FvH4_4g33800

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009865
Physical Location & Seq
Forward (+)
31880034 .. 31883414
3381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g33800.t1

Sequence Viewer

Length: 894 bp
ATGTCTCTAACTCAAAAGGCCACCGCAAGTTTCTCCGTGTTCGTTATTGTTACTCTCATCTGCTTCGCATCTCCGTCGTCCTCCGCAACCGACACGTTCATCTACGGCGGTTGCTCACAGCTCAAGTTCCTCCCCGGCTCGTCTTACGAGATGAAGCTCAACTCCATCCTGGCCTCCGTGGTCAACTCGGCCATGTTCACTACTTACAACAACTTCACCGTCCCCGGGTCGTCTGGCACTGCGGACACGCTCTACGGCGTGTTTCAGTGCCGCGGCGACCTCAGCGGCACTGACTGCGCGCAGTGCGTGGCGCGCGCAGTCAGCCAGCTCGGCACGCTCTGTCTCGACGCGTGCGGGGGCGCGTTGCAGCTTGACGGGTGCTTCGTCAAGTACGACAACGCCACTTTCTTGGGGGTGGAGGACAAGACGGTGGTGATGAAGAAGTGTGGACCGTCGATCGGGTATGACTCCGACGGGTTGACCAAGAGGGATGCTGTGCTGGCGTATCTAGGGACCAGCGACGGGGCCTACCGGCCGTTCAGGGTGAGTGGCGCCGGGAATGTCCAAGGTGTGGCGCAGTGCGTAGGGGACTTGAGTCCGAGCGAGTGCCAGGATTGTCTGTCCGACGCCGTAGGGCAGCTGAGGGCGAGCTGCGGGACCAGCGGCTGGGGGGACTTGTTCATGGCCAAGTGCTACGCGCGCTACTCGGAAGGTGGATATCACTCGCACGGCCATGATCACAGTGACGACAACGATGATGATGATGATGATCTTGATAGGACACTTGCAATACTGATTGGGATCATAGCAGCAGTTGCATTAATCGTCGTATTTCTTTCTTACTTCAGAAAATATTTGTGTGGAGATGACTGTGATGAAAAAGGTGGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

298

Amino Acids

31.36

Weight (kDa)

4.56

Isoelectric Point (pI)

