI	ATGAA	7 cut(s)	71, 99, 291, 642, 842, 861, 897
TspGWI	ACGGA	2 cut(s)	412, 485
TspRI	CASTG	2 cut(s)	19, 916
XceI	RCATGY	1 cut(s)	919
XspI	CTAG	2 cut(s)	491, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.