Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000243.1

Orthogroup ID

OG0004369

Physical Location & Seq

Genomic Coordinates Forward (+)

84749 .. 87510

Gene Structure 2762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000243.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atggacaatgtcaatggagcgaaaagtcccagcaactctaatcttgcctcaaagcagcgactgcgttggacacatgagcttcatgaacgctttgttgatgccgtggcacaactcggtgggccagatcgtgcaacacccaaaggtgttttgagagtgatgggtgtacaaggtttaaccatataccatgtaaagagccatttacagaaatatcgacttgcaaagtacgtacccgactcctcatctgatgggggaaaagctgacaagaaagaaccaggggacatgctttccaatgtggatggttcatctggaatgcaaattacagaagcattaaagctgcaaatggaggtgcagaagcgactgcatgaacaattagaggtacagagacagctacagttacggatagaagcacaaggtaaatacttgaagaaaattatcgaagagcaacaacgacttggtggagttctttcagaagcacctgcccctgggaactccacccgtgcatcagatgataattgcccagaatctgacaaggttgacccagcaacccctgccccgacctctgagtgccccatccaagacaaggctatcaaggaacgcgcaccagccaagagcctttccgtcgatgaatcttgctcatctcgtcatgatgaaccctcgactccagattctggttgtcatgttatttctccagctgagagcccaaaagcagagaggtcgacgaagaagcaaaggtttagcatgggtgaagcattttctaatccagaagtggtgcttacacatcaaatattggagtccagcttaaactcttaccagcaagcacacaccattttcatgcccagggagcattctaatcccacatctgggatttctgtcaggaatgttgatttggaacaagttgctgggagtgatatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

304

Amino Acids

33.33

Weight (kDa)

