Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0009865

Physical Location & Seq

Genomic Coordinates Forward (+)

61587692 .. 61591748

Gene Structure 4057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G034540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCTCTAACCAGAAATATCACTGCACCTTTCTTCGTCTTCTTTCTGGTCAACCTCTCCTTCTTCACATCCCCGTCGTCCTCCGCAACCGACACGTTCATCTACGGCGGTTGCTCCCAGCTCAAGTTCCCCCCGGGCTCGCCCTACGAGATGAAGTTCAACTCCATATTGGCCTCCGTGGTCAACTCGGCCATGTTCACTACTTACAACAACTTCACGGTCCCCGGGTCGTCCGGCACCGCGGACACGCTTTATGGCGTGTTTCAGTGCCGCGGCGACCTGAGCGGCAATGACTGTGCGCAGTGCGTGGCACGCGCCGTCAGCCAGCTCGGCACGCTCTGCCTGGACGCTTGCGGCGGCGCGTTGCAGCTGGACGGGTGCTTCGTCAAGTACGACAACGCCACGTTCTTAGGGGTGGAGGACAAGACGGTGGTGATGAAGAAGTGTGGGCCGTCGATTGGGTATGACTCGGAGGGGTTGACCAGGCGGGATGCTGTGCTGGCTTATCTCGGGACCAGTGATGGGGCCTACCGGCCGTTCAGGGTGAGTGGTGCCGGAAATGTCCAGGGTGTGGCCCAGTGCGTCGGGGACTTGAGTCCGAGCGAGTGCCAGGATTGTCTGTCCGACGCCGTAGGGCAGCTGAGGGCCGGGTGTGGGACCAGCACTTGGGGGGACTTGTTCTTGGCCAAGTGCTACGCGCGCTACTCGGAAGGTGGATATCACTCGCAAGGCCTTGATCACAATGACGACGACGACGACGACGATGATCTTGATAGGACGCTTGCAATACTGATTGGAATCATAGCAGCAGTTGCACTGCTCGTCGTATTTCTTTCTTACTTCAGAAAATATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

285

Amino Acids

30.45

Weight (kDa)

