Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004369

Physical Location & Seq

Genomic Coordinates Reverse (-)

59851 .. 63914

Gene Structure 4064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00070.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGACAATATCAATGGAGCCAACAGCCCCAGCAACTCTAATCTTACCTCAAAGCAGCGACTGCGTTGGACACATGAGCTTCATGAACGCTTTGTTGATGCCGTTGCACAACTCGGTGGGCCAGATCGTGCAACACCCAAAGGTGTTTTGAGAGTGATGGGTGTACAAGGTTTAACCATATACCATGTAAAGAGCCATTTACAGAAATATCGACTTGCAAAGTATCTACCCGACTCCTCAGCTGATGGGGGAAAAGCTGACAAAAAAGAACCAGGGGACATGCTTTCCAACGTGGATAGTTCCTCTGGAATGCAAATTACGGAAGCATTAAAGCTGCAAATGGAGGTGCAGAAGCGACTGCATGAACAATTAGAGGTACAGAGACAGCTACAATTACGGATAGAAGCACAAGGTAAATACTTGAAGAAAATTATTGAAGAGCAACAACGACTTAGTGGGGTTCTTTCGGAAGGACCTGGCCCTGGGAACACCCTTGCTTCAGGTGACAATTGCCGAGAGTCTGACAAGGTCGACCCAGCAACACCTGCCCCTACCTCTGAGTGCCCCATCCAAGACAAGGCTATCAAGGAACGCGCACCAGCCAAGAGCCTTTCCATCGATGAATCTTGCTCATCTCGTCATGATGAACCGTCGACTCCAGATTCTGGTTGTCATGTTATTTCTCCAGCTGAGAGCCCAGACGCAGAGAGGTCGTTGAAGAAGCAAAAATTTAGCATGGGTGAAGCGTTTTCTAATCCAGAAGTGGTACTTACACATCAAATATTGGAGTCCAGCTTAAACTCTTACCAGCAAGCACACACCCATTTTGTGCCCAGGGAGCAGTCTAATCCCACATCTGATTATTCCATCAGGAATGTTGATTTGGAACAGGTTGCTGGGAGTGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

304

Amino Acids

33.35

Weight (kDa)