6.38

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01060 AT2G01060
fragaria_vesca	FvH4_3g00070 FvH4_3g00070 FvH4_3g00070
malus_domestica	MD05G1364400.v1.1 MD10G1342100.v1.1
prunus_persica	Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1
pyrus_communis	pycom10g29150
rosa_chinensis	RchiOBHm_Chr5g0000071 RchiOBHm_Chr5g0000091
rosa_laevigata	RLG00000030841
rosa_multiflora	Rmu_ssc0000243.1_g000024
rosa_roxburghii	Rroxscaffold_1G00076000
rosa_rugosa	Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381400
rosa_samantha	Rh5AG000600 Rh5CG000700 Rh5DG000600
rosa_wichuraiana	Rw5G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	484
Acc36I	ACCTGC	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	716
AccII	CGCG	1 cut(s)	597
AfaI	GTAC	4 cut(s)	165, 224, 228, 378
AfiI	CCNNNNNNNGG	5 cut(s)	482, 580, 668, 860, 861
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	3 cut(s)	271, 481, 836
AjuI	GAANNNNNNNTTGG	2 cut(s)	869, 901
AluBI	AGCT	6 cut(s)	79, 257, 334, 388, 692, 798
AluI	AGCT	6 cut(s)	79, 257, 334, 388, 692, 798
Alw26I	GTCTC	1 cut(s)	376
AlwNI	CAGNNNCTG	3 cut(s)	61, 524, 668
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	2 cut(s)	55, 334
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	755
BaeGI	GKGCMC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	701
BbvI	GCAGC	2 cut(s)	67, 321
BccI	CCATC	4 cut(s)	151, 239, 290, 578
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	696, 730
BciT130I	CCWGG	3 cut(s)	273, 483, 838
BcoDI	GTCTC	1 cut(s)	376
BfmI	CTRYAG	1 cut(s)	389
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	2 cut(s)	56, 335
BlsI	GCNGC	2 cut(s)	57, 336
Bme1390I	CCNGG	3 cut(s)	273, 483, 838
BmgT120I	GGNCC	1 cut(s)	119
BmrFI	CCNGG	3 cut(s)	273, 483, 838
BmsI	GCATC	2 cut(s)	88, 509
BpmI	CTGGAG	2 cut(s)	645, 672
BsaAI	YACGTR	1 cut(s)	226
BsaJI	CCNNGG	6 cut(s)	102, 272, 481, 482, 836, 837
Bsc4I	CCNNNNNNNGG	5 cut(s)	482, 580, 668, 860, 861
BseBI	CCWGG	3 cut(s)	273, 483, 838
BseDI	CCNNGG	6 cut(s)	102, 272, 481, 482, 836, 837
BseGI	GGATG	2 cut(s)	301, 570
BseLI	CCNNNNNNNGG	5 cut(s)	482, 580, 668, 860, 861
BseMII	CTCAG	2 cut(s)	552, 684
BseRI	GAGGAG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	2 cut(s)	67, 321
BseYI	CCCAGC	3 cut(s)	29, 538, 899
BsgI	GTGCAG	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	597
BshFI	GGCC	1 cut(s)	121
BslFI	GGGAC	2 cut(s)	12, 290
BslI	CCNNNNNNNGG	5 cut(s)	482, 580, 668, 860, 861
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	2 cut(s)	12, 290
BsmI	GAATGC	2 cut(s)	315, 844
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	569, 701
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	2 cut(s)	553, 685
BspFNI	CGCG	1 cut(s)	597
BspHI	TCATGA	2 cut(s)	82, 643
BspMI	ACCTGC	1 cut(s)	484
BspQI	GCTCTTC	1 cut(s)	432
BsrGI	TGTACA	1 cut(s)	163
BssECI	CCNNGG	6 cut(s)	102, 272, 481, 482, 836, 837
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	3 cut(s)	273, 483, 838
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	432
BstAPI	GCANNNNNTGC	2 cut(s)	61, 548
BstAUI	TGTACA	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	816
BstDEI	CTNAG	2 cut(s)	561, 693
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	301, 570
BstFNI	CGCG	1 cut(s)	597
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 548, 841
BstNI	CCWGG	3 cut(s)	273, 483, 838
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	3 cut(s)	271, 481, 836
BstSFI	CTRYAG	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	569
BstSNI	TACGTA	1 cut(s)	226
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	67, 321
BsuRI	GGCC	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	301, 570
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	816
CaiI	CAGNNNCTG	3 cut(s)	61, 524, 668
CciI	TCATGA	2 cut(s)	82, 643
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	4 cut(s)	164, 223, 227, 377
CviAII	CATG	9 cut(s)	74, 83, 185, 280, 362, 644, 677, 739, 832
CviQI	GTAC	4 cut(s)	164, 223, 227, 377
DdeI	CTNAG	2 cut(s)	561, 693
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco105I	TACGTA	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	701