29.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 38 - 133 1e-17 Salt stress response/antifungal
Stress-antifung PF01657 180 - 237 1.2e-09 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01660 AT2G01660 AT2G01660
fragaria_vesca FvH4_4g33800 FvH4_4g33800 FvH4_4g33800
malus_domestica MD04G1025700.v1.1 MD13G1029600.v1.1 MD16G1020400.v1.1
prunus_persica Prupe.1G331900_v2.0.a1
pyrus_communis pycom16g01830
rosa_chinensis RchiOBHm_Chr4g0443311
rosa_laevigata RLG00000005939
rosa_multiflora Rmu_ssc0000122.1_g000006
rosa_roxburghii Rroxscaffold_5G00383890
rosa_rugosa Rorug04G0345500
rosa_samantha Rh4AG400400 Rh4BG412000 Rh4CG427400 Rh4DG407400
rosa_wichuraiana Rw4G034540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 551
AccB7I CCANNNNNTGG 2 cut(s) 571, 666
AccII CGCG 8 cut(s) 273, 299, 313, 315, 350, 362, 698, 700
AclWI GGATC 1 cut(s) 809
AcoI YGGCCR 4 cut(s) 189, 533, 684, 730
AcuI CTGAAG 1 cut(s) 829
AcyI GRCGYC 2 cut(s) 552, 627
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 5 cut(s) 225, 458, 522, 571, 666
AflIII ACRYGT 2 cut(s) 93, 348
AjnI CCWGG 2 cut(s) 168, 609
AluBI AGCT 6 cut(s) 121, 157, 328, 370, 640, 651
AluI AGCT 6 cut(s) 121, 157, 328, 370, 640, 651
Alw26I GTCTC 2 cut(s) 9, 347
AlwI GGATC 1 cut(s) 809
AlwNI CAGNNNCTG 1 cut(s) 666
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 7 cut(s) 18, 171, 189, 525, 533, 684, 730
ApeKI GCWGC 4 cut(s) 367, 637, 651, 809
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AseI ATTAAT 1 cut(s) 821
AspS9I GGNCC 4 cut(s) 449, 513, 525, 657
AsuC2I CCSGG 4 cut(s) 135, 225, 226, 556
AsuHPI GGTGA 3 cut(s) 208, 445, 556
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 3 cut(s) 449, 513, 657
BalI TGGCCA 1 cut(s) 686
BanI GGYRCC 1 cut(s) 551
BbvCI CCTCAGC 2 cut(s) 281, 641
BbvI GCAGC 4 cut(s) 379, 638, 649, 821
BccI CCATC 1 cut(s) 173
BceAI ACGGC 5 cut(s) 121, 271, 520, 614, 745
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BciT130I CCWGG 2 cut(s) 170, 611
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 4 cut(s) 135, 225, 226, 556
BcoDI GTCTC 2 cut(s) 9, 347
BfaI CTAG 1 cut(s) 509
BfoI RGCGCY 1 cut(s) 555
BglI GCCNNNNNGGC 1 cut(s) 330
BisI GCNGC 8 cut(s) 271, 274, 286, 368, 638, 652, 664, 810
BlsI GCNGC 8 cut(s) 272, 275, 287, 369, 639, 653, 665, 811
Bme1390I CCNGG 6 cut(s) 135, 170, 225, 226, 556, 611
Bme18I GGWCC 3 cut(s) 449, 513, 657
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 4 cut(s) 449, 513, 525, 657
BmiI GGNNCC 4 cut(s) 514, 526, 553, 658
BmrFI CCNGG 6 cut(s) 135, 170, 225, 226, 556, 611
BmsI GCATC 2 cut(s) 77, 481
BoxI GACNNNNGTC 1 cut(s) 594
Bpu10I CCTNAGC 2 cut(s) 281, 641
BpuEI CTTGAG 2 cut(s) 107, 613
BpuMI CCSGG 4 cut(s) 135, 225, 226, 556
BsaBI GATNNNNATC 2 cut(s) 768, 800
BsaHI GRCGYC 2 cut(s) 552, 627