5.95

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	20 - 71	1.6e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	101 - 147	4.8e-23	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01060 AT2G01060
fragaria_vesca	FvH4_3g00070 FvH4_3g00070 FvH4_3g00070
malus_domestica	MD05G1364400.v1.1 MD10G1342100.v1.1
prunus_persica	Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1
pyrus_communis	pycom10g29150
rosa_chinensis	RchiOBHm_Chr5g0000071 RchiOBHm_Chr5g0000091
rosa_laevigata	RLG00000030841
rosa_multiflora	Rmu_ssc0000243.1_g000024
rosa_roxburghii	Rroxscaffold_1G00076000
rosa_rugosa	Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381400
rosa_samantha	Rh5AG000600 Rh5CG000700 Rh5DG000600
rosa_wichuraiana	Rw5G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	553
Acc36I	ACCTGC	1 cut(s)	553
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccI	GTMKAC	2 cut(s)	531, 653
AccII	CGCG	1 cut(s)	594
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	3 cut(s)	165, 378, 768
AfiI	CCNNNNNNNGG	3 cut(s)	482, 577, 665
AgsI	TTSAA	3 cut(s)	424, 437, 718
AjnI	CCWGG	4 cut(s)	271, 475, 481, 833
AjuI	GAANNNNNNNTTGG	2 cut(s)	866, 898
AluBI	AGCT	7 cut(s)	79, 242, 257, 334, 388, 689, 795
AluI	AGCT	7 cut(s)	79, 242, 257, 334, 388, 689, 795
Alw26I	GTCTC	1 cut(s)	376
AlwNI	CAGNNNCTG	2 cut(s)	61, 665
AoxI	GGCC	2 cut(s)	119, 478
ApeKI	GCWGC	2 cut(s)	55, 334
ApoI	RAATTY	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	596
AspS9I	GGNCC	3 cut(s)	119, 473, 479
AsuHPI	GGTGA	2 cut(s)	515, 752
AvaII	GGWCC	1 cut(s)	473
BaeGI	GKGCMC	2 cut(s)	566, 834
BanII	GRGCYC	1 cut(s)	698
BbvCI	CCTCAGC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	67, 321
BccI	CCATC	5 cut(s)	151, 239, 575, 623, 875
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	693, 727
BciT130I	CCWGG	4 cut(s)	273, 477, 483, 835
BcoDI	GTCTC	1 cut(s)	376
BfuAI	ACCTGC	1 cut(s)	553
BisI	GCNGC	2 cut(s)	56, 335
BlsI	GCNGC	2 cut(s)	57, 336
Bme1390I	CCNGG	4 cut(s)	273, 477, 483, 835
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	3 cut(s)	119, 473, 479
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	4 cut(s)	273, 477, 483, 835
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	2 cut(s)	642, 669
Bpu10I	CCTNAGC	1 cut(s)	238
Bsa29I	ATCGAT	1 cut(s)	618
BsaJI	CCNNGG	5 cut(s)	272, 481, 482, 833, 834
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 577, 665
BseBI	CCWGG	4 cut(s)	273, 477, 483, 835
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	5 cut(s)	272, 481, 482, 833, 834
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	3 cut(s)	482, 577, 665
BseMII	CTCAG	3 cut(s)	252, 549, 681
BseRI	GAGGAG	1 cut(s)	226
BseSI	GKGCMC	2 cut(s)	566, 834
BseXI	GCAGC	2 cut(s)	67, 321
BseYI	CCCAGC	3 cut(s)	29, 535, 896
BsgI	GTGCAG	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	2 cut(s)	121, 480
BshVI	ATCGAT	1 cut(s)	618
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	3 cut(s)	482, 577, 665
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	121, 480
Bsp1286I	GDGCHC	3 cut(s)	566, 698, 834
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	121, 480
BspCNI	CTCAG	3 cut(s)	251, 550, 682
BspDI	ATCGAT	1 cut(s)	618
BspFNI	CGCG	1 cut(s)	594
BspHI	TCATGA	2 cut(s)	82, 640
BspLI	GGNNCC	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	553
BspQI	GCTCTTC	1 cut(s)	432
BsrGI	TGTACA	1 cut(s)	163
BssECI	CCNNGG	5 cut(s)	272, 481, 482, 833, 834
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	4 cut(s)	273, 477, 483, 835
Bst4CI	ACNGT	1 cut(s)	651
Bst6I	CTCTTC	1 cut(s)	432
BstAPI	GCANNNNNTGC	2 cut(s)	61, 545
BstAUI	TGTACA	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	813
BstDEI	CTNAG	4 cut(s)	238, 452, 558, 690
BstF5I	GGATG	1 cut(s)	567
BstFNI	CGCG	1 cut(s)	594
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 545, 838
BstNI	CCWGG	4 cut(s)	273, 477, 483, 835
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	4 cut(s)	271, 475, 481, 833
BstSLI	GKGCMC	2 cut(s)	566, 834
BstUI	CGCG	1 cut(s)	594
BstV1I	GCAGC	2 cut(s)	67, 321
Bsu15I	ATCGAT	1 cut(s)	618
BsuRI	GGCC	2 cut(s)	121, 480
BsuTUI	ATCGAT	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	567
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	1 cut(s)	813
CaiI	CAGNNNCTG	2 cut(s)	61, 665
CciI	TCATGA	2 cut(s)	82, 640
CfoI	GCGC	1 cut(s)	596
Cfr13I	GGNCC	3 cut(s)	119, 473, 479
ClaI	ATCGAT	1 cut(s)	618
CseI	GACGC	1 cut(s)	710
Csp6I	GTAC	3 cut(s)	164, 377, 767
CviAII	CATG	8 cut(s)	74, 83, 185, 280, 362, 641, 674, 736