4.5

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	38 - 133	7.8e-18	Salt stress response/antifungal
Stress-antifung	PF01657	181 - 237	9.8e-10	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01660 AT2G01660 AT2G01660
fragaria_vesca	FvH4_4g33800 FvH4_4g33800 FvH4_4g33800
malus_domestica	MD04G1025700.v1.1 MD13G1029600.v1.1 MD16G1020400.v1.1
prunus_persica	Prupe.1G331900_v2.0.a1
pyrus_communis	pycom16g01830
rosa_chinensis	RchiOBHm_Chr4g0443311
rosa_laevigata	RLG00000005939
rosa_multiflora	Rmu_ssc0000122.1_g000006
rosa_roxburghii	Rroxscaffold_5G00383890
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh4AG400400 Rh4BG412000 Rh4CG427400 Rh4DG407400
rosa_wichuraiana	Rw4G034540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	856
Acc16I	TGCGCA	1 cut(s)	300
AccB1I	GGYRCC	2 cut(s)	236, 551
AccB7I	CCANNNNNTGG	2 cut(s)	571, 666
AccBSI	CCGCTC	1 cut(s)	285
AccII	CGCG	6 cut(s)	242, 273, 315, 362, 698, 700
AcoI	YGGCCR	3 cut(s)	189, 533, 684
AcuI	CTGAAG	1 cut(s)	826
AcyI	GRCGYC	1 cut(s)	627
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	5 cut(s)	458, 522, 571, 654, 666
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	4 cut(s)	342, 482, 564, 609
AluBI	AGCT	4 cut(s)	121, 328, 370, 640
AluI	AGCT	4 cut(s)	121, 328, 370, 640
Alw26I	GTCTC	1 cut(s)	9
Ama87I	CYCGRG	3 cut(s)	133, 224, 509
AoxI	GGCC	9 cut(s)	171, 189, 449, 525, 533, 573, 645, 684, 730
ApeKI	GCWGC	3 cut(s)	367, 637, 806
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AspLEI	GCGC	5 cut(s)	301, 317, 362, 700, 702
AspS9I	GGNCC	7 cut(s)	220, 449, 513, 525, 574, 645, 657
AsuC2I	CCSGG	5 cut(s)	134, 135, 225, 226, 649
AsuHPI	GGTGA	2 cut(s)	445, 556
AvaI	CYCGRG	3 cut(s)	133, 224, 509
AvaII	GGWCC	3 cut(s)	220, 513, 657
BalI	TGGCCA	1 cut(s)	686
BanI	GGYRCC	2 cut(s)	236, 551
BanII	GRGCYC	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	31
BbvCI	CCTCAGC	1 cut(s)	641
BbvI	GCAGC	3 cut(s)	379, 649, 818
BccI	CCATC	1 cut(s)	515
BceAI	ACGGC	5 cut(s)	121, 302, 436, 520, 614
BciT130I	CCWGG	4 cut(s)	344, 484, 566, 611
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	5 cut(s)	134, 135, 225, 226, 649
BcoDI	GTCTC	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	330
BisI	GCNGC	8 cut(s)	271, 274, 286, 355, 358, 368, 638, 807
BlsI	GCNGC	8 cut(s)	272, 275, 287, 356, 359, 369, 639, 808
Bme1390I	CCNGG	9 cut(s)	134, 135, 225, 226, 344, 484, 566, 611, 649
Bme18I	GGWCC	3 cut(s)	220, 513, 657
BmeT110I	CYCGRG	3 cut(s)	133, 224, 509
BmgT120I	GGNCC	7 cut(s)	220, 449, 513, 525, 574, 645, 657
BmiI	GGNNCC	6 cut(s)	222, 238, 514, 526, 553, 658
BmrFI	CCNGG	9 cut(s)	134, 135, 225, 226, 344, 484, 566, 611, 649
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	1 cut(s)	481
BmuI	ACTGGG	1 cut(s)	571
BoxI	GACNNNNGTC	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	31
Bpu10I	CCTNAGC	2 cut(s)	281, 641
BpuEI	CTTGAG	2 cut(s)	107, 613
BpuMI	CCSGG	5 cut(s)	134, 135, 225, 226, 649
BsaBI	GATNNNNATC	1 cut(s)	797
BsaHI	GRCGYC	1 cut(s)	627
BsaJI	CCNNGG	8 cut(s)	132, 133, 177, 223, 224, 240, 271, 565
