Rroxscaffold_5G00383890

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009865
Physical Location & Seq
Forward (+)
63431949 .. 63434900
2952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383890.1

Sequence Viewer

Length: 744 bp
ATGAAGCTCAACTCCATATTGGCCTCCGTGGTCAACTCGGCCATGTTCACTACTTACAACAACTTCACGGTCCCCGGATCGTCGGGCACCGCGGACACGCTCTATGGCGTGTTCCAGTGCCGCGGTGACCTGAGCGGCAATGACTGTGCGCAGTGCGTGGCACGCGCCGTCAGCCAGCTCGGCACGCTCTGCCTGGACGCTTGCGGTGGCGCGTTGCAGCTGGACGGGTGCTTCGTCAAGTACGACAACGCCACCTTCTTGGGGGTGGAGGACAAGACCGTGGTGATGAAGAAGTGTGGGCCGTCGATTGGGTATGACTCGGAGGGGTTGACCAGGAGGGATGCTGTGCTGGCTTATCTCGGGACCAGTGATGGGGCCTACCGGCCCTTCAGGGTGAGTGGCGCCGGAAATGTCCAGGGTGTGGCGCAGTGCGTCGGGGACTTGAGTCCGAGTGAGTGCCAGGATTGTCTGTCCGACGCCGTAGGGCAGTTGAGGGCTGGCTGTGGGACCAGCACGTGGGGGGACTTGTTCTTGGCCAAGTGCTACGCGCGCTACTCGGAAGGTGGATATCACTCGCAGGGCCATGATCACAATGACGACGACGACGACGACGATGATCTTGATAGGACGCTTGCAATACTGATTGGAATCATAGCAGCAGTTGCACTGCTCGTCGTATTTCTTTCTTACTTCAGAAAATATTTGTGTGGAGATGAGTGTGGAGATGAAAAAGGTGGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

247

Amino Acids

26.11

Weight (kDa)

4.48

Isoelectric Point (pI)

