Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004369

Physical Location & Seq

Genomic Coordinates Forward (+)

55157853 .. 55162178

Gene Structure 4326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0381300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGTGTATTTGATATCATCAATCTGCAATCTAGGGTTTCTTGACACACTTAGCGAAACCTCCTTCCCATCCTCTGCACCGCCACTGAAACCCTCCTCAACGACGCCGGAGACCTCTCGGTGGGCCCGCAACTCGTATCTCTCTCTCTCTCTGTGGACTGTGTACAGGTCATTGAAGGATCTTTTGGGTGATGGGGAAGATTGTGTGGGGACGTTTGTGCAAGTTACGGTTTTGGAGATTTATAATGAGGAGATTTATGATGTGTTGTCTAGTTATGGTGGGTTTCGATGGCCTAGAGGGAATGGCTCCAATTCTAAGCTAGTTTTTTTCTTCTACCAGATCACTGATTTGCCATTTTCTCTCTACTCCACATTTGTGGTTGAGGCACGTCATAGTTTCAATAAGCAAATGATATGGTTATTCTTCAGAGATATGTTGAAAGGAATTTGCCTTATGGCTATTCTTGGTCCACCAATTGTGTCTGCAATTATTGTGATTGTGCAGCACACCATAATACCTGTCCAGCACCTAGTTAGCTTTGCTCTTAACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

184

Amino Acids

20.85

Weight (kDa)

5.86

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	108 - 170	1.3e-20	CAAX prenyl protease N-terminal, five membrane helices

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01060 AT2G01060
fragaria_vesca	FvH4_3g00070 FvH4_3g00070 FvH4_3g00070
malus_domestica	MD05G1364400.v1.1 MD10G1342100.v1.1
prunus_persica	Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1
pyrus_communis	pycom10g29150
rosa_chinensis	RchiOBHm_Chr5g0000071 RchiOBHm_Chr5g0000091
rosa_laevigata	RLG00000030841
rosa_multiflora	Rmu_ssc0000243.1_g000024
rosa_roxburghii	Rroxscaffold_1G00076000
rosa_rugosa	Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381400
rosa_samantha	Rh5AG000600 Rh5CG000700 Rh5DG000600
rosa_wichuraiana	Rw5G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AciI	CCGC	2 cut(s)	80, 127
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	444
AcuI	CTGAAG	1 cut(s)	409
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	175, 400, 439
AjiI	CACGTC	1 cut(s)	389
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	2 cut(s)	319, 537
AluI	AGCT	2 cut(s)	319, 537
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	2 cut(s)	123, 290
ApaI	GGGCCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	1 cut(s)	444
AspS9I	GGNCC	3 cut(s)	123, 124, 467
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	3 cut(s)	76, 185, 282
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	5 cut(s)	32, 270, 294, 320, 530
BisI	GCNGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	504
Bme18I	GGWCC	1 cut(s)	467
BmgBI	CACGTC	1 cut(s)	389
BmgT120I	GGNCC	3 cut(s)	123, 124, 467
BmiI	GGNNCC	2 cut(s)	125, 307
BsaHI	GRCGYC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	554
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	2 cut(s)	85, 263
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	514
BsgI	GTGCAG	2 cut(s)	60, 521
BshFI	GGCC	2 cut(s)	125, 292
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	125, 292
Bso31I	GGTCTC	1 cut(s)	104
Bsp120I	GGGCCC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	178, 339
BspACI	CCGC	2 cut(s)	80, 127
BspANI	GGCC	2 cut(s)	125, 292
BspLI	GGNNCC	2 cut(s)	125, 307
BspPI	GGATC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	554
BssMI	GATC	2 cut(s)	178, 339
BssNI	GRCGYC	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	160, 229
BstACI	GRCGYC	1 cut(s)	104
BstAUI	TGTACA	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	50, 315
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	181, 342
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	178, 339
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	514
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	125, 292
BtrI	CACGTC	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	83, 342
Cac8I	GCNNGC	1 cut(s)	127
Cfr13I	GGNCC	3 cut(s)	123, 124, 467
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	163
CviJI	RGCY	6 cut(s)	125, 292, 306, 319, 458, 537
CviKI_1	RGCY	6 cut(s)	125, 292, 306, 319, 458, 537
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	2 cut(s)	50, 315
DpnI	GATC	2 cut(s)	180, 341
DpnII	GATC	2 cut(s)	178, 339
Eco24I	GRGCYC	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	409
EcoRV	GATATC	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	127
FaiI	YATR	8 cut(s)	243, 258, 276, 393, 415, 434, 455, 512
FaqI	GGGAC	1 cut(s)	223
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	503
FspBI	CTAG	5 cut(s)	32, 270, 294, 320, 530
GluI	GCNGC	1 cut(s)	503
HaeIII	GGCC	2 cut(s)	125, 292
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	104
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	3 cut(s)	156, 163, 470
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	3 cut(s)	156, 163, 470
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	2 cut(s)	73, 169
HpyCH4III	ACNGT	2 cut(s)	160, 229
HpyCH4IV	ACGT	2 cut(s)	212, 388
HpyCH4V	TGCA	5 cut(s)	27, 77, 220, 485, 502
HpyF3I	CTNAG	2 cut(s)	50, 315
HpySE526I	ACGT	2 cut(s)	212, 388
Hsp92I	GRCGYC	1 cut(s)	104
Kzo9I	GATC	2 cut(s)	178, 339
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	6 cut(s)	120, 151, 350, 531, 535, 536
Lsp1109I	GCAGC	1 cut(s)	514
MaeI	CTAG	5 cut(s)	32, 270, 294, 320, 530
MaeII	ACGT	2 cut(s)	212, 388
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	180, 341
MboI	GATC	2 cut(s)	178, 339
MboII	GAAGA	3 cut(s)	209, 322, 415
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	4 cut(s)	310, 444, 474, 486
MnlI	CCTC	8 cut(s)	70, 82, 103, 106, 124, 241, 290, 376
MseI	TTAA	1 cut(s)	546
MslI	CAYNNNNRTG	1 cut(s)	374
MspI	CCGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	474
NdeII	GATC	2 cut(s)	178, 339
NlaIV	GGNNCC	2 cut(s)	125, 307
OliI	CACNNNNGTG	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	504
PsiI	TTATAA	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	125, 307
PspOMI	GGGCCC	1 cut(s)	123
PspPI	GGNCC	3 cut(s)	123, 124, 467
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	2 cut(s)	178, 339
Sau96I	GGNCC	3 cut(s)	123, 124, 467
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	9 cut(s)	62, 116, 170, 215, 321, 391, 520, 531, 539
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	374
Sse9I	AATT	4 cut(s)	310, 444, 474, 486
SsiI	CCGC	2 cut(s)	80, 127
SspMI	CTAG	5 cut(s)	32, 270, 294, 320, 530
TaaI	ACNGT	2 cut(s)	160, 229
TaiI	ACGT	2 cut(s)	215, 391
TaqI	TCGA	1 cut(s)	286
TasI	AATT	4 cut(s)	310, 444, 474, 486
TatI	WGTACW	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	2 cut(s)	90, 349
TseI	GCWGC	1 cut(s)	502
TspRI	CASTG	2 cut(s)	90, 349
VpaK11BI	GGWCC	1 cut(s)	467
XapI	RAATTY	1 cut(s)	444
XspI	CTAG	5 cut(s)	32, 270, 294, 320, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.