Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004369

Physical Location & Seq

Genomic Coordinates Reverse (-)

83999 .. 85394

Gene Structure 1396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28164

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGGAAAAAAAAATTGAGATTTTGCATATTCTTGCCTTATTCTTTGTGTGCTACAAAGCCTCATATTACTTTGAATCTTCAGCTTCATGTACAGAGACAGCTACAGTTACGGATAGAAGCACAAGGTAAATACTTGAAGAAAATTATCGAAGAGCAACAACGACTTAGTGGAGTTCTTTCAGAAGCACCTGGCCCTGGGAACTCCACCCGTGCATCAGATGATAATTGCCCAGAATCTGACAAGGTTGACCCAGCAACCCCTGCCCCGACCTCTGAGTGCCCCATCCAAGACAAGGCTATCAAGGAACGCGCACCAGCCAAGAGCCTTTCCGTCGATGAATCTTGCTCATCTCGTCATGATGAACCCTCAACTCCAGATTCTGGTTGTCATGTTATTTCTCCAGCTGAGAGCCCAAAAGCAGAGAGGTTGACGAAGAAGCAAAGGTTTAGCATGGGTGAAGCATTTTCTAATCCAGAAGTGGTGCTTACACATCAAATATTGGAGTCCAGCTTAAACTCTTACCAGCAAGCACACACCATTTTCATGCCCAGGGAGCATTCTAATCCCACATCTGGGATTTCTGTCAGGAATGTTGATTTGGAACAAGTTGCTGGGAGTGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

209

Amino Acids

23.05

Weight (kDa)