29.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 2 - 83 5.5e-15 Salt stress response/antifungal
Stress-antifung PF01657 130 - 187 7.3e-10 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01660 AT2G01660 AT2G01660
fragaria_vesca FvH4_4g33800 FvH4_4g33800 FvH4_4g33800
malus_domestica MD04G1025700.v1.1 MD13G1029600.v1.1 MD16G1020400.v1.1
prunus_persica Prupe.1G331900_v2.0.a1
pyrus_communis pycom16g01830
rosa_chinensis RchiOBHm_Chr4g0443311
rosa_laevigata RLG00000005939
rosa_multiflora Rmu_ssc0000122.1_g000006
rosa_roxburghii Rroxscaffold_5G00383890
rosa_rugosa Rorug04G0345500
rosa_samantha Rh4AG400400 Rh4BG412000 Rh4CG427400 Rh4DG407400
rosa_wichuraiana Rw4G034540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 150
AccB1I GGYRCC 2 cut(s) 86, 401
AccB7I CCANNNNNTGG 2 cut(s) 421, 516
AccBSI CCGCTC 1 cut(s) 135
AccII CGCG 6 cut(s) 92, 123, 165, 212, 548, 550
AciI CCGC 6 cut(s) 90, 92, 121, 123, 135, 204
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 2 cut(s) 39, 534
AcuI CTGAAG 2 cut(s) 373, 676
AcvI CACGTG 1 cut(s) 516
AcyI GRCGYC 2 cut(s) 402, 477
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 5 cut(s) 261, 308, 372, 421, 516
AjnI CCWGG 4 cut(s) 192, 332, 414, 459
AluBI AGCT 3 cut(s) 7, 178, 220
AluI AGCT 3 cut(s) 7, 178, 220
AlwI GGATC 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 7 cut(s) 21, 39, 299, 375, 383, 534, 580
ApeKI GCWGC 2 cut(s) 217, 656
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspLEI GCGC 7 cut(s) 151, 167, 212, 404, 427, 550, 552
AspS9I GGNCC 7 cut(s) 70, 299, 363, 375, 384, 507, 580
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 3 cut(s) 137, 295, 406
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 3 cut(s) 70, 363, 507
BaeGI GKGCMC 1 cut(s) 89
BalI TGGCCA 1 cut(s) 536
BanI GGYRCC 2 cut(s) 86, 401
BbrPI CACGTG 1 cut(s) 516
BbvI GCAGC 2 cut(s) 229, 668
BccI CCATC 1 cut(s) 365
BceAI ACGGC 3 cut(s) 152, 286, 464
BciT130I CCWGG 4 cut(s) 194, 334, 416, 461
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 405
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 4 cut(s) 121, 136, 218, 657
BlsI GCNGC 4 cut(s) 122, 137, 219, 658
Bme1390I CCNGG 5 cut(s) 75, 194, 334, 416, 461
Bme18I GGWCC 3 cut(s) 70, 363, 507
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 7 cut(s) 70, 299, 363, 375, 384, 507, 580
BmiI GGNNCC 6 cut(s) 72, 88, 364, 376, 403, 508
BmrFI CCNGG 5 cut(s) 75, 194, 334, 416, 461
BmsI GCATC 1 cut(s) 331
BoxI GACNNNNGTC 1 cut(s) 444
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 463
BpuMI CCSGG 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 516
BsaBI GATNNNNATC 1 cut(s) 647
BsaHI GRCGYC 2 cut(s) 402, 477
BsaJI CCNNGG 6 cut(s) 27, 73, 90, 121, 279, 415
Bsc4I CCNNNNNNNGG 5 cut(s) 261, 308, 372, 421, 516
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 2 cut(s) 115, 366
Bse3DI GCAATG 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 647
BseBI CCWGG 4 cut(s) 194, 334, 416, 461
BseDI CCNNGG 6 cut(s) 27, 73, 90, 121, 279, 415
BseGI GGATG 1 cut(s) 346
BseJI GATNNNNATC 1 cut(s) 647
BseLI CCNNNNNNNGG 5 cut(s) 261, 308, 372, 421, 516
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 115, 366
BsePI GCGCGC 1 cut(s) 548
BseSI GKGCMC 1 cut(s) 89
BseXI GCAGC 2 cut(s) 229, 668
Bsh1236I CGCG 6 cut(s) 92, 123, 165, 212, 548, 550
BshFI GGCC 7 cut(s) 23, 41, 301, 377, 385, 536, 582
BshNI GGYRCC 2 cut(s) 86, 401
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 3 cut(s) 75, 382, 405
BslFI GGGAC 5 cut(s) 56, 376, 452, 520, 536
BslI CCNNNNNNNGG 5 cut(s) 261, 308, 372, 421, 516
BsmFI GGGAC 5 cut(s) 56, 376, 452, 520, 536
BsnI GGCC 7 cut(s) 23, 41, 301, 377, 385, 536, 582