Bsc4I	CCNNNNNNNGG	5 cut(s)	458, 522, 571, 654, 666
Bse118I	RCCGGY	1 cut(s)	531
Bse1I	ACTGG	2 cut(s)	516, 577
Bse3DI	GCAATG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	797
BseBI	CCWGG	4 cut(s)	344, 484, 566, 611
BseDI	CCNNGG	8 cut(s)	132, 133, 177, 223, 224, 240, 271, 565
BseGI	GGATG	2 cut(s)	68, 496
BseJI	GATNNNNATC	1 cut(s)	797
BseLI	CCNNNNNNNGG	5 cut(s)	458, 522, 571, 654, 666
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	272, 632
BseNI	ACTGG	2 cut(s)	516, 577
BsePI	GCGCGC	1 cut(s)	698
BseX3I	CGGCCG	1 cut(s)	533
BseXI	GCAGC	3 cut(s)	379, 649, 818
BseYI	CCCAGC	1 cut(s)	117
BsgI	GTGCAG	1 cut(s)	9
Bsh1236I	CGCG	6 cut(s)	242, 273, 315, 362, 698, 700
Bsh1285I	CGRYCG	1 cut(s)	536
BshFI	GGCC	9 cut(s)	173, 191, 451, 527, 535, 575, 647, 686, 732
BshNI	GGYRCC	2 cut(s)	236, 551
BsiEI	CGRYCG	1 cut(s)	536
BsiHKCI	CYCGRG	3 cut(s)	133, 224, 509
BsiSI	CCGG	6 cut(s)	134, 225, 234, 532, 555, 648
BslFI	GGGAC	5 cut(s)	206, 526, 602, 670, 686
BslI	CCNNNNNNNGG	5 cut(s)	458, 522, 571, 654, 666
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	5 cut(s)	206, 526, 602, 670, 686
BsnI	GGCC	9 cut(s)	173, 191, 451, 527, 535, 575, 647, 686, 732
BsoBI	CYCGRG	3 cut(s)	133, 224, 509
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	736, 766
BspANI	GGCC	9 cut(s)	173, 191, 451, 527, 535, 575, 647, 686, 732
BspCNI	CTCAG	2 cut(s)	273, 633
BspFNI	CGCG	6 cut(s)	242, 273, 315, 362, 698, 700
BspLI	GGNNCC	6 cut(s)	222, 238, 514, 526, 553, 658
BspT107I	GGYRCC	2 cut(s)	236, 551
BsrBI	CCGCTC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	516, 577
BssAI	RCCGGY	1 cut(s)	531
BssECI	CCNNGG	8 cut(s)	132, 133, 177, 223, 224, 240, 271, 565
BssHII	GCGCGC	1 cut(s)	698
BssMI	GATC	2 cut(s)	736, 766
BssNI	GRCGYC	1 cut(s)	627
Bst2UI	CCWGG	4 cut(s)	344, 484, 566, 611
Bst4CI	ACNGT	3 cut(s)	220, 296, 430
BstACI	GRCGYC	1 cut(s)	627
BstAPI	GCANNNNNTGC	2 cut(s)	339, 812
BstC8I	GCNNGC	8 cut(s)	140, 313, 326, 335, 352, 501, 700, 783
BstDEI	CTNAG	3 cut(s)	281, 409, 641
BstDSI	CCRYGG	3 cut(s)	177, 240, 271
BstF5I	GGATG	2 cut(s)	68, 496
BstFNI	CGCG	6 cut(s)	242, 273, 315, 362, 698, 700
BstHHI	GCGC	5 cut(s)	301, 317, 362, 700, 702
BstKTI	GATC	2 cut(s)	739, 769
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	736, 766
BstMCI	CGRYCG	1 cut(s)	536
BstMWI	GCNNNNNNNGC	9 cut(s)	282, 312, 321, 330, 334, 339, 500, 699, 812
BstNI	CCWGG	4 cut(s)	344, 484, 566, 611
BstPAI	GACNNNNGTC	1 cut(s)	594
BstSCI	CCNGG	9 cut(s)	132, 133, 223, 224, 342, 482, 564, 609, 647
BstUI	CGCG	6 cut(s)	242, 273, 315, 362, 698, 700
BstV1I	GCAGC	3 cut(s)	379, 649, 818
BstV2I	GAAGAC	1 cut(s)	31
BstZI	CGGCCG	1 cut(s)	533
BsuRI	GGCC	9 cut(s)	173, 191, 451, 527, 535, 575, 647, 686, 732
BtgI	CCRYGG	3 cut(s)	177, 240, 271
BtsCI	GGATG	2 cut(s)	68, 496
BtsI	GCAGTG	3 cut(s)	21, 308, 815
BtsIMutI	CAGTG	6 cut(s)	21, 272, 308, 523, 584, 815
Cac8I	GCNNGC	8 cut(s)	140, 313, 326, 335, 352, 501, 700, 783
CfoI	GCGC	5 cut(s)	301, 317, 362, 700, 702
Cfr10I	RCCGGY	1 cut(s)	531
Cfr13I	GGNCC	7 cut(s)	220, 449, 513, 525, 574, 645, 657
Cfr42I	CCGCGG	2 cut(s)	243, 274