6.66

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	24 - 55	2.1e-10	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01060 AT2G01060
fragaria_vesca	FvH4_3g00070 FvH4_3g00070 FvH4_3g00070
malus_domestica	MD05G1364400.v1.1 MD10G1342100.v1.1
prunus_persica	Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1
pyrus_communis	pycom10g29150
rosa_chinensis	RchiOBHm_Chr5g0000071 RchiOBHm_Chr5g0000091
rosa_laevigata	RLG00000030841
rosa_multiflora	Rmu_ssc0000243.1_g000024
rosa_roxburghii	Rroxscaffold_1G00076000
rosa_rugosa	Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381400
rosa_samantha	Rh5AG000600 Rh5CG000700 Rh5DG000600
rosa_wichuraiana	Rw5G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	383
AccII	CGCG	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	5 cut(s)	197, 295, 383, 575, 576
AgsI	TTSAA	2 cut(s)	76, 139
AjnI	CCWGG	3 cut(s)	190, 196, 551
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AluBI	AGCT	4 cut(s)	85, 103, 407, 513
AluI	AGCT	4 cut(s)	85, 103, 407, 513
Alw26I	GTCTC	1 cut(s)	91
AlwNI	CAGNNNCTG	2 cut(s)	239, 383
AoxI	GGCC	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	416
BccI	CCATC	1 cut(s)	293
BciT130I	CCWGG	3 cut(s)	192, 198, 553
BcoDI	GTCTC	1 cut(s)	91
BfmI	CTRYAG	1 cut(s)	104
Bme1390I	CCNGG	3 cut(s)	192, 198, 553
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	3 cut(s)	192, 198, 553
BmsI	GCATC	1 cut(s)	224
BpmI	CTGGAG	2 cut(s)	360, 387
BsaJI	CCNNGG	4 cut(s)	196, 197, 551, 552
Bsc4I	CCNNNNNNNGG	5 cut(s)	197, 295, 383, 575, 576
BseBI	CCWGG	3 cut(s)	192, 198, 553
BseDI	CCNNGG	4 cut(s)	196, 197, 551, 552
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	5 cut(s)	197, 295, 383, 575, 576
BseMII	CTCAG	2 cut(s)	267, 399
BseSI	GKGCMC	1 cut(s)	284
BseYI	CCCAGC	2 cut(s)	253, 614
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	195
BslI	CCNNNNNNNGG	5 cut(s)	197, 295, 383, 575, 576
BsmAI	GTCTC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	284, 416
Bsp1407I	TGTACA	1 cut(s)	91
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	268, 400
BspFNI	CGCG	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	358
BspQI	GCTCTTC	1 cut(s)	147
BsrGI	TGTACA	1 cut(s)	91
BssECI	CCNNGG	4 cut(s)	196, 197, 551, 552
Bst2UI	CCWGG	3 cut(s)	192, 198, 553
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	3 cut(s)	167, 276, 408
BstF5I	GGATG	1 cut(s)	285
BstFNI	CGCG	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	314
BstMAI	GTCTC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 556
BstNI	CCWGG	3 cut(s)	192, 198, 553
BstSCI	CCNGG	3 cut(s)	190, 196, 551
BstSFI	CTRYAG	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	284
BstUI	CGCG	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	531
CaiI	CAGNNNCTG	2 cut(s)	239, 383
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	5 cut(s)	89, 359, 392, 454, 547
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	3 cut(s)	167, 276, 408
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	65
EcoRII	CCWGG	3 cut(s)	190, 196, 551
EcoT38I	GRGCYC	1 cut(s)	416
FaeI	CATG	5 cut(s)	92, 362, 395, 457, 550
FaiI	YATR	8 cut(s)	29, 66, 90, 360, 393, 455, 548, 626
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FatI	CATG	5 cut(s)	88, 358, 391, 453, 546
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	416
GlaI	GCGC	1 cut(s)	313
GsaI	CCCAGC	2 cut(s)	257, 618
GsuI	CTGGAG	2 cut(s)	360, 387
HaeIII	GGCC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	314
Hin1II	CATG	5 cut(s)	92, 362, 395, 457, 550
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HincII	GTYRAC	2 cut(s)	250, 432
HindII	GTYRAC	2 cut(s)	250, 432
HinfI	GANTC	5 cut(s)	76, 236, 341, 380, 506
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	250, 432
Hpy188I	TCNGA	4 cut(s)	184, 220, 241, 277
Hpy188III	TCNNGA	4 cut(s)	359, 377, 476, 589
Hpy8I	GTNNAC	2 cut(s)	250, 432
Hpy99I	CGWCG	1 cut(s)	338
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	2 cut(s)	27, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 556
HpyF3I	CTNAG	3 cut(s)	167, 276, 408
Hsp92II	CATG	5 cut(s)	92, 362, 395, 457, 550
HspAI	GCGC	1 cut(s)	312
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	556
LweI	GCATC	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	108
MboII	GAAGA	4 cut(s)	71, 151, 164, 448
MhlI	GDGCHC	2 cut(s)	284, 416
MluCI	AATT	3 cut(s)	14, 144, 226
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	4 cut(s)	72, 283, 379, 420
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	1 cut(s)	545
MspA1I	CMGCKG	1 cut(s)	407
MspR9I	CCNGG	3 cut(s)	192, 198, 553
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	3 cut(s)	192, 198, 553
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	263, 556
NlaIII	CATG	5 cut(s)	92, 362, 395, 457, 550
PagI	TCATGA	1 cut(s)	358
PasI	CCCWGGG	2 cut(s)	197, 552
PciSI	GCTCTTC	1 cut(s)	147
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	4 cut(s)	76, 236, 341, 380
PflMI	CCANNNNNTGG	1 cut(s)	383
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Psp6I	CCWGG	3 cut(s)	190, 196, 551
PspFI	CCCAGC	2 cut(s)	253, 614
PspGI	CCWGG	3 cut(s)	190, 196, 551
PspPI	GGNCC	1 cut(s)	194
PstNI	CAGNNNCTG	2 cut(s)	239, 383
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	545
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	515
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	3 cut(s)	192, 198, 553
SduI	GDGCHC	2 cut(s)	284, 416
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	545
Sse9I	AATT	3 cut(s)	14, 144, 226
SspI	AATATT	1 cut(s)	501
StyD4I	CCNGG	3 cut(s)	190, 196, 551
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	150, 336
TasI	AATT	3 cut(s)	14, 144, 226
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	4 cut(s)	76, 236, 341, 380
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TspDTI	ATGAA	4 cut(s)	77, 354, 378, 535
TspGWI	ACGGA	2 cut(s)	127, 322
Van91I	CCANNNNNTGG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.