Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004369

Physical Location & Seq

Genomic Coordinates Reverse (-)

142255 .. 145042

Gene Structure 2788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030841

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGACAATGTCAATGGAGCGAAAAGTCCCAGCAACTCTAATCTTGCCTCAAAGCAGCGACTGCGTTGGACGCATGAGCTTCATGAACGCTTTGTTGATGCCGTGGCACAACTCGGTGGGCCAGATCGTGCAACACCCAAAGGTGTTTTGAGAGTGATGGGTGTACAAGGTTTAACCATATACCATGTAAAGAGCCATTTACAGAAATATCGACTTGCAAAGTACCTACCCGACTCCTCATCTGATGGGGGAAAAGCTGACAAGAAAGAACCAGGGGACATGCTTTCCAATGTGGATGGTTCATCTGGAATGCAAATTACGGAAGCATTAAAGCTGCAAATGGAGGTGCAGAAGCGACTGCATGAACAATTAGAGGTACAGAGACAGCTACAGTTACGGATAGAAGCACAAGGTAAATACTTGAAGAAAATTATCGAAGAGCAACAACGACTTAGTGGAGTTCTTTCAGAAGCACCTGGCCCTGGGAACTCCACCCGTGCATCAGATGATAATTGCCCAGAATCTGACAAGGTTGACCCAGCAACCCCTGCCCCAACCTCTGAGTGCCCCATCCAAGACAAGGCTATCAAGGAACGTGCACCAGCCAAGAGCCTTTCCATTGATGAATCTTTCTCATCTCGTCATGATGAACCCTCGACTCCAGATTCTGGTTGTCATGTTATTTCTCCAGCTGAGAGCCCAAAAGCAGAGAGGTCGACGAAGAAGCAAAGGTTTAGCATGGGTGAAGCATTTTCTAATCCAGAAGTGGTGCTTACACATCAAATATTGGAGTCCAGCTTAAACTCTTACCAGCAAGCACACACCATTTTCATGCCCAGGGAGCATTCTAATCCCACATCTGGGATTTCTGTCAGGAATGTTGATTTGGAACAAGTTGCTGGGGGTGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

305

Amino Acids

33.39

Weight (kDa)