BsaJI CCNNGG 6 cut(s) 133, 177, 223, 224, 271, 565
Bsc4I CCNNNNNNNGG 5 cut(s) 225, 458, 522, 571, 666
Bse118I RCCGGY 1 cut(s) 531
Bse8I GATNNNNATC 2 cut(s) 768, 800
BseBI CCWGG 2 cut(s) 170, 611
BseDI CCNNGG 6 cut(s) 133, 177, 223, 224, 271, 565
BseGI GGATG 2 cut(s) 165, 496
BseJI GATNNNNATC 2 cut(s) 768, 800
BseLI CCNNNNNNNGG 5 cut(s) 225, 458, 522, 571, 666
BseMII CTCAG 2 cut(s) 295, 632
BsePI GCGCGC 4 cut(s) 297, 311, 313, 698
BseX3I CGGCCG 1 cut(s) 533
BseXI GCAGC 4 cut(s) 379, 638, 649, 821
BseYI CCCAGC 1 cut(s) 666
Bsh1236I CGCG 8 cut(s) 273, 299, 313, 315, 350, 362, 698, 700
Bsh1285I CGRYCG 2 cut(s) 459, 536
BshFI GGCC 7 cut(s) 20, 173, 191, 527, 535, 686, 732
BshNI GGYRCC 1 cut(s) 551
BsiEI CGRYCG 2 cut(s) 459, 536
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 4 cut(s) 135, 225, 532, 555
BslFI GGGAC 5 cut(s) 206, 526, 602, 670, 686
BslI CCNNNNNNNGG 5 cut(s) 225, 458, 522, 571, 666
BsmAI GTCTC 2 cut(s) 9, 347
BsmFI GGGAC 5 cut(s) 206, 526, 602, 670, 686
BsnI GGCC 7 cut(s) 20, 173, 191, 527, 535, 686, 732
BsoBI CYCGRG 1 cut(s) 224
Bsp143I GATC 4 cut(s) 456, 736, 769, 801
BspANI GGCC 7 cut(s) 20, 173, 191, 527, 535, 686, 732
BspCNI CTCAG 2 cut(s) 294, 633
BspFNI CGCG 8 cut(s) 273, 299, 313, 315, 350, 362, 698, 700
BspLI GGNNCC 4 cut(s) 514, 526, 553, 658
BspPI GGATC 1 cut(s) 809
BspT107I GGYRCC 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 531
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 6 cut(s) 133, 177, 223, 224, 271, 565
BssHII GCGCGC 4 cut(s) 297, 311, 313, 698
BssMI GATC 4 cut(s) 456, 736, 769, 801
BssNI GRCGYC 2 cut(s) 552, 627
BssT1I CCWWGG 1 cut(s) 565
Bst2UI CCWGG 2 cut(s) 170, 611
Bst4CI ACNGT 5 cut(s) 220, 430, 453, 743, 872
BstACI GRCGYC 2 cut(s) 552, 627
BstAPI GCANNNNNTGC 2 cut(s) 294, 815
BstC8I GCNNGC 9 cut(s) 299, 313, 315, 326, 335, 352, 501, 649, 700
BstDEI CTNAG 2 cut(s) 281, 641
BstDSI CCRYGG 2 cut(s) 177, 271
BstF5I GGATG 2 cut(s) 165, 496
BstFNI CGCG 8 cut(s) 273, 299, 313, 315, 350, 362, 698, 700
BstH2I RGCGCY 1 cut(s) 555
BstKTI GATC 4 cut(s) 459, 739, 772, 804
BstMAI GTCTC 2 cut(s) 9, 347
BstMBI GATC 4 cut(s) 456, 736, 769, 801
BstMCI CGRYCG 2 cut(s) 459, 536
BstNI CCWGG 2 cut(s) 170, 611
BstPAI GACNNNNGTC 1 cut(s) 594
BstSCI CCNGG 6 cut(s) 133, 168, 223, 224, 554, 609
BstUI CGCG 8 cut(s) 273, 299, 313, 315, 350, 362, 698, 700
BstV1I GCAGC 4 cut(s) 379, 638, 649, 821
BstXI CCANNNNNNTGG 1 cut(s) 409
BstZI CGGCCG 1 cut(s) 533
BsuRI GGCC 7 cut(s) 20, 173, 191, 527, 535, 686, 732
BtgI CCRYGG 2 cut(s) 177, 271
BtsCI GGATG 2 cut(s) 165, 496
BtsI GCAGTG 3 cut(s) 237, 308, 584
BtsIMutI CAGTG 6 cut(s) 237, 272, 288, 308, 584, 748
Cac8I GCNNGC 9 cut(s) 299, 313, 315, 326, 335, 352, 501, 649, 700
CaiI CAGNNNCTG 1 cut(s) 666
