pycom16g01830

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0009865
Physical Location & Seq
Forward (+)
1126815 .. 1128932
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g01830.2

Sequence Viewer

Length: 882 bp
ATGATGTCTTCTGTATTTGTTTTCCTCCTCACTATTTCCTTCCTCGCAACCCTATCATCCTCCGCAACCACTTCCTTCGTCTTCGGTGGCTGTTCCCAGCAAAAATACCTCCCGGGTTCGCCCTACGAGTCGAAAGTCAACTCGCTCCTCACCTCCCTGGTCAACTCAGCCATGTTCTCCACCTACAATAACTTCACCTTCCCCGGCAGCAGCTCCGCCGGCTCCCAGGACACCCTATATGGCCTCTTCCAATGCCGCGGCGACCTCAGCAACATTGACTGCTCCCAGTGCGTCGCTCGCTCGGTGAGTCAACTCGGAACCCTCTGCCTCGACTCCTGCGGTGGTGCGTTGCAGCTCGAGGGCTGCTTTGTGAAGTACGACAACGCGACGTTCTTAGGGGTGGAGGACAAGACCGTGGTTGTTAAGAAATGTGGGCCGTCGACTGGGTTTGACTCGGATTCGTTGACCAAGCGGGATGCCGTGCTGGCATATCTTGGGACCAGCGATGGGACTTACAGGCCGTACAGAGTCAGCGGCTCCGGGAGTGTTCAGGGCGTGGCGCAGTGTGTCGGGGATTTGAGTACGAGCGAGTGCCAAGATTGTCTGTCGGAAGCCGTCGGACAGCTCAGGTCCGGGTGCGGGACCAGCGCGTGGGGCGACATGTTCTTGGCTAAGTGCTACGTCCGCTACTCGGACGGTGGATATCACTCGCACGGCGGTCATGATGATCATGTTGACGTTGACGATGACGACGACGACAACGATGAGCTTGAGAAGACACTTGCAATACTCATCGGAATTATAGCAGCAGTTGCACTACTCGTCGTATTTCTTTACTACTTCCGAAAAAAATTGTATGGCGATGAAAAAGGTTGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

294

Amino Acids

31.32

Weight (kDa)