CviQI	GTAC	3 cut(s)	164, 377, 767
DdeI	CTNAG	4 cut(s)	238, 452, 558, 690
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	473
EcoRII	CCWGG	4 cut(s)	271, 475, 481, 833
EcoT38I	GRGCYC	1 cut(s)	698
FaeI	CATG	8 cut(s)	77, 86, 188, 283, 365, 644, 677, 739
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	8 cut(s)	73, 82, 184, 279, 361, 640, 673, 735
FblI	GTMKAC	2 cut(s)	531, 653
Fnu4HI	GCNGC	2 cut(s)	56, 335
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	2 cut(s)	56, 335
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	2 cut(s)	56, 335
GsaI	CCCAGC	3 cut(s)	33, 539, 900
GsuI	CTGGAG	2 cut(s)	642, 669
HaeIII	GGCC	2 cut(s)	121, 480
HgaI	GACGC	1 cut(s)	710
HhaI	GCGC	1 cut(s)	596
Hin1II	CATG	8 cut(s)	77, 86, 188, 283, 365, 644, 677, 739
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HincII	GTYRAC	2 cut(s)	532, 654
HindII	GTYRAC	2 cut(s)	532, 654
HinfI	GANTC	6 cut(s)	233, 518, 623, 655, 662, 788
HphI	GGTGA	2 cut(s)	515, 752
Hpy166II	GTNNAC	3 cut(s)	164, 532, 654
Hpy188I	TCNGA	4 cut(s)	469, 523, 559, 859
Hpy188III	TCNNGA	6 cut(s)	83, 306, 641, 659, 758, 871
Hpy8I	GTNNAC	3 cut(s)	164, 532, 654
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	1 cut(s)	651
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	7 cut(s)	107, 131, 218, 313, 337, 349, 361
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 545, 838
HpyF3I	CTNAG	4 cut(s)	238, 452, 558, 690
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	8 cut(s)	77, 86, 188, 283, 365, 644, 677, 739
HspAI	GCGC	1 cut(s)	594
Kzo9I	GATC	1 cut(s)	124
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	2 cut(s)	17, 838
Lsp1109I	GCAGC	2 cut(s)	67, 321
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	436, 449, 730
MfeI	CAATTG	1 cut(s)	508
MhlI	GDGCHC	3 cut(s)	566, 698, 834
MluCI	AATT	6 cut(s)	315, 368, 392, 429, 508, 728
MlyI	GAGTC	4 cut(s)	227, 527, 649, 797
MmeI	TCCRAC	2 cut(s)	47, 312
MnlI	CCTC	7 cut(s)	58, 247, 313, 337, 367, 565, 702
MseI	TTAA	3 cut(s)	173, 329, 797
MspA1I	CMGCKG	2 cut(s)	242, 689
MspR9I	CCNGG	4 cut(s)	273, 477, 483, 835
MunI	CAATTG	1 cut(s)	508
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	4 cut(s)	273, 477, 483, 835
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	3 cut(s)	61, 545, 838
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	8 cut(s)	77, 86, 188, 283, 365, 644, 677, 739
NlaIV	GGNNCC	1 cut(s)	19
NmeAIII	GCCGAG	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	503
NspI	RCATGY	1 cut(s)	283
PagI	TCATGA	2 cut(s)	82, 640
PaqCI	CACCTGC	1 cut(s)	553
PasI	CCCWGGG	2 cut(s)	482, 834
PciSI	GCTCTTC	1 cut(s)	432
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	623, 662
PflFI	GACNNNGTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	665
PkrI	GCNGC	2 cut(s)	57, 336
PleI	GAGTC	4 cut(s)	227, 526, 649, 796
PpsI	GAGTC	4 cut(s)	227, 526, 649, 796
PpuMI	RGGWCCY	1 cut(s)	473
Psp5II	RGGWCCY	1 cut(s)	473
Psp6I	CCWGG	4 cut(s)	271, 475, 481, 833
PspFI	CCCAGC	3 cut(s)	29, 535, 896
PspGI	CCWGG	4 cut(s)	271, 475, 481, 833
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	3 cut(s)	119, 473, 479
PspPPI	RGGWCCY	1 cut(s)	473
PstNI	CAGNNNCTG	2 cut(s)	61, 665
PsyI	GACNNNGTC	1 cut(s)	527
PvuII	CAGCTG	2 cut(s)	242, 689
RsaI	GTAC	3 cut(s)	165, 378, 768
RsaNI	GTAC	3 cut(s)	164, 377, 767
SalI	GTCGAC	2 cut(s)	530, 652
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	173, 329, 797
SatI	GCNGC	2 cut(s)	56, 335
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	3 cut(s)	119, 473, 479
SchI	GAGTC	4 cut(s)	227, 527, 649, 797
ScrFI	CCNGG	4 cut(s)	273, 477, 483, 835
SduI	GDGCHC	3 cut(s)	566, 698, 834
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	473
Sse9I	AATT	6 cut(s)	315, 368, 392, 429, 508, 728
SspI	AATATT	1 cut(s)	783
StyD4I	CCNGG	4 cut(s)	271, 475, 481, 833
TaaI	ACNGT	1 cut(s)	651
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	4 cut(s)	211, 531, 618, 653
TasI	AATT	6 cut(s)	315, 368, 392, 429, 508, 728
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	2 cut(s)	623, 662
Tru1I	TTAA	3 cut(s)	173, 329, 797
Tru9I	TTAA	3 cut(s)	173, 329, 797
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	2 cut(s)	55, 334
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	5 cut(s)	71, 99, 378, 636, 660
TspGWI	ACGGA	2 cut(s)	335, 412
Tth111I	GACNNNGTC	1 cut(s)	527
Van91I	CCANNNNNTGG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	2 cut(s)	531, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.