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 4 cut(s) 449, 513, 525, 657
Cfr42I CCGCGG 1 cut(s) 274
Cfr9I CCCGGG 1 cut(s) 224
CseI GACGC 2 cut(s) 356, 635
Csp6I GTAC 1 cut(s) 391
CviAII CATG 3 cut(s) 193, 682, 734
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 2 cut(s) 281, 641
DinI GGCGCC 1 cut(s) 553
DpnI GATC 4 cut(s) 458, 738, 771, 803
DpnII GATC 4 cut(s) 456, 736, 769, 801
EaeI YGGCCR 4 cut(s) 189, 533, 684, 730
EagI CGGCCG 1 cut(s) 533
EclXI CGGCCG 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 565
Eco32I GATATC 1 cut(s) 719
Eco47I GGWCC 3 cut(s) 449, 513, 657
Eco52I CGGCCG 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 829
Eco88I CYCGRG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 525
EcoRII CCWGG 2 cut(s) 168, 609
EcoRV GATATC 1 cut(s) 719
EcoT14I CCWWGG 1 cut(s) 565
EgeI GGCGCC 1 cut(s) 553
EheI GGCGCC 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 565
FaeI CATG 3 cut(s) 196, 685, 737
FaiI YATR 5 cut(s) 194, 465, 683, 735, 806
FaqI GGGAC 5 cut(s) 206, 526, 602, 670, 686
FatI CATG 3 cut(s) 192, 681, 733
FauI CCCGC 2 cut(s) 347, 647
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 8 cut(s) 271, 274, 286, 368, 638, 652, 664, 810
FokI GGATG 2 cut(s) 152, 503
Fsp4HI GCNGC 8 cut(s) 271, 274, 286, 368, 638, 652, 664, 810
FspBI CTAG 1 cut(s) 509
GluI GCNGC 8 cut(s) 271, 274, 286, 368, 638, 652, 664, 810
GsaI CCCAGC 1 cut(s) 670
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 7 cut(s) 20, 173, 191, 527, 535, 686, 732
HapII CCGG 4 cut(s) 135, 225, 532, 555
HgaI GACGC 2 cut(s) 356, 635
Hin1I GRCGYC 2 cut(s) 552, 627
Hin1II CATG 3 cut(s) 196, 685, 737
HincII GTYRAC 2 cut(s) 184, 480
HindII GTYRAC 2 cut(s) 184, 480
HinfI GANTC 2 cut(s) 467, 595
HpaII CCGG 4 cut(s) 135, 225, 532, 555
HphI GGTGA 3 cut(s) 208, 445, 556
Hpy166II GTNNAC 4 cut(s) 184, 198, 449, 480
Hpy188I TCNGA 5 cut(s) 472, 600, 625, 709, 848
Hpy188III TCNNGA 2 cut(s) 344, 773
Hpy8I GTNNAC 4 cut(s) 184, 198, 449, 480
Hpy99I CGWCG 7 cut(s) 79, 350, 457, 476, 524, 629, 830
HpyAV CCTTC 1 cut(s) 704
HpyCH4III ACNGT 5 cut(s) 220, 430, 453, 743, 872
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 3 cut(s) 367, 788, 818
HpyF3I CTNAG 2 cut(s) 281, 641
HpySE526I ACGT 1 cut(s) 95
Hsp92I GRCGYC 2 cut(s) 552, 627
Hsp92II CATG 3 cut(s) 196, 685, 737
KasI GGCGCC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 736
KspI CCGCGG 1 cut(s) 274
Kzo9I GATC 4 cut(s) 456, 736, 769, 801
Lsp1109I GCAGC 4 cut(s) 379, 638, 649, 821
LweI GCATC 2 cut(s) 77, 481
MaeI CTAG 1 cut(s) 509
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 49, 743
MalI GATC 4 cut(s) 458, 738, 771, 803
MboI GATC 4 cut(s) 456, 736, 769, 801
MboII GAAGA 1 cut(s) 451
MlsI TGGCCA 1 cut(s) 686
MluI ACGCGT 1 cut(s) 348
MluNI TGGCCA 1 cut(s) 686
Mly113I GGCGCC 1 cut(s) 552
