Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004369

Physical Location & Seq

Genomic Coordinates Reverse (-)

99486 .. 103901

Gene Structure 4416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G000700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGACCCCATCAACGGAGGAAACAGTCTCAATAATCCTAACCTTGCCTCAAAACAGCGACTGCGTTGGACACACGAGCTTCATGAACGCTTTGTCGATGCTGTGGCACAACTTGGCGGGCCAGATCGTGCGACACCAAAAGGTGTTTTGAGAGTGATGGGTGTACAAGGTTTAACCATATACCATGTAAAAAGCCATTTACAGAAATATCGACTTGCAAAATACCTACCCGACTCCTCATCTGATGGAAAAAAAGCTGACAAGAAAGAACCTGGGGATGTGCTTTCCAATTTGGATGGTTCATCTGGAATGCAAATTACAGAAGCACTCAAGCTGCAGATGGAGGTGCAGAAGCGACTACACGAGCAATTAGAGGTACAGAGACAGCTGCAGTTACGGATTGAAGCGCAAGGTAAATACTTGAAGAAAATTATAGAAGAGCAACAACGACTTAGTGGAGTTCATTCAGAAGCACCTGGCTCTGGGCACTTAGCTCGTTTGTCAGATGACAATTGCCCAGAATCTGATAACAAGACTGACCCGGCAACCCCTGCCCCAACCTCTGAGTGCCCCCTCGAAGACAAGGCTGCCAAGGAATGTACACCAGCCAAGAGCCTTTCCATTGATGAATCTTTCTCATCTCGTCATGAACCCTTGACTCCAGATTCTGCTTGTCATGTTGATTCTCCAGCCGAGAGTCCAAAAGCAGAGGTGTCGATGAAGAAGCGGCGAGTTATCATGGGCGAAGCATTCACTGATCCAGAAGTGGTGCTTACACACCAGATACTAGAGTCGAGCTTAAACTCTTCATATCAGCAAGCACACACGACTTTCCTGCCTAGGGAGCAGTTTGATCCCTCATCCGGGATTTCATTCAGGAATGAAAAAATATTGGAAAAAGTTGTGGGCAGTGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

307

Amino Acids

33.87

Weight (kDa)

