AT2G01660

pdlp6 pdlp6 (plasmodesmata-located protein 6)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009865
Physical Location & Seq
Reverse (-)
290573 .. 292688
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01660.3

Sequence Viewer

Length: 867 bp
ATGTTCGCTACAAAAACAGTTCTCTTTATCGCCGTCGTGTCACTTCTCGGAACGTTTTCATCCGCCGCTGTCGATACTTTTATCTACGGTGGTTGCTCACAAGAAAAGTACTTTCCGGGATCGCCTTACGAGTCAAACGTTAACTCTCTACTCACCTCGTTCGTTAGCTCAGCTTCTCTCTACACATACAACAACTTCACCACCAACGGAATCTCCGGCGACAGTTCCTCCGTCTACGGTTTGTACCAGTGTCGCGGTGATCTCTCCTCCGGCTCGGGAGATTGTGCAAGATGCGTCGCGCGAGCAGTAAGCCGTCTAGGGAGTCTCTGCGCCATGGCAAGCGGTGGCGCGTTGCAGCTCGAAGGCTGTTTCGTTAAATACGACAACACGACGTTCCTCGGTGTTGAGGATAAGACGGTGGTGGTTCGACGTTGTGGACCACCGGTTGGTTATAACTCGGACGAGATGACTCGTAGAGACTCGGTGGTGGGTTCTTTAGCGGCGAGTAGCGGTGGTTCATACAGAGTAGGAGTGTCGGGGGAACTGCAAGGTGTGGCGCAGTGCACCGGAGATCTTAGTGCGACTGAGTGTCAAGACTGTTTGATGGAAGCGATCGGACGGCTGAGAACGGATTGCGGAGGAGCTGCTTGGGGTGACGTGTACTTAGCAAAGTGCTACGCGCGTTACTCTGCGCGTGGAGGTCACTCTAGAGCCAACGGCTATGGTGGGAATCGTAATAACAATGATGACGATGAGATAGAGAAAACACTTGCAATCATAGTTGGCTTAATTGCTGGAGTTACGTTACTCGTCGTATTTCTCTCTTTTATGGCAAAATCGTGCGAGAGAGGTAAAGGTGGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

288

Amino Acids

30.2

Weight (kDa)