MlyI GAGTC 2 cut(s) 461, 604
MmeI TCCRAC 2 cut(s) 495, 648
MnlI CCTC 7 cut(s) 91, 140, 184, 290, 412, 480, 636
Mox20I TGGCCA 1 cut(s) 686
MscI TGGCCA 1 cut(s) 686
MseI TTAA 1 cut(s) 821
MslI CAYNNNNRTG 1 cut(s) 732
Msp20I TGGCCA 1 cut(s) 686
MspA1I CMGCKG 4 cut(s) 273, 285, 640, 663
MspI CCGG 4 cut(s) 135, 225, 532, 555
MspR9I CCNGG 6 cut(s) 135, 170, 225, 226, 556, 611
MvaI CCWGG 2 cut(s) 170, 611
MvnI CGCG 8 cut(s) 273, 299, 313, 315, 350, 362, 698, 700
NarI GGCGCC 1 cut(s) 552
NciI CCSGG 4 cut(s) 135, 225, 226, 556
NdeII GATC 4 cut(s) 456, 736, 769, 801
NlaIII CATG 3 cut(s) 196, 685, 737
NlaIV GGNNCC 4 cut(s) 514, 526, 553, 658
NmeAIII GCCGAG 2 cut(s) 167, 309
NmuCI GTSAC 1 cut(s) 743
PauI GCGCGC 4 cut(s) 297, 311, 313, 698
PcsI WCGNNNNNNNCGW 2 cut(s) 381, 390
PflMI CCANNNNNTGG 2 cut(s) 571, 666
PkrI GCNGC 8 cut(s) 272, 275, 287, 369, 639, 653, 665, 811
Ple19I CGATCG 1 cut(s) 459
PleI GAGTC 2 cut(s) 461, 603
PluTI GGCGCC 1 cut(s) 555
PpsI GAGTC 2 cut(s) 461, 603
PshAI GACNNNNGTC 1 cut(s) 594
PshBI ATTAAT 1 cut(s) 821
Psp6I CCWGG 2 cut(s) 168, 609
PspFI CCCAGC 1 cut(s) 666
PspGI CCWGG 2 cut(s) 168, 609
PspN4I GGNNCC 4 cut(s) 514, 526, 553, 658
PspPI GGNCC 4 cut(s) 449, 513, 525, 657
PstNI CAGNNNCTG 1 cut(s) 666
PteI GCGCGC 4 cut(s) 297, 311, 313, 698
PvuI CGATCG 1 cut(s) 459
PvuII CAGCTG 1 cut(s) 640
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 732
SacII CCGCGG 1 cut(s) 274
SaqAI TTAA 1 cut(s) 821
SatI GCNGC 8 cut(s) 271, 274, 286, 368, 638, 652, 664, 810
Sau3AI GATC 4 cut(s) 456, 736, 769, 801
Sau96I GGNCC 4 cut(s) 449, 513, 525, 657
SchI GAGTC 2 cut(s) 461, 604
ScrFI CCNGG 6 cut(s) 135, 170, 225, 226, 556, 611
SfaNI GCATC 2 cut(s) 77, 481
SfoI GGCGCC 1 cut(s) 553
Sfr303I CCGCGG 1 cut(s) 274
SgrBI CCGCGG 1 cut(s) 274
SinI GGWCC 3 cut(s) 449, 513, 657
SmaI CCCGGG 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 2 cut(s) 122, 592
SmoI CTYRAG 2 cut(s) 122, 592
SspDI GGCGCC 1 cut(s) 551
SspI AATATT 1 cut(s) 854
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 6 cut(s) 133, 168, 223, 224, 554, 609
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 5 cut(s) 220, 430, 453, 743, 872
TaiI ACGT 1 cut(s) 98
TaqI TCGA 2 cut(s) 345, 455
TauI GCSGC 4 cut(s) 273, 276, 288, 666
Tru1I TTAA 1 cut(s) 821
Tru9I TTAA 1 cut(s) 821
TscAI CASTG 6 cut(s) 244, 272, 295, 308, 584, 748
TseFI GTSAC 1 cut(s) 743
TseI GCWGC 4 cut(s) 367, 637, 651, 809
Tsp45I GTSAC 1 cut(s) 743
TspDTI ATGAA 5 cut(s) 88, 167, 452, 670, 891
TspGWI ACGGA 3 cut(s) 25, 63, 166
TspMI CCCGGG 1 cut(s) 224
TspRI CASTG 6 cut(s) 244, 272, 295, 308, 584, 748
Van91I CCANNNNNTGG 2 cut(s) 571, 666
VpaK11BI GGWCC 3 cut(s) 449, 513, 657
VspI ATTAAT 1 cut(s) 821
XmaI CCCGGG 1 cut(s) 224
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.