4.65

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01660 AT2G01660 AT2G01660
fragaria_vesca FvH4_4g33800 FvH4_4g33800 FvH4_4g33800
malus_domestica MD04G1025700.v1.1 MD13G1029600.v1.1 MD16G1020400.v1.1
prunus_persica Prupe.1G331900_v2.0.a1
pyrus_communis pycom16g01830
rosa_chinensis RchiOBHm_Chr4g0443311
rosa_laevigata RLG00000005939
rosa_multiflora Rmu_ssc0000122.1_g000006
rosa_roxburghii Rroxscaffold_5G00383890
rosa_rugosa Rorug04G0345500
rosa_samantha Rh4AG400400 Rh4BG412000 Rh4CG427400 Rh4DG407400
rosa_wichuraiana Rw4G034540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 651
AccI GTMKAC 1 cut(s) 440
AccII CGCG 3 cut(s) 258, 386, 650
AfaI GTAC 3 cut(s) 377, 524, 583
AfiI CCNNNNNNNGG 5 cut(s) 443, 507, 639, 651, 691
AflIII ACRYGT 1 cut(s) 660
AjnI CCWGG 2 cut(s) 156, 225
AluBI AGCT 4 cut(s) 213, 355, 625, 769
AluI AGCT 4 cut(s) 213, 355, 625, 769
Ama87I CYCGRG 2 cut(s) 112, 356
AoxI GGCC 3 cut(s) 241, 434, 518
ApeKI GCWGC 5 cut(s) 207, 210, 352, 363, 806
AspLEI GCGC 2 cut(s) 562, 650
AspS9I GGNCC 4 cut(s) 434, 498, 630, 642
AsuC2I CCSGG 5 cut(s) 113, 114, 204, 541, 634
AsuHPI GGTGA 3 cut(s) 142, 187, 316
AvaI CYCGRG 2 cut(s) 112, 356
AvaII GGWCC 3 cut(s) 498, 630, 642
BbsI GAAGAC 2 cut(s) 73, 782
BbvCI CCTCAGC 1 cut(s) 266
BbvI GCAGC 5 cut(s) 219, 222, 350, 364, 818
BccI CCATC 1 cut(s) 500
BceAI ACGGC 5 cut(s) 421, 464, 505, 599, 730
BciT130I CCWGG 2 cut(s) 158, 227
BclI TGATCA 1 cut(s) 727
BcnI CCSGG 5 cut(s) 113, 114, 204, 541, 634
BglI GCCNNNNNGGC 1 cut(s) 485
BisI GCNGC 8 cut(s) 208, 211, 256, 259, 353, 364, 535, 807
BlsI GCNGC 8 cut(s) 209, 212, 257, 260, 354, 365, 536, 808
Bme1390I CCNGG 7 cut(s) 113, 114, 158, 204, 227, 541, 634
Bme18I GGWCC 3 cut(s) 498, 630, 642
BmeT110I CYCGRG 2 cut(s) 112, 356
BmgT120I GGNCC 4 cut(s) 434, 498, 630, 642
BmiI GGNNCC 5 cut(s) 223, 319, 499, 538, 643
BmrFI CCNGG 7 cut(s) 113, 114, 158, 204, 227, 541, 634
BmrI ACTGGG 2 cut(s) 280, 453
BmsI GCATC 1 cut(s) 466
BmuI ACTGGG 2 cut(s) 280, 453
BpiI GAAGAC 2 cut(s) 73, 782
Bpu10I CCTNAGC 2 cut(s) 266, 626
BpuEI CTTGAG 1 cut(s) 791
BpuMI CCSGG 5 cut(s) 113, 114, 204, 541, 634
BsaJI CCNNGG 6 cut(s) 112, 156, 202, 225, 256, 414
Bsc4I CCNNNNNNNGG 5 cut(s) 443, 507, 639, 651, 691
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 286, 448
BseBI CCWGG 2 cut(s) 158, 227
BseDI CCNNGG 6 cut(s) 112, 156, 202, 225, 256, 414
BseGI GGATG 2 cut(s) 56, 481
BseLI CCNNNNNNNGG 5 cut(s) 443, 507, 639, 651, 691
BseMII CTCAG 3 cut(s) 180, 280, 640
BseNI ACTGG 2 cut(s) 286, 448
BseRI GAGGAG 2 cut(s) 17, 137
BseXI GCAGC 5 cut(s) 219, 222, 350, 364, 818
BseYI CCCAGC 1 cut(s) 96
Bsh1236I CGCG 3 cut(s) 258, 386, 650
BshFI GGCC 3 cut(s) 243, 436, 520
BsiHKCI CYCGRG 2 cut(s) 112, 356
BsiSI CCGG 5 cut(s) 113, 204, 219, 540, 633
BslFI GGGAC 3 cut(s) 511, 523, 655
BslI CCNNNNNNNGG 5 cut(s) 443, 507, 639, 651, 691
BsmFI GGGAC 3 cut(s) 511, 523, 655
BsnI GGCC 3 cut(s) 243, 436, 520
BsoBI CYCGRG 2 cut(s) 112, 356
Bsp143I GATC 1 cut(s) 727
BspANI GGCC 3 cut(s) 243, 436, 520
BspCNI CTCAG 3 cut(s) 179, 279, 639
BspFNI CGCG 3 cut(s) 258, 386, 650
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 5 cut(s) 223, 319, 499, 538, 643