5.92

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 32 - 129 1.5e-18 Salt stress response/antifungal
Stress-antifung PF01657 174 - 231 6.9e-09 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01660 AT2G01660 AT2G01660
fragaria_vesca FvH4_4g33800 FvH4_4g33800 FvH4_4g33800
malus_domestica MD04G1025700.v1.1 MD13G1029600.v1.1 MD16G1020400.v1.1
prunus_persica Prupe.1G331900_v2.0.a1
pyrus_communis pycom16g01830
rosa_chinensis RchiOBHm_Chr4g0443311
rosa_laevigata RLG00000005939
rosa_multiflora Rmu_ssc0000122.1_g000006
rosa_roxburghii Rroxscaffold_5G00383890
rosa_rugosa Rorug04G0345500
rosa_samantha Rh4AG400400 Rh4BG412000 Rh4CG427400 Rh4DG407400
rosa_wichuraiana Rw4G034540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 446
AccI GTMKAC 1 cut(s) 234
AccII CGCG 7 cut(s) 255, 299, 301, 350, 680, 682, 694
AciI CCGC 7 cut(s) 63, 66, 255, 342, 500, 510, 636
AclI AACGTT 2 cut(s) 53, 138
AclWI GGATC 1 cut(s) 127
AfaI GTAC 3 cut(s) 110, 245, 662
AfiI CCNNNNNNNGG 1 cut(s) 446
AflIII ACRYGT 1 cut(s) 657
AgeI ACCGGT 1 cut(s) 442
AhdI GACNNNNNGTC 1 cut(s) 588
AjiI CACGTC 1 cut(s) 658
AluBI AGCT 4 cut(s) 168, 173, 358, 644
AluI AGCT 4 cut(s) 168, 173, 358, 644
Alw21I GWGCWC 1 cut(s) 566
Alw26I GTCTC 2 cut(s) 329, 471
Alw44I GTGCAC 1 cut(s) 562
AlwI GGATC 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 274
ApaLI GTGCAC 1 cut(s) 562
ApeKI GCWGC 2 cut(s) 355, 644
AsiGI ACCGGT 1 cut(s) 442
Asp700I GAANNNNTTC 1 cut(s) 55
AspLEI GCGC 6 cut(s) 301, 332, 350, 559, 682, 694
AspS9I GGNCC 1 cut(s) 437
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 4 cut(s) 145, 190, 269, 665
AvaI CYCGRG 1 cut(s) 274
AvaII GGWCC 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 566
BbvI GCAGC 2 cut(s) 367, 631
BccI CCATC 1 cut(s) 598
BceAI ACGGC 4 cut(s) 17, 297, 635, 733
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 329, 471
BfaI CTAG 2 cut(s) 317, 708
BglII AGATCT 1 cut(s) 571
BisI GCNGC 4 cut(s) 66, 356, 501, 645
BlpI GCTNAGC 1 cut(s) 169
BlsI GCNGC 4 cut(s) 67, 357, 502, 646
BmcAI AGTACT 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 437
BmeRI GACNNNNNGTC 1 cut(s) 588
BmeT110I CYCGRG 1 cut(s) 274
BmgBI CACGTC 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 437
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 816
Bpu1102I GCTNAGC 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 333, 397
BsaWI WCCGGW 2 cut(s) 442, 566
BsaXI ACNNNNNCTCC 4 cut(s) 197, 212, 227, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 333, 397
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMII CTCAG 3 cut(s) 183, 576, 614
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 2 cut(s) 256, 654
BseSI GKGCMC 1 cut(s) 566
BseXI GCAGC 2 cut(s) 367, 631
Bsh1236I CGCG 7 cut(s) 255, 299, 301, 350, 680, 682, 694
Bsh1285I CGRYCG 1 cut(s) 615
BshTI ACCGGT 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 615
BsiHKAI GWGCWC 1 cut(s) 566
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 5 cut(s) 116, 216, 270, 443, 567
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 2 cut(s) 329, 471
BsoBI CYCGRG 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 566
Bsp143I GATC 4 cut(s) 119, 259, 571, 612
Bsp1720I GCTNAGC 1 cut(s) 169
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 7 cut(s) 63, 66, 255, 342, 500, 510, 636
BspCNI CTCAG 3 cut(s) 182, 577, 615
BspFNI CGCG 7 cut(s) 255, 299, 301, 350, 680, 682, 694
BspPI GGATC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 333, 397
BssMI GATC 4 cut(s) 119, 259, 571, 612
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 6 cut(s) 19, 89, 224, 239, 418, 599
BstC8I GCNNGC 2 cut(s) 303, 340
BstDEI CTNAG 5 cut(s) 169, 575, 585, 623, 664
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 7 cut(s) 255, 299, 301, 350, 680, 682, 694
BstHHI GCGC 6 cut(s) 301, 332, 350, 559, 682, 694
BstKTI GATC 4 cut(s) 122, 262, 574, 615
BstMAI GTCTC 2 cut(s) 329, 471
BstMBI GATC 4 cut(s) 119, 259, 571, 612
BstMCI CGRYCG 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 115
BstSLI GKGCMC 1 cut(s) 566
BstUI CGCG 7 cut(s) 255, 299, 301, 350, 680, 682, 694
BstV1I GCAGC 2 cut(s) 367, 631
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
BtgI CCRYGG 1 cut(s) 333
BtrI CACGTC 1 cut(s) 658
BtsCI GGATG 1 cut(s) 59
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 2 cut(s) 254, 566
Cac8I GCNNGC 2 cut(s) 303, 340
CfoI GCGC 6 cut(s) 301, 332, 350, 559, 682, 694
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 437
CseI GACGC 1 cut(s) 283
Csp6I GTAC 3 cut(s) 109, 244, 661
CspAI ACCGGT 1 cut(s) 442
CviAII CATG 1 cut(s) 334
CviQI GTAC 3 cut(s) 109, 244, 661