6.14

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01060 AT2G01060
fragaria_vesca	FvH4_3g00070 FvH4_3g00070 FvH4_3g00070
malus_domestica	MD05G1364400.v1.1 MD10G1342100.v1.1
prunus_persica	Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1
pyrus_communis	pycom10g29150
rosa_chinensis	RchiOBHm_Chr5g0000071 RchiOBHm_Chr5g0000091
rosa_laevigata	RLG00000030841
rosa_multiflora	Rmu_ssc0000243.1_g000024
rosa_roxburghii	Rroxscaffold_1G00076000
rosa_rugosa	Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381400
rosa_samantha	Rh5AG000600 Rh5CG000700 Rh5DG000600
rosa_wichuraiana	Rw5G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	117, 727
AclWI	GGATC	2 cut(s)	752, 848
AfaI	GTAC	3 cut(s)	165, 378, 601
AfiI	CCNNNNNNNGG	5 cut(s)	14, 482, 841, 863, 864
AflIII	ACRYGT	1 cut(s)	915
AgsI	TTSAA	2 cut(s)	404, 424
AjnI	CCWGG	2 cut(s)	271, 475
AluBI	AGCT	6 cut(s)	79, 257, 334, 388, 494, 798
AluI	AGCT	6 cut(s)	79, 257, 334, 388, 494, 798
Alw26I	GTCTC	2 cut(s)	32, 376
AlwI	GGATC	2 cut(s)	752, 848
AlwNI	CAGNNNCTG	3 cut(s)	61, 524, 668
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	3 cut(s)	334, 388, 587
AspA2I	CCTAGG	1 cut(s)	839
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	4, 119
AsuC2I	CCSGG	2 cut(s)	542, 865
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	839
BaeGI	GKGCMC	2 cut(s)	489, 572
BaeI	ACNNNNGTAYC	2 cut(s)	776, 809
BauI	CACGAG	2 cut(s)	74, 362
BbsI	GAAGAC	1 cut(s)	585
BbvI	GCAGC	3 cut(s)	321, 375, 574
BccI	CCATC	5 cut(s)	17, 151, 239, 290, 334
BcgI	CGANNNNNNTGC	6 cut(s)	476, 510, 696, 730, 817, 851
BciT130I	CCWGG	2 cut(s)	273, 477
BcnI	CCSGG	2 cut(s)	542, 865
BcoDI	GTCTC	2 cut(s)	32, 376
BfaI	CTAG	2 cut(s)	788, 840
BfmI	CTRYAG	2 cut(s)	335, 389
BisI	GCNGC	4 cut(s)	335, 389, 588, 728
BlnI	CCTAGG	1 cut(s)	839
BlsI	GCNGC	4 cut(s)	336, 390, 589, 729
Bme1390I	CCNGG	4 cut(s)	273, 477, 542, 865
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 119
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	4 cut(s)	273, 477, 542, 865
BmsI	GCATC	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	585
BpmI	CTGGAG	2 cut(s)	645, 672
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	2 cut(s)	542, 865
BsaJI	CCNNGG	3 cut(s)	272, 591, 839
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 482, 841, 863, 864
BseBI	CCWGG	2 cut(s)	273, 477
BseDI	CCNNGG	3 cut(s)	272, 591, 839
BseGI	GGATG	3 cut(s)	283, 301, 860
BseLI	CCNNNNNNNGG	5 cut(s)	14, 482, 841, 863, 864
BseMII	CTCAG	1 cut(s)	555
BseRI	GAGGAG	1 cut(s)	226
BseSI	GKGCMC	2 cut(s)	489, 572
BseXI	GCAGC	3 cut(s)	321, 375, 574
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	542, 864
BslI	CCNNNNNNNGG	5 cut(s)	14, 482, 841, 863, 864
BsmAI	GTCTC	2 cut(s)	32, 376
BsmI	GAATGC	2 cut(s)	315, 749
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	489, 572
Bsp1407I	TGTACA	2 cut(s)	163, 599
Bsp143I	GATC	3 cut(s)	124, 757, 853
BspACI	CCGC	2 cut(s)	117, 727
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	556
BspHI	TCATGA	2 cut(s)	82, 646
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	2 cut(s)	339, 393
BspPI	GGATC	2 cut(s)	752, 848
BspQI	GCTCTTC	1 cut(s)	432
BsrGI	TGTACA	2 cut(s)	163, 599
BssECI	CCNNGG	3 cut(s)	272, 591, 839
BssMI	GATC	3 cut(s)	124, 757, 853
BssSI	CACGAG	2 cut(s)	74, 362
BssT1I	CCWWGG	2 cut(s)	591, 839
Bst2BI	CACGAG	2 cut(s)	74, 362
Bst2UI	CCWGG	2 cut(s)	273, 477
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	2 cut(s)	432, 811
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstAUI	TGTACA	2 cut(s)	163, 599
BstC8I	GCNNGC	2 cut(s)	119, 819
BstDEI	CTNAG	3 cut(s)	452, 490, 564
BstF5I	GGATG	3 cut(s)	283, 301, 860
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	3 cut(s)	127, 760, 856
BstMAI	GTCTC	2 cut(s)	32, 376
BstMBI	GATC	3 cut(s)	124, 757, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 844
BstNI	CCWGG	2 cut(s)	273, 477
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	4 cut(s)	271, 475, 540, 863
BstSFI	CTRYAG	2 cut(s)	335, 389
BstSLI	GKGCMC	2 cut(s)	489, 572
BstV1I	GCAGC	3 cut(s)	321, 375, 574
BstV2I	GAAGAC	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	283, 301, 860
BtsI	GCAGTG	1 cut(s)	916
BtsIMutI	CAGTG	2 cut(s)	753, 916
Cac8I	GCNNGC	2 cut(s)	119, 819
CaiI	CAGNNNCTG	3 cut(s)	61, 524, 668
CciI	TCATGA	2 cut(s)	82, 646
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	2 cut(s)	4, 119
Csp6I	GTAC	3 cut(s)	164, 377, 600
CviAII	CATG	6 cut(s)	83, 185, 647, 677, 739, 916
CviQI	GTAC	3 cut(s)	164, 377, 600