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 2 cut(s) 286, 448
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 6 cut(s) 112, 156, 202, 225, 256, 414
BssMI GATC 1 cut(s) 727
Bst2UI CCWGG 2 cut(s) 158, 227
Bst4CI ACNGT 2 cut(s) 415, 698
Bst6I CTCTTC 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 812
BstC8I GCNNGC 3 cut(s) 220, 298, 486
BstDEI CTNAG 5 cut(s) 166, 266, 394, 626, 672
BstDSI CCRYGG 2 cut(s) 256, 414
BstF5I GGATG 2 cut(s) 56, 481
BstFNI CGCG 3 cut(s) 258, 386, 650
BstHHI GCGC 2 cut(s) 562, 650
BstKTI GATC 1 cut(s) 730
BstMBI GATC 1 cut(s) 727
BstMWI GCNNNNNNNGC 9 cut(s) 219, 267, 288, 297, 485, 645, 654, 684, 812
BstNI CCWGG 2 cut(s) 158, 227
BstNSI RCATGY 1 cut(s) 664
BstSCI CCNGG 7 cut(s) 111, 112, 156, 202, 225, 539, 632
BstUI CGCG 3 cut(s) 258, 386, 650
BstV1I GCAGC 5 cut(s) 219, 222, 350, 364, 818
BstV2I GAAGAC 2 cut(s) 73, 782
BsuRI GGCC 3 cut(s) 243, 436, 520
BtgI CCRYGG 2 cut(s) 256, 414
BtgZI GCGATG 2 cut(s) 519, 876
BtsCI GGATG 2 cut(s) 56, 481
BtsI GCAGTG 1 cut(s) 569
BtsIMutI CAGTG 2 cut(s) 293, 569
Cac8I GCNNGC 3 cut(s) 220, 298, 486
CciI TCATGA 1 cut(s) 721
CfoI GCGC 2 cut(s) 562, 650
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 4 cut(s) 434, 498, 630, 642
Cfr42I CCGCGG 1 cut(s) 259
Cfr9I CCCGGG 1 cut(s) 112
CseI GACGC 1 cut(s) 280
Csp6I GTAC 3 cut(s) 376, 523, 582
CviAII CATG 4 cut(s) 172, 661, 722, 731
CviQI GTAC 3 cut(s) 376, 523, 582
DdeI CTNAG 5 cut(s) 166, 266, 394, 626, 672
DpnI GATC 1 cut(s) 729
DpnII GATC 1 cut(s) 727
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 1 cut(s) 205
Eco32I GATATC 1 cut(s) 704
Eco47I GGWCC 3 cut(s) 498, 630, 642
Eco88I CYCGRG 2 cut(s) 112, 356
EcoRII CCWGG 2 cut(s) 156, 225
EcoRV GATATC 1 cut(s) 704
FaeI CATG 4 cut(s) 175, 664, 725, 734
FaiI YATR 9 cut(s) 173, 238, 240, 490, 662, 723, 732, 803, 858
FaqI GGGAC 3 cut(s) 511, 523, 655
FatI CATG 4 cut(s) 171, 660, 721, 730
FauI CCCGC 2 cut(s) 465, 632
FbaI TGATCA 1 cut(s) 727
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 8 cut(s) 208, 211, 256, 259, 353, 364, 535, 807
FokI GGATG 2 cut(s) 43, 488
Fsp4HI GCNGC 8 cut(s) 208, 211, 256, 259, 353, 364, 535, 807
GlaI GCGC 2 cut(s) 561, 649
GluI GCNGC 8 cut(s) 208, 211, 256, 259, 353, 364, 535, 807
GsaI CCCAGC 1 cut(s) 100
HaeIII GGCC 3 cut(s) 243, 436, 520
HapII CCGG 5 cut(s) 113, 204, 219, 540, 633
HgaI GACGC 1 cut(s) 280
HhaI GCGC 2 cut(s) 562, 650
Hin1II CATG 4 cut(s) 175, 664, 725, 734
Hin6I GCGC 2 cut(s) 560, 648
HinP1I GCGC 2 cut(s) 560, 648
HincII GTYRAC 7 cut(s) 139, 163, 311, 441, 465, 736, 742
HindII GTYRAC 7 cut(s) 139, 163, 311, 441, 465, 736, 742
HinfI GANTC 6 cut(s) 128, 307, 332, 452, 458, 528
HpaII CCGG 5 cut(s) 113, 204, 219, 540, 633
HphI GGTGA 3 cut(s) 142, 187, 316
Hpy166II GTNNAC 7 cut(s) 139, 163, 311, 441, 465, 736, 742
Hpy188I TCNGA 7 cut(s) 317, 457, 610, 620, 694, 797, 845
Hpy188III TCNNGA 1 cut(s) 722
Hpy8I GTNNAC 7 cut(s) 139, 163, 311, 441, 465, 736, 742
Hpy99I CGWCG 7 cut(s) 296, 391, 442, 620, 755, 758, 827
HpyAV CCTTC 3 cut(s) 49, 85, 208
HpyCH4III ACNGT 2 cut(s) 415, 698
HpyCH4IV ACGT 3 cut(s) 389, 681, 738