EcoRII	CCWGG	3 cut(s)	271, 481, 836
EcoT38I	GRGCYC	1 cut(s)	701
FaeI	CATG	9 cut(s)	77, 86, 188, 283, 365, 647, 680, 742, 835
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FaqI	GGGAC	2 cut(s)	12, 290
FatI	CATG	9 cut(s)	73, 82, 184, 279, 361, 643, 676, 738, 831
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	2 cut(s)	56, 335
FokI	GGATG	2 cut(s)	308, 557
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	2 cut(s)	56, 335
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	2 cut(s)	56, 335
GsaI	CCCAGC	3 cut(s)	33, 542, 903
GsuI	CTGGAG	2 cut(s)	645, 672
HaeIII	GGCC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	9 cut(s)	77, 86, 188, 283, 365, 647, 680, 742, 835
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HincII	GTYRAC	2 cut(s)	535, 717
HindII	GTYRAC	2 cut(s)	535, 717
HinfI	GANTC	6 cut(s)	233, 521, 626, 658, 665, 791
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	3 cut(s)	164, 535, 717
Hpy188I	TCNGA	5 cut(s)	244, 469, 505, 526, 562
Hpy188III	TCNNGA	6 cut(s)	83, 306, 644, 662, 761, 874
Hpy8I	GTNNAC	3 cut(s)	164, 535, 717
Hpy99I	CGWCG	2 cut(s)	623, 721
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	7 cut(s)	131, 218, 313, 337, 349, 361, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 548, 841
HpyF3I	CTNAG	2 cut(s)	561, 693
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	9 cut(s)	77, 86, 188, 283, 365, 647, 680, 742, 835
HspAI	GCGC	1 cut(s)	597
Kzo9I	GATC	1 cut(s)	124
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	2 cut(s)	17, 841
Lsp1109I	GCAGC	2 cut(s)	67, 321
LweI	GCATC	2 cut(s)	88, 509
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	436, 449, 733
MhlI	GDGCHC	2 cut(s)	569, 701
MluCI	AATT	4 cut(s)	315, 368, 429, 511
MlyI	GAGTC	3 cut(s)	227, 652, 800
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	7 cut(s)	58, 247, 337, 367, 568, 664, 705
MseI	TTAA	3 cut(s)	173, 329, 800
MslI	CAYNNNNRTG	1 cut(s)	830
MspA1I	CMGCKG	1 cut(s)	692
MspR9I	CCNGG	3 cut(s)	273, 483, 838
Mva1269I	GAATGC	2 cut(s)	315, 844
MvaI	CCWGG	3 cut(s)	273, 483, 838
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	3 cut(s)	61, 548, 841
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	9 cut(s)	77, 86, 188, 283, 365, 647, 680, 742, 835
NspI	RCATGY	1 cut(s)	283
PagI	TCATGA	2 cut(s)	82, 643
PaqCI	CACCTGC	1 cut(s)	484
PasI	CCCWGGG	2 cut(s)	482, 837
PciSI	GCTCTTC	1 cut(s)	432
PctI	GAATGC	2 cut(s)	315, 844
PfeI	GAWTC	3 cut(s)	521, 626, 665
PflFI	GACNNNGTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	2 cut(s)	57, 336
PleI	GAGTC	3 cut(s)	227, 652, 799
PpsI	GAGTC	3 cut(s)	227, 652, 799
Ppu21I	YACGTR	1 cut(s)	226
Psp6I	CCWGG	3 cut(s)	271, 481, 836
PspFI	CCCAGC	3 cut(s)	29, 538, 899
PspGI	CCWGG	3 cut(s)	271, 481, 836
PspPI	GGNCC	1 cut(s)	119
PstNI	CAGNNNCTG	3 cut(s)	61, 524, 668
PsyI	GACNNNGTC	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	4 cut(s)	165, 224, 228, 378
RsaNI	GTAC	4 cut(s)	164, 223, 227, 377
RseI	CAYNNNNRTG	1 cut(s)	830
SalI	GTCGAC	1 cut(s)	715
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	173, 329, 800
SatI	GCNGC	2 cut(s)	56, 335
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	3 cut(s)	227, 652, 800
ScrFI	CCNGG	3 cut(s)	273, 483, 838
SduI	GDGCHC	2 cut(s)	569, 701
SfaNI	GCATC	2 cut(s)	88, 509
SfcI	CTRYAG	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	830
SnaBI	TACGTA	1 cut(s)	226
Sse9I	AATT	4 cut(s)	315, 368, 429, 511
SspI	AATATT	1 cut(s)	786
StyD4I	CCNGG	3 cut(s)	271, 481, 836
TaaI	ACNGT	1 cut(s)	393
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	5 cut(s)	211, 435, 621, 656, 716
TasI	AATT	4 cut(s)	315, 368, 429, 511
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	3 cut(s)	521, 626, 665
Tru1I	TTAA	3 cut(s)	173, 329, 800
Tru9I	TTAA	3 cut(s)	173, 329, 800
TseI	GCWGC	2 cut(s)	55, 334
TspDTI	ATGAA	7 cut(s)	71, 99, 291, 378, 639, 663, 820
TspGWI	ACGGA	2 cut(s)	412, 607
Tth111I	GACNNNGTC	1 cut(s)	8
Van91I	CCANNNNNTGG	1 cut(s)	668
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.