DdeI	CTNAG	3 cut(s)	452, 490, 564
DpnI	GATC	3 cut(s)	126, 759, 855
DpnII	GATC	3 cut(s)	124, 757, 853
Eam1104I	CTCTTC	2 cut(s)	432, 811
EarI	CTCTTC	2 cut(s)	432, 811
Eco130I	CCWWGG	2 cut(s)	591, 839
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	271, 475
EcoT14I	CCWWGG	2 cut(s)	591, 839
ErhI	CCWWGG	2 cut(s)	591, 839
FaeI	CATG	6 cut(s)	86, 188, 650, 680, 742, 919
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FatI	CATG	6 cut(s)	82, 184, 646, 676, 738, 915
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	4 cut(s)	335, 389, 588, 728
FokI	GGATG	3 cut(s)	290, 308, 847
Fsp4HI	GCNGC	4 cut(s)	335, 389, 588, 728
FspBI	CTAG	2 cut(s)	788, 840
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	4 cut(s)	335, 389, 588, 728
GsuI	CTGGAG	2 cut(s)	645, 672
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	2 cut(s)	542, 864
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	6 cut(s)	86, 188, 650, 680, 742, 919
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	8 cut(s)	233, 521, 629, 658, 665, 683, 697, 791
HpaII	CCGG	2 cut(s)	542, 864
Hpy166II	GTNNAC	2 cut(s)	164, 602
Hpy188I	TCNGA	5 cut(s)	244, 469, 505, 526, 565
Hpy188III	TCNNGA	6 cut(s)	83, 306, 647, 662, 761, 877
Hpy8I	GTNNAC	2 cut(s)	164, 602
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	5 cut(s)	218, 313, 337, 349, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 844
HpyF3I	CTNAG	3 cut(s)	452, 490, 564
Hsp92II	CATG	6 cut(s)	86, 188, 650, 680, 742, 919
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	3 cut(s)	124, 757, 853
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	1 cut(s)	844
Lsp1109I	GCAGC	3 cut(s)	321, 375, 574
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	788, 840
MaeIII	GTNAC	2 cut(s)	393, 911
MalI	GATC	3 cut(s)	126, 759, 855
MboI	GATC	3 cut(s)	124, 757, 853
MboII	GAAGA	5 cut(s)	436, 449, 590, 733, 798
MfeI	CAATTG	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	489, 572
MluCI	AATT	5 cut(s)	289, 315, 368, 429, 511
MlyI	GAGTC	4 cut(s)	227, 652, 706, 800
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	9 cut(s)	11, 58, 247, 337, 367, 571, 584, 703, 868
MseI	TTAA	2 cut(s)	173, 800
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	2 cut(s)	542, 864
MspR9I	CCNGG	4 cut(s)	273, 477, 542, 865
MunI	CAATTG	1 cut(s)	511
Mva1269I	GAATGC	2 cut(s)	315, 749
MvaI	CCWGG	2 cut(s)	273, 477
MwoI	GCNNNNNNNGC	2 cut(s)	551, 844
NciI	CCSGG	2 cut(s)	542, 865
NdeII	GATC	3 cut(s)	124, 757, 853
NlaIII	CATG	6 cut(s)	86, 188, 650, 680, 742, 919
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	718
NmuCI	GTSAC	1 cut(s)	911
NspI	RCATGY	1 cut(s)	919
PagI	TCATGA	2 cut(s)	82, 646
PciI	ACATGT	1 cut(s)	915
PciSI	GCTCTTC	1 cut(s)	432
PctI	GAATGC	2 cut(s)	315, 749
PfeI	GAWTC	4 cut(s)	521, 629, 665, 683
PfoI	TCCNGGA	1 cut(s)	863
PkrI	GCNGC	4 cut(s)	336, 390, 589, 729
PleI	GAGTC	4 cut(s)	227, 652, 705, 799
PpsI	GAGTC	4 cut(s)	227, 652, 705, 799
PscI	ACATGT	1 cut(s)	915
Psp6I	CCWGG	2 cut(s)	271, 475
PspGI	CCWGG	2 cut(s)	271, 475
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 119
PstI	CTGCAG	2 cut(s)	339, 393
PstNI	CAGNNNCTG	3 cut(s)	61, 524, 668
PvuII	CAGCTG	1 cut(s)	388
RsaI	GTAC	3 cut(s)	165, 378, 601
RsaNI	GTAC	3 cut(s)	164, 377, 600
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	173, 800
SatI	GCNGC	4 cut(s)	335, 389, 588, 728
Sau3AI	GATC	3 cut(s)	124, 757, 853
Sau96I	GGNCC	2 cut(s)	4, 119
SchI	GAGTC	4 cut(s)	227, 652, 706, 800
ScrFI	CCNGG	4 cut(s)	273, 477, 542, 865
SduI	GDGCHC	2 cut(s)	489, 572
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	2 cut(s)	335, 389
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	5 cut(s)	289, 315, 368, 429, 511
SsiI	CCGC	2 cut(s)	117, 727
SspI	AATATT	1 cut(s)	891
SspMI	CTAG	2 cut(s)	788, 840
StyD4I	CCNGG	4 cut(s)	271, 475, 540, 863
StyI	CCWWGG	2 cut(s)	591, 839
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	5 cut(s)	96, 211, 576, 716, 794
TasI	AATT	5 cut(s)	289, 315, 368, 429, 511
TatI	WGTACW	2 cut(s)	163, 599
TauI	GCSGC	1 cut(s)	730
TfiI	GAWTC	4 cut(s)	521, 629, 665, 683
Tru1I	TTAA	2 cut(s)	173, 800
Tru9I	TTAA	2 cut(s)	173, 800
TscAI	CASTG	2 cut(s)	760, 916
TseFI	GTSAC	1 cut(s)	911
TseI	GCWGC	3 cut(s)	334, 388, 587
Tsp45I	GTSAC	1 cut(s)	911
TspGWI	ACGGA	2 cut(s)	30, 412
TspRI	CASTG	2 cut(s)	760, 916
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	919
XmaJI	CCTAGG	1 cut(s)	839
XspI	CTAG	2 cut(s)	788, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.