HpyCH4V TGCA 3 cut(s) 352, 785, 815
HpyF10VI GCNNNNNNNGC 9 cut(s) 219, 267, 288, 297, 485, 645, 654, 684, 812
HpyF3I CTNAG 5 cut(s) 166, 266, 394, 626, 672
HpySE526I ACGT 3 cut(s) 389, 681, 738
Hsp92II CATG 4 cut(s) 175, 664, 725, 734
HspAI GCGC 2 cut(s) 560, 648
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 727
KspI CCGCGG 1 cut(s) 259
Kzo9I GATC 1 cut(s) 727
LmnI GCTCC 5 cut(s) 150, 218, 227, 287, 542
Lsp1109I GCAGC 5 cut(s) 219, 222, 350, 364, 818
LweI GCATC 1 cut(s) 466
MaeII ACGT 3 cut(s) 389, 681, 738
MalI GATC 1 cut(s) 729
MboI GATC 1 cut(s) 727
MboII GAAGA 3 cut(s) 73, 238, 787
MluCI AATT 2 cut(s) 798, 851
MlyI GAGTC 5 cut(s) 137, 316, 326, 446, 537
MmeI TCCRAC 2 cut(s) 588, 598
MroNI GCCGGC 1 cut(s) 218
MseI TTAA 1 cut(s) 423
MspA1I CMGCKG 2 cut(s) 258, 534
MspI CCGG 5 cut(s) 113, 204, 219, 540, 633
MspR9I CCNGG 7 cut(s) 113, 114, 158, 204, 227, 541, 634
MvaI CCWGG 2 cut(s) 158, 227
MvnI CGCG 3 cut(s) 258, 386, 650
MwoI GCNNNNNNNGC 9 cut(s) 219, 267, 288, 297, 485, 645, 654, 684, 812
NaeI GCCGGC 1 cut(s) 220
NciI CCSGG 5 cut(s) 113, 114, 204, 541, 634
NdeII GATC 1 cut(s) 727
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 4 cut(s) 175, 664, 725, 734
NlaIV GGNNCC 5 cut(s) 223, 319, 499, 538, 643
NspI RCATGY 1 cut(s) 664
PaeR7I CTCGAG 1 cut(s) 356
PagI TCATGA 1 cut(s) 721
PciI ACATGT 1 cut(s) 660
PcsI WCGNNNNNNNCGW 2 cut(s) 750, 759
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 458
PflMI CCANNNNNTGG 1 cut(s) 651
PfoI TCCNGGA 1 cut(s) 539
PkrI GCNGC 8 cut(s) 209, 212, 257, 260, 354, 365, 536, 808
PleI GAGTC 5 cut(s) 136, 315, 326, 446, 536
PpsI GAGTC 5 cut(s) 136, 315, 326, 446, 536
PscI ACATGT 1 cut(s) 660
Psp6I CCWGG 2 cut(s) 156, 225
PspFI CCCAGC 1 cut(s) 96
PspGI CCWGG 2 cut(s) 156, 225
PspN4I GGNNCC 5 cut(s) 223, 319, 499, 538, 643
PspPI GGNCC 4 cut(s) 434, 498, 630, 642
PspXI VCTCGAGB 1 cut(s) 356
RsaI GTAC 3 cut(s) 377, 524, 583
RsaNI GTAC 3 cut(s) 376, 523, 582
SacII CCGCGG 1 cut(s) 259
SalI GTCGAC 1 cut(s) 439
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 8 cut(s) 208, 211, 256, 259, 353, 364, 535, 807
Sau3AI GATC 1 cut(s) 727
Sau96I GGNCC 4 cut(s) 434, 498, 630, 642
SchI GAGTC 5 cut(s) 137, 316, 326, 446, 537
ScrFI CCNGG 7 cut(s) 113, 114, 158, 204, 227, 541, 634
SfaNI GCATC 1 cut(s) 466
Sfr274I CTCGAG 1 cut(s) 356
Sfr303I CCGCGG 1 cut(s) 259
SgrBI CCGCGG 1 cut(s) 259
SinI GGWCC 3 cut(s) 498, 630, 642
SlaI CTCGAG 1 cut(s) 356
SmaI CCCGGG 1 cut(s) 114
SmlI CTYRAG 2 cut(s) 356, 770
SmoI CTYRAG 2 cut(s) 356, 770
Sse9I AATT 2 cut(s) 798, 851
StyD4I CCNGG 7 cut(s) 111, 112, 156, 202, 225, 539, 632
TaaI ACNGT 2 cut(s) 415, 698
TaiI ACGT 3 cut(s) 392, 684, 741
TaqI TCGA 4 cut(s) 131, 330, 357, 440
TasI AATT 2 cut(s) 798, 851
TauI GCSGC 3 cut(s) 258, 261, 537
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 2 cut(s) 293, 569
TseI GCWGC 5 cut(s) 207, 210, 352, 363, 806
TspDTI ATGAA 1 cut(s) 879
TspMI CCCGGG 1 cut(s) 112
TspRI CASTG 2 cut(s) 293, 569
Van91I CCANNNNNTGG 1 cut(s) 651
VpaK11BI GGWCC 3 cut(s) 498, 630, 642
XceI RCATGY 1 cut(s) 664
XhoI CTCGAG 1 cut(s) 356
XmaI CCCGGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.