6.38

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	20 - 71	1.6e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	104 - 150	4.9e-23	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01060 AT2G01060
fragaria_vesca	FvH4_3g00070 FvH4_3g00070 FvH4_3g00070
malus_domestica	MD05G1364400.v1.1 MD10G1342100.v1.1
prunus_persica	Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1
pyrus_communis	pycom10g29150
rosa_chinensis	RchiOBHm_Chr5g0000071 RchiOBHm_Chr5g0000091
rosa_laevigata	RLG00000030841
rosa_multiflora	Rmu_ssc0000243.1_g000024
rosa_roxburghii	Rroxscaffold_1G00076000
rosa_rugosa	Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381400
rosa_samantha	Rh5AG000600 Rh5CG000700 Rh5DG000600
rosa_wichuraiana	Rw5G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	716
AfaI	GTAC	3 cut(s)	165, 224, 378
AfiI	CCNNNNNNNGG	5 cut(s)	482, 580, 668, 860, 861
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	4 cut(s)	271, 475, 481, 836
AjuI	GAANNNNNNNTTGG	2 cut(s)	869, 901
AluBI	AGCT	6 cut(s)	79, 257, 334, 388, 692, 798
AluI	AGCT	6 cut(s)	79, 257, 334, 388, 692, 798
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	1 cut(s)	376
Alw44I	GTGCAC	1 cut(s)	597
AlwNI	CAGNNNCTG	3 cut(s)	61, 524, 668
AoxI	GGCC	2 cut(s)	119, 478
ApaLI	GTGCAC	1 cut(s)	597
ApeKI	GCWGC	2 cut(s)	55, 334
AspS9I	GGNCC	2 cut(s)	119, 479
AsuHPI	GGTGA	1 cut(s)	755
BaeGI	GKGCMC	2 cut(s)	569, 601
BanII	GRGCYC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	2 cut(s)	67, 321
BccI	CCATC	4 cut(s)	151, 239, 290, 578
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	696, 730
BciT130I	CCWGG	4 cut(s)	273, 477, 483, 838
BcoDI	GTCTC	1 cut(s)	376
BfmI	CTRYAG	1 cut(s)	389
BisI	GCNGC	2 cut(s)	56, 335
BlsI	GCNGC	2 cut(s)	57, 336
Bme1390I	CCNGG	4 cut(s)	273, 477, 483, 838
BmgT120I	GGNCC	2 cut(s)	119, 479
BmrFI	CCNGG	4 cut(s)	273, 477, 483, 838
BmsI	GCATC	2 cut(s)	88, 509
BpmI	CTGGAG	2 cut(s)	645, 672
BsaJI	CCNNGG	6 cut(s)	102, 272, 481, 482, 836, 837
Bsc4I	CCNNNNNNNGG	5 cut(s)	482, 580, 668, 860, 861
BseBI	CCWGG	4 cut(s)	273, 477, 483, 838
BseDI	CCNNGG	6 cut(s)	102, 272, 481, 482, 836, 837
BseGI	GGATG	2 cut(s)	301, 570
BseLI	CCNNNNNNNGG	5 cut(s)	482, 580, 668, 860, 861
BseMII	CTCAG	2 cut(s)	552, 684
BseRI	GAGGAG	1 cut(s)	226
BseSI	GKGCMC	2 cut(s)	569, 601
BseXI	GCAGC	2 cut(s)	67, 321
BseYI	CCCAGC	3 cut(s)	29, 538, 899
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	2 cut(s)	121, 480
BsiHKAI	GWGCWC	1 cut(s)	601
BslFI	GGGAC	2 cut(s)	12, 290
BslI	CCNNNNNNNGG	5 cut(s)	482, 580, 668, 860, 861
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	2 cut(s)	12, 290
BsmI	GAATGC	2 cut(s)	315, 844
BsnI	GGCC	2 cut(s)	121, 480
Bsp1286I	GDGCHC	3 cut(s)	569, 601, 701
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	121, 480
BspCNI	CTCAG	2 cut(s)	553, 685
BspHI	TCATGA	2 cut(s)	82, 643
BspQI	GCTCTTC	1 cut(s)	432
BsrGI	TGTACA	1 cut(s)	163
BssECI	CCNNGG	6 cut(s)	102, 272, 481, 482, 836, 837
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	4 cut(s)	273, 477, 483, 838
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	432
BstAPI	GCANNNNNTGC	2 cut(s)	61, 548
BstAUI	TGTACA	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	816
BstDEI	CTNAG	3 cut(s)	452, 561, 693
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	301, 570
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 70, 548, 841
BstNI	CCWGG	4 cut(s)	273, 477, 483, 838
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	4 cut(s)	271, 475, 481, 836
BstSFI	CTRYAG	1 cut(s)	389
BstSLI	GKGCMC	2 cut(s)	569, 601
BstV1I	GCAGC	2 cut(s)	67, 321
BsuRI	GGCC	2 cut(s)	121, 480
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	301, 570
Cac8I	GCNNGC	1 cut(s)	816
CaiI	CAGNNNCTG	3 cut(s)	61, 524, 668
CciI	TCATGA	2 cut(s)	82, 643
Cfr13I	GGNCC	2 cut(s)	119, 479
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	3 cut(s)	164, 223, 377
CviAII	CATG	9 cut(s)	74, 83, 185, 280, 362, 644, 677, 739, 832