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 77, 586, 616
BspACI CCGC 6 cut(s) 90, 92, 121, 123, 135, 204
BspANI GGCC 7 cut(s) 23, 41, 301, 377, 385, 536, 582
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 6 cut(s) 92, 123, 165, 212, 548, 550
BspLI GGNNCC 6 cut(s) 72, 88, 364, 376, 403, 508
BspPI GGATC 1 cut(s) 85
BspT107I GGYRCC 2 cut(s) 86, 401
BsrBI CCGCTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 2 cut(s) 115, 366
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 6 cut(s) 27, 73, 90, 121, 279, 415
BssHII GCGCGC 1 cut(s) 548
BssMI GATC 3 cut(s) 77, 586, 616
BssNI GRCGYC 2 cut(s) 402, 477
Bst2UI CCWGG 4 cut(s) 194, 334, 416, 461
Bst4CI ACNGT 3 cut(s) 70, 146, 280
BstACI GRCGYC 2 cut(s) 402, 477
BstAPI GCANNNNNTGC 2 cut(s) 189, 662
BstBAI YACGTR 1 cut(s) 516
BstC8I GCNNGC 8 cut(s) 163, 176, 185, 202, 351, 499, 550, 633
BstDEI CTNAG 1 cut(s) 131
BstDSI CCRYGG 4 cut(s) 27, 90, 121, 279
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 6 cut(s) 92, 123, 165, 212, 548, 550
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 7 cut(s) 151, 167, 212, 404, 427, 550, 552
BstKTI GATC 3 cut(s) 80, 589, 619
BstMBI GATC 3 cut(s) 77, 586, 616
BstMWI GCNNNNNNNGC 8 cut(s) 162, 171, 180, 184, 189, 350, 549, 662
BstNI CCWGG 4 cut(s) 194, 334, 416, 461
BstPAI GACNNNNGTC 1 cut(s) 444
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 5 cut(s) 73, 192, 332, 414, 459
BstSLI GKGCMC 1 cut(s) 89
BstUI CGCG 6 cut(s) 92, 123, 165, 212, 548, 550
BstV1I GCAGC 2 cut(s) 229, 668
BstXI CCANNNNNNTGG 1 cut(s) 259
BsuRI GGCC 7 cut(s) 23, 41, 301, 377, 385, 536, 582
BtgI CCRYGG 4 cut(s) 27, 90, 121, 279
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 3 cut(s) 158, 434, 665
BtsIMutI CAGTG 5 cut(s) 122, 158, 373, 434, 665
Cac8I GCNNGC 8 cut(s) 163, 176, 185, 202, 351, 499, 550, 633
CfoI GCGC 7 cut(s) 151, 167, 212, 404, 427, 550, 552
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 7 cut(s) 70, 299, 363, 375, 384, 507, 580
Cfr42I CCGCGG 2 cut(s) 93, 124
CseI GACGC 4 cut(s) 206, 421, 485, 637
Csp6I GTAC 1 cut(s) 241
CviAII CATG 2 cut(s) 43, 584
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 131
DinI GGCGCC 1 cut(s) 403
DpnI GATC 3 cut(s) 79, 588, 618
DpnII GATC 3 cut(s) 77, 586, 616
EaeI YGGCCR 2 cut(s) 39, 534
Eco32I GATATC 1 cut(s) 569
Eco47I GGWCC 3 cut(s) 70, 363, 507
Eco57I CTGAAG 2 cut(s) 373, 676
Eco72I CACGTG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 359
Eco91I GGTNACC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 375
EcoO65I GGTNACC 1 cut(s) 125
EcoRII CCWGG 4 cut(s) 192, 332, 414, 459
EcoRV GATATC 1 cut(s) 569
EgeI GGCGCC 1 cut(s) 403
EheI GGCGCC 1 cut(s) 403
FaeI CATG 2 cut(s) 46, 587
FaiI YATR 6 cut(s) 17, 44, 105, 315, 585, 653
FaqI GGGAC 5 cut(s) 56, 376, 452, 520, 536
FatI CATG 2 cut(s) 42, 583
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 4 cut(s) 121, 136, 218, 657
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 4 cut(s) 121, 136, 218, 657
FspI TGCGCA 1 cut(s) 150
GlaI GCGC 7 cut(s) 150, 166, 211, 403, 426, 549, 551
GluI GCNGC 4 cut(s) 121, 136, 218, 657
HaeII RGCGCY 1 cut(s) 405
HaeIII GGCC 7 cut(s) 23, 41, 301, 377, 385, 536, 582
HapII CCGG 3 cut(s) 75, 382, 405
HgaI GACGC 4 cut(s) 206, 421, 485, 637
HhaI GCGC 7 cut(s) 151, 167, 212, 404, 427, 550, 552
Hin1I GRCGYC 2 cut(s) 402, 477
Hin1II CATG 2 cut(s) 46, 587
Hin6I GCGC 7 cut(s) 149, 165, 210, 402, 425, 548, 550
HinP1I GCGC 7 cut(s) 149, 165, 210, 402, 425, 548, 550
HincII GTYRAC 2 cut(s) 34, 330
HindII GTYRAC 2 cut(s) 34, 330
HinfI GANTC 3 cut(s) 317, 445, 648
HpaII CCGG 3 cut(s) 75, 382, 405
