Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004369

Physical Location & Seq

Genomic Coordinates Reverse (-)

85712 .. 88176

Gene Structure 2465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTATCAACCAAACGGTGCTCCTAGTTCAGGCTTAATCCAGAATAATTTGTTAGTCCATGGTCAATATTTAGACTGTGGCACCAATACAATGGACAATGTCAATGGAGCGAAAAGTCCCAGCAACTCTAATCTTGCCTCAAAGCAGCGACTGCGTTGGACACATGAGCTTCATGAACGCTTTGTTGATGCCGTGGCGCAACTCGGTGGGCCAGATCGTGCAACACCCAAAGGTGTTTTGAGAGTGATGGGTGTACAAGGTTTAACCATATACCATGTAAAGAGCCATTTACAGAAATATCGACTTGCAAAGTACCTACCCGACTCCTCATCTGATGGGGGAAAAGCTGACAAGAAAGAACCAGGAGACATGCTTTCCAATGTGGATGGTTCATCTGGAATGCAAATTACGGAAGCATTAAAGCTGCAAATGGAGGTGCAGAAGCGACTGCATGAACAATTAGAGGCATGCTTTCTCTACAAATTTAGCTTTCAGTTAATTAGTATACTGTGTCAAGAATTAATTACAATTTACTGCCCTGTGTTCATACTTGTATTTTCGATTTTGACAAACTACCAATGGACTTACCAATTTCATGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

201

Amino Acids

22.57

Weight (kDa)

8.3

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	50 - 101	7.9e-10	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	134 - 155	2e-09	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01060 AT2G01060
fragaria_vesca	FvH4_3g00070 FvH4_3g00070 FvH4_3g00070
malus_domestica	MD05G1364400.v1.1 MD10G1342100.v1.1
prunus_persica	Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1 Prupe.4G000700_v2.0.a1
pyrus_communis	pycom10g29150
rosa_chinensis	RchiOBHm_Chr5g0000071 RchiOBHm_Chr5g0000091
rosa_laevigata	RLG00000030841
rosa_multiflora	Rmu_ssc0000243.1_g000024
rosa_roxburghii	Rroxscaffold_1G00076000
rosa_rugosa	Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381300 Rorug04G0381400
rosa_samantha	Rh5AG000600 Rh5CG000700 Rh5DG000600
rosa_wichuraiana	Rw5G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	482
AfaI	GTAC	2 cut(s)	255, 314
AfiI	CCNNNNNNNGG	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	4 cut(s)	169, 347, 424, 489
AluI	AGCT	4 cut(s)	169, 347, 424, 489
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	360
AlwNI	CAGNNNCTG	1 cut(s)	151
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	145, 424
ApoI	RAATTY	1 cut(s)	482
AseI	ATTAAT	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	157, 411
BccI	CCATC	3 cut(s)	241, 329, 380
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	146, 425
BlsI	GCNGC	2 cut(s)	147, 426
Bme1390I	CCNGG	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	58, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	58, 192
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	157, 411
BseYI	CCCAGC	1 cut(s)	119
BsgI	GTGCAG	1 cut(s)	458
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp1407I	TGTACA	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	58
BspANI	GGCC	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	58, 192
BssMI	GATC	1 cut(s)	214
BssNAI	GTATAC	1 cut(s)	506
BssT1I	CCWWGG	1 cut(s)	58
Bst1107I	GTATAC	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	3 cut(s)	17, 77, 510
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstAUI	TGTACA	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	469
BstDSI	CCRYGG	2 cut(s)	58, 192
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	2 cut(s)	373, 471
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	157, 411
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstZ17I	GTATAC	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	211
BtgI	CCRYGG	2 cut(s)	58, 192
BtsCI	GGATG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	469
CaiI	CAGNNNCTG	1 cut(s)	151
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	254, 313
CviAII	CATG	8 cut(s)	59, 164, 173, 275, 370, 452, 468, 596
CviJI	RGCY	7 cut(s)	33, 169, 211, 285, 347, 424, 489
CviKI_1	RGCY	7 cut(s)	33, 169, 211, 285, 347, 424, 489
CviQI	GTAC	2 cut(s)	254, 313
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	8 cut(s)	62, 167, 176, 278, 373, 455, 471, 599
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	8 cut(s)	58, 163, 172, 274, 369, 451, 467, 595
FblI	GTMKAC	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	146, 425
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	146, 425
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	2 cut(s)	146, 425
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	8 cut(s)	62, 167, 176, 278, 373, 455, 471, 599
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	254, 506
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	4 cut(s)	40, 173, 396, 515
Hpy8I	GTNNAC	2 cut(s)	254, 506
HpyCH4III	ACNGT	3 cut(s)	17, 77, 510
HpyCH4V	TGCA	7 cut(s)	221, 308, 403, 427, 439, 451, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
Hsp92II	CATG	8 cut(s)	62, 167, 176, 278, 373, 455, 471, 599
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	25, 107
LpnPI	CCDG	8 cut(s)	15, 53, 133, 225, 348, 375, 381, 552
Lsp1109I	GCAGC	2 cut(s)	157, 411
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	24
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	9 cut(s)	46, 405, 458, 482, 498, 518, 522, 528, 590
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	4 cut(s)	148, 337, 427, 457
MseI	TTAA	5 cut(s)	35, 263, 419, 497, 521
MspR9I	CCNGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	8 cut(s)	62, 167, 176, 278, 373, 455, 471, 599
NlaIV	GGNNCC	1 cut(s)	82
NspI	RCATGY	2 cut(s)	373, 471
PaeI	GCATGC	1 cut(s)	471
PagI	TCATGA	1 cut(s)	172
PctI	GAATGC	1 cut(s)	405
PflFI	GACNNNGTC	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	147, 426
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PshBI	ATTAAT	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	98
RsaI	GTAC	2 cut(s)	255, 314
RsaNI	GTAC	2 cut(s)	254, 313
SaqAI	TTAA	5 cut(s)	35, 263, 419, 497, 521
SatI	GCNGC	2 cut(s)	146, 425
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	8 cut(s)	171, 235, 262, 318, 349, 426, 438, 491
SfaNI	GCATC	1 cut(s)	178
SphI	GCATGC	1 cut(s)	471
Sse9I	AATT	9 cut(s)	46, 405, 458, 482, 498, 518, 522, 528, 590
SspI	AATATT	1 cut(s)	68
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	3 cut(s)	17, 77, 510
TaqI	TCGA	2 cut(s)	301, 560
TasI	AATT	9 cut(s)	46, 405, 458, 482, 498, 518, 522, 528, 590
TatI	WGTACW	1 cut(s)	253
Tru1I	TTAA	5 cut(s)	35, 263, 419, 497, 521
Tru9I	TTAA	5 cut(s)	35, 263, 419, 497, 521
TseI	GCWGC	2 cut(s)	145, 424
TspDTI	ATGAA	6 cut(s)	161, 189, 381, 468, 535, 584
TspGWI	ACGGA	1 cut(s)	425
Tth111I	GACNNNGTC	1 cut(s)	98
VspI	ATTAAT	1 cut(s)	521
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	482
XceI	RCATGY	2 cut(s)	373, 471
XmiI	GTMKAC	1 cut(s)	505
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.