CviQI	GTAC	3 cut(s)	164, 223, 377
DdeI	CTNAG	3 cut(s)	452, 561, 693
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	701
EcoRII	CCWGG	4 cut(s)	271, 475, 481, 836
EcoT38I	GRGCYC	1 cut(s)	701
FaeI	CATG	9 cut(s)	77, 86, 188, 283, 365, 647, 680, 742, 835
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FaqI	GGGAC	2 cut(s)	12, 290
FatI	CATG	9 cut(s)	73, 82, 184, 279, 361, 643, 676, 738, 831
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	2 cut(s)	56, 335
FokI	GGATG	2 cut(s)	308, 557
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	2 cut(s)	56, 335
GluI	GCNGC	2 cut(s)	56, 335
GsaI	CCCAGC	3 cut(s)	33, 542, 903
GsuI	CTGGAG	2 cut(s)	645, 672
HaeIII	GGCC	2 cut(s)	121, 480
HgaI	GACGC	1 cut(s)	79
Hin1II	CATG	9 cut(s)	77, 86, 188, 283, 365, 647, 680, 742, 835
HincII	GTYRAC	2 cut(s)	535, 717
HindII	GTYRAC	2 cut(s)	535, 717
HinfI	GANTC	6 cut(s)	233, 521, 626, 658, 665, 791
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	4 cut(s)	164, 535, 599, 717
Hpy188I	TCNGA	5 cut(s)	244, 469, 505, 526, 562
Hpy188III	TCNNGA	6 cut(s)	83, 306, 644, 662, 761, 874
Hpy8I	GTNNAC	4 cut(s)	164, 535, 599, 717
Hpy99I	CGWCG	1 cut(s)	721
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	8 cut(s)	131, 218, 313, 337, 349, 361, 500, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 70, 548, 841
HpyF3I	CTNAG	3 cut(s)	452, 561, 693
HpySE526I	ACGT	1 cut(s)	595
Hsp92II	CATG	9 cut(s)	77, 86, 188, 283, 365, 647, 680, 742, 835
Kzo9I	GATC	1 cut(s)	124
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	2 cut(s)	17, 841
Lsp1109I	GCAGC	2 cut(s)	67, 321
LweI	GCATC	2 cut(s)	88, 509
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	436, 449, 733
MhlI	GDGCHC	3 cut(s)	569, 601, 701
MluCI	AATT	4 cut(s)	315, 368, 429, 511
MlyI	GAGTC	3 cut(s)	227, 652, 800
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	7 cut(s)	58, 247, 337, 367, 568, 664, 705
MseI	TTAA	3 cut(s)	173, 329, 800
MslI	CAYNNNNRTG	1 cut(s)	830
MspA1I	CMGCKG	1 cut(s)	692
MspR9I	CCNGG	4 cut(s)	273, 477, 483, 838
Mva1269I	GAATGC	2 cut(s)	315, 844
MvaI	CCWGG	4 cut(s)	273, 477, 483, 838
MwoI	GCNNNNNNNGC	4 cut(s)	61, 70, 548, 841
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	9 cut(s)	77, 86, 188, 283, 365, 647, 680, 742, 835
NspI	RCATGY	1 cut(s)	283
PagI	TCATGA	2 cut(s)	82, 643
PasI	CCCWGGG	2 cut(s)	482, 837
PciSI	GCTCTTC	1 cut(s)	432
PctI	GAATGC	2 cut(s)	315, 844
PfeI	GAWTC	3 cut(s)	521, 626, 665
PflFI	GACNNNGTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	2 cut(s)	57, 336
PleI	GAGTC	3 cut(s)	227, 652, 799
PpsI	GAGTC	3 cut(s)	227, 652, 799
Psp6I	CCWGG	4 cut(s)	271, 475, 481, 836
PspFI	CCCAGC	3 cut(s)	29, 538, 899
PspGI	CCWGG	4 cut(s)	271, 475, 481, 836
PspPI	GGNCC	2 cut(s)	119, 479
PstNI	CAGNNNCTG	3 cut(s)	61, 524, 668
PsyI	GACNNNGTC	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	3 cut(s)	165, 224, 378
RsaNI	GTAC	3 cut(s)	164, 223, 377
RseI	CAYNNNNRTG	1 cut(s)	830
SalI	GTCGAC	1 cut(s)	715
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	173, 329, 800
SatI	GCNGC	2 cut(s)	56, 335
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	2 cut(s)	119, 479
SchI	GAGTC	3 cut(s)	227, 652, 800
ScrFI	CCNGG	4 cut(s)	273, 477, 483, 838
SduI	GDGCHC	3 cut(s)	569, 601, 701
SfaNI	GCATC	2 cut(s)	88, 509
SfcI	CTRYAG	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	830
Sse9I	AATT	4 cut(s)	315, 368, 429, 511
SspI	AATATT	1 cut(s)	786
StyD4I	CCNGG	4 cut(s)	271, 475, 481, 836
TaaI	ACNGT	1 cut(s)	393
TaiI	ACGT	1 cut(s)	598
TaqI	TCGA	4 cut(s)	211, 435, 656, 716
TasI	AATT	4 cut(s)	315, 368, 429, 511
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	3 cut(s)	521, 626, 665
Tru1I	TTAA	3 cut(s)	173, 329, 800
Tru9I	TTAA	3 cut(s)	173, 329, 800
TseI	GCWGC	2 cut(s)	55, 334
TspDTI	ATGAA	7 cut(s)	71, 99, 291, 378, 639, 663, 820
TspGWI	ACGGA	2 cut(s)	335, 412
Tth111I	GACNNNGTC	1 cut(s)	8
Van91I	CCANNNNNTGG	1 cut(s)	668
VneI	GTGCAC	1 cut(s)	597
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.