HphI GGTGA 3 cut(s) 137, 295, 406
Hpy166II GTNNAC 3 cut(s) 34, 48, 330
Hpy188I TCNGA 5 cut(s) 322, 450, 475, 559, 695
Hpy188III TCNNGA 2 cut(s) 361, 620
Hpy8I GTNNAC 3 cut(s) 34, 48, 330
HpyAV CCTTC 3 cut(s) 265, 397, 554
HpyCH4III ACNGT 3 cut(s) 70, 146, 280
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 3 cut(s) 217, 635, 665
HpyF10VI GCNNNNNNNGC 8 cut(s) 162, 171, 180, 184, 189, 350, 549, 662
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 515
Hsp92I GRCGYC 2 cut(s) 402, 477
Hsp92II CATG 2 cut(s) 46, 587
HspAI GCGC 7 cut(s) 149, 165, 210, 402, 425, 548, 550
KasI GGCGCC 1 cut(s) 401
Ksp22I TGATCA 1 cut(s) 586
KspI CCGCGG 2 cut(s) 93, 124
Kzo9I GATC 3 cut(s) 77, 586, 616
Lsp1109I GCAGC 2 cut(s) 229, 668
LweI GCATC 1 cut(s) 331
MaeII ACGT 1 cut(s) 515
MaeIII GTNAC 1 cut(s) 125
MalI GATC 3 cut(s) 79, 588, 618
MbiI CCGCTC 1 cut(s) 135
MboI GATC 3 cut(s) 77, 586, 616
MboII GAAGA 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 89
MlsI TGGCCA 1 cut(s) 536
MluNI TGGCCA 1 cut(s) 536
Mly113I GGCGCC 1 cut(s) 402
MlyI GAGTC 2 cut(s) 311, 454
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 5 cut(s) 34, 262, 316, 330, 486
Mox20I TGGCCA 1 cut(s) 536
MscI TGGCCA 1 cut(s) 536
Msp20I TGGCCA 1 cut(s) 536
MspA1I CMGCKG 3 cut(s) 92, 123, 220
MspI CCGG 3 cut(s) 75, 382, 405
MspR9I CCNGG 5 cut(s) 75, 194, 334, 416, 461
MvaI CCWGG 4 cut(s) 194, 334, 416, 461
MvnI CGCG 6 cut(s) 92, 123, 165, 212, 548, 550
MwoI GCNNNNNNNGC 8 cut(s) 162, 171, 180, 184, 189, 350, 549, 662
NarI GGCGCC 1 cut(s) 402
NciI CCSGG 1 cut(s) 75
NdeII GATC 3 cut(s) 77, 586, 616
NlaIII CATG 2 cut(s) 46, 587
NlaIV GGNNCC 6 cut(s) 72, 88, 364, 376, 403, 508
NmeAIII GCCGAG 2 cut(s) 17, 159
NmuCI GTSAC 1 cut(s) 125
NsbI TGCGCA 1 cut(s) 150
PauI GCGCGC 1 cut(s) 548
PcsI WCGNNNNNNNCGW 5 cut(s) 231, 240, 603, 606, 609
PfeI GAWTC 1 cut(s) 648
PflMI CCANNNNNTGG 2 cut(s) 421, 516
PkrI GCNGC 4 cut(s) 122, 137, 219, 658
PleI GAGTC 2 cut(s) 311, 453
PluTI GGCGCC 1 cut(s) 405
PmaCI CACGTG 1 cut(s) 516
PmlI CACGTG 1 cut(s) 516
PpsI GAGTC 2 cut(s) 311, 453
Ppu21I YACGTR 1 cut(s) 516
PshAI GACNNNNGTC 1 cut(s) 444
Psp6I CCWGG 4 cut(s) 192, 332, 414, 459
PspCI CACGTG 1 cut(s) 516
PspEI GGTNACC 1 cut(s) 125
PspGI CCWGG 4 cut(s) 192, 332, 414, 459
PspN4I GGNNCC 6 cut(s) 72, 88, 364, 376, 403, 508
PspPI GGNCC 7 cut(s) 70, 299, 363, 375, 384, 507, 580
PteI GCGCGC 1 cut(s) 548
PvuII CAGCTG 1 cut(s) 220
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SacII CCGCGG 2 cut(s) 93, 124
SatI GCNGC 4 cut(s) 121, 136, 218, 657
Sau3AI GATC 3 cut(s) 77, 586, 616
Sau96I GGNCC 7 cut(s) 70, 299, 363, 375, 384, 507, 580
SchI GAGTC 2 cut(s) 311, 454
ScrFI CCNGG 5 cut(s) 75, 194, 334, 416, 461
SduI GDGCHC 1 cut(s) 89
SetI ASST 8 cut(s) 9, 132, 180, 222, 257, 518, 565, 736
SfaNI GCATC 1 cut(s) 331
SfoI GGCGCC 1 cut(s) 403
Sfr303I CCGCGG 2 cut(s) 93, 124
SgrBI CCGCGG 2 cut(s) 93, 124
SinI GGWCC 3 cut(s) 70, 363, 507
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
SsiI CCGC 6 cut(s) 90, 92, 121, 123, 135, 204
SspDI GGCGCC 1 cut(s) 401
SspI AATATT 1 cut(s) 701
StyD4I CCNGG 5 cut(s) 73, 192, 332, 414, 459
TaaI ACNGT 3 cut(s) 70, 146, 280
TaiI ACGT 1 cut(s) 518
TaqI TCGA 1 cut(s) 305
TauI GCSGC 2 cut(s) 123, 138
TfiI GAWTC 1 cut(s) 648
TscAI CASTG 5 cut(s) 122, 158, 373, 434, 672
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 2 cut(s) 217, 656
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 17, 302, 741
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 5 cut(s) 122, 158, 373, 434, 672
Van91I CCANNNNNTGG 2 cut(s) 421, 516
VpaK11BI GGWCC 3 cut(s) 70, 363, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.