DdeI CTNAG 5 cut(s) 169, 575, 585, 623, 664
DpnI GATC 4 cut(s) 121, 261, 573, 614
DpnII GATC 4 cut(s) 119, 259, 571, 612
DriI GACNNNNNGTC 1 cut(s) 588
Eam1105I GACNNNNNGTC 1 cut(s) 588
EciI GGCGGA 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 437
Eco88I CYCGRG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 1 cut(s) 337
FaiI YATR 7 cut(s) 187, 335, 453, 520, 723, 779, 830
FatI CATG 1 cut(s) 333
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 4 cut(s) 66, 356, 501, 645
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 4 cut(s) 66, 356, 501, 645
FspBI CTAG 2 cut(s) 317, 708
GlaI GCGC 6 cut(s) 300, 331, 349, 558, 681, 693
GluI GCNGC 4 cut(s) 66, 356, 501, 645
GsuI CTGGAG 1 cut(s) 816
HapII CCGG 5 cut(s) 116, 216, 270, 443, 567
HgaI GACGC 1 cut(s) 283
HhaI GCGC 6 cut(s) 301, 332, 350, 559, 682, 694
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 6 cut(s) 299, 330, 348, 557, 680, 692
HinP1I GCGC 6 cut(s) 299, 330, 348, 557, 680, 692
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 6 cut(s) 131, 210, 322, 469, 479, 730
HpaI GTTAAC 1 cut(s) 142
HpaII CCGG 5 cut(s) 116, 216, 270, 443, 567
HphI GGTGA 4 cut(s) 145, 190, 269, 665
Hpy166II GTNNAC 5 cut(s) 142, 235, 437, 564, 661
Hpy188I TCNGA 3 cut(s) 50, 460, 617
Hpy188III TCNNGA 3 cut(s) 276, 593, 708
Hpy8I GTNNAC 5 cut(s) 142, 235, 437, 564, 661
Hpy99I CGWCG 5 cut(s) 38, 299, 394, 432, 815
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 6 cut(s) 19, 89, 224, 239, 418, 599
HpyCH4IV ACGT 6 cut(s) 53, 138, 392, 430, 657, 803
HpyCH4V TGCA 5 cut(s) 287, 355, 547, 564, 773
HpyF3I CTNAG 5 cut(s) 169, 575, 585, 623, 664
HpySE526I ACGT 6 cut(s) 53, 138, 392, 430, 657, 803
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 6 cut(s) 299, 330, 348, 557, 680, 692
KspAI GTTAAC 1 cut(s) 142
Kzo9I GATC 4 cut(s) 119, 259, 571, 612
LmnI GCTCC 1 cut(s) 641
LpnPI CCDG 7 cut(s) 129, 229, 260, 283, 456, 580, 780
Lsp1109I GCAGC 2 cut(s) 367, 631
LweI GCATC 1 cut(s) 281
MaeI CTAG 2 cut(s) 317, 708
MaeII ACGT 6 cut(s) 53, 138, 392, 430, 657, 803
MaeIII GTNAC 6 cut(s) 39, 653, 683, 701, 799, 804
MalI GATC 4 cut(s) 121, 261, 573, 614
MboI GATC 4 cut(s) 119, 259, 571, 612
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 1 cut(s) 566
MluCI AATT 1 cut(s) 789
MlyI GAGTC 4 cut(s) 140, 331, 463, 473
MnlI CCTC 8 cut(s) 166, 238, 277, 400, 407, 632, 692, 842
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 3 cut(s) 141, 375, 788
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 5 cut(s) 116, 216, 270, 443, 567
MspR9I CCNGG 1 cut(s) 117
MvnI CGCG 7 cut(s) 255, 299, 301, 350, 680, 682, 694
NciI CCSGG 1 cut(s) 117
NcoI CCATGG 1 cut(s) 333
NdeII GATC 4 cut(s) 119, 259, 571, 612
NlaIII CATG 1 cut(s) 337
NmuCI GTSAC 3 cut(s) 39, 653, 701
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 378
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 210, 730
PflMI CCANNNNNTGG 1 cut(s) 446
PfoI TCCNGGA 1 cut(s) 115
PinAI ACCGGT 1 cut(s) 442
PkrI GCNGC 4 cut(s) 67, 357, 502, 646
Ple19I CGATCG 1 cut(s) 615
PleI GAGTC 4 cut(s) 139, 330, 463, 473
PpsI GAGTC 4 cut(s) 139, 330, 463, 473
PsiI TTATAA 1 cut(s) 453
Psp1406I AACGTT 2 cut(s) 53, 138
PspPI GGNCC 1 cut(s) 437
PsrI GAACNNNNNNTAC 2 cut(s) 499, 531
PsuI RGATCY 1 cut(s) 571
PvuI CGATCG 1 cut(s) 615
RsaI GTAC 3 cut(s) 110, 245, 662
RsaNI GTAC 3 cut(s) 109, 244, 661
SaqAI TTAA 3 cut(s) 141, 375, 788
SatI GCNGC 4 cut(s) 66, 356, 501, 645
Sau3AI GATC 4 cut(s) 119, 259, 571, 612
Sau96I GGNCC 1 cut(s) 437
ScaI AGTACT 1 cut(s) 110
SchI GAGTC 4 cut(s) 140, 331, 463, 473
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 566
SfaNI GCATC 1 cut(s) 281
SinI GGWCC 1 cut(s) 437
Sse9I AATT 1 cut(s) 789
SsiI CCGC 7 cut(s) 63, 66, 255, 342, 500, 510, 636
SspMI CTAG 2 cut(s) 317, 708
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 6 cut(s) 19, 89, 224, 239, 418, 599
TaiI ACGT 6 cut(s) 56, 141, 395, 433, 660, 806
TaqI TCGA 3 cut(s) 72, 360, 427
TasI AATT 1 cut(s) 789
TatI WGTACW 2 cut(s) 108, 660
TauI GCSGC 2 cut(s) 68, 503
TfiI GAWTC 2 cut(s) 210, 730
Tru1I TTAA 3 cut(s) 141, 375, 788
Tru9I TTAA 3 cut(s) 141, 375, 788
TscAI CASTG 2 cut(s) 254, 566
TseFI GTSAC 3 cut(s) 39, 653, 701
TseI GCWGC 2 cut(s) 355, 644
Tsp45I GTSAC 3 cut(s) 39, 653, 701
TspDTI ATGAA 2 cut(s) 48, 507
TspGWI ACGGA 3 cut(s) 220, 222, 644
TspRI CASTG 2 cut(s) 254, 566
Van91I CCANNNNNTGG 1 cut(s) 446
VneI GTGCAC 1 cut(s) 562
VpaK11BI GGWCC 1 cut(s) 437
XbaI TCTAGA 1 cut(s) 707
XmiI GTMKAC 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 2 cut(s) 317, 708
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.