Cfr9I	CCCGGG	2 cut(s)	133, 224
CseI	GACGC	4 cut(s)	356, 571, 635, 787
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	3 cut(s)	281, 409, 641
DpnI	GATC	2 cut(s)	738, 768
DpnII	GATC	2 cut(s)	736, 766
EaeI	YGGCCR	3 cut(s)	189, 533, 684
EagI	CGGCCG	1 cut(s)	533
EclXI	CGGCCG	1 cut(s)	533
Eco147I	AGGCCT	1 cut(s)	732
Eco24I	GRGCYC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	719
Eco47I	GGWCC	3 cut(s)	220, 513, 657
Eco52I	CGGCCG	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	826
Eco88I	CYCGRG	3 cut(s)	133, 224, 509
EcoO109I	RGGNCCY	1 cut(s)	525
EcoRII	CCWGG	4 cut(s)	342, 482, 564, 609
EcoRV	GATATC	1 cut(s)	719
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	1 cut(s)	196
FaiI	YATR	6 cut(s)	167, 194, 255, 465, 803, 856
FaqI	GGGAC	5 cut(s)	206, 526, 602, 670, 686
FatI	CATG	1 cut(s)	192
FauI	CCCGC	1 cut(s)	480
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	8 cut(s)	271, 274, 286, 355, 358, 368, 638, 807
FokI	GGATG	2 cut(s)	55, 503
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	8 cut(s)	271, 274, 286, 355, 358, 368, 638, 807
FspI	TGCGCA	1 cut(s)	300
GlaI	GCGC	5 cut(s)	300, 316, 361, 699, 701
GluI	GCNGC	8 cut(s)	271, 274, 286, 355, 358, 368, 638, 807
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	9 cut(s)	173, 191, 451, 527, 535, 575, 647, 686, 732
HapII	CCGG	6 cut(s)	134, 225, 234, 532, 555, 648
HgaI	GACGC	4 cut(s)	356, 571, 635, 787
HhaI	GCGC	5 cut(s)	301, 317, 362, 700, 702
Hin1I	GRCGYC	1 cut(s)	627
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	5 cut(s)	299, 315, 360, 698, 700
HinP1I	GCGC	5 cut(s)	299, 315, 360, 698, 700
HincII	GTYRAC	3 cut(s)	52, 184, 480
HindII	GTYRAC	3 cut(s)	52, 184, 480
HinfI	GANTC	3 cut(s)	467, 595, 798
HpaII	CCGG	6 cut(s)	134, 225, 234, 532, 555, 648
HphI	GGTGA	2 cut(s)	445, 556
Hpy166II	GTNNAC	4 cut(s)	52, 184, 198, 480
Hpy188I	TCNGA	5 cut(s)	472, 600, 625, 709, 845
Hpy188III	TCNNGA	2 cut(s)	511, 770
Hpy8I	GTNNAC	4 cut(s)	52, 184, 198, 480
HpyAV	CCTTC	2 cut(s)	70, 704
HpyCH4III	ACNGT	3 cut(s)	220, 296, 430
HpyCH4IV	ACGT	2 cut(s)	95, 404
HpyCH4V	TGCA	4 cut(s)	26, 367, 785, 815
HpyF10VI	GCNNNNNNNGC	9 cut(s)	282, 312, 321, 330, 334, 339, 500, 699, 812
HpyF3I	CTNAG	3 cut(s)	281, 409, 641
HpySE526I	ACGT	2 cut(s)	95, 404
Hsp92I	GRCGYC	1 cut(s)	627
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	5 cut(s)	299, 315, 360, 698, 700
Ksp22I	TGATCA	1 cut(s)	736
KspI	CCGCGG	2 cut(s)	243, 274
Kzo9I	GATC	2 cut(s)	736, 766
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	3 cut(s)	379, 649, 818
LweI	GCATC	1 cut(s)	481
MaeII	ACGT	2 cut(s)	95, 404
MalI	GATC	2 cut(s)	738, 768
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	2 cut(s)	736, 766
MboII	GAAGA	4 cut(s)	25, 31, 55, 451
MhlI	GDGCHC	1 cut(s)	140
MlsI	TGGCCA	1 cut(s)	686
MluNI	TGGCCA	1 cut(s)	686
MlyI	GAGTC	2 cut(s)	461, 604
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	6 cut(s)	65, 91, 184, 412, 466, 636
Mox20I	TGGCCA	1 cut(s)	686
MscI	TGGCCA	1 cut(s)	686
Msp20I	TGGCCA	1 cut(s)	686
MspA1I	CMGCKG	4 cut(s)	242, 273, 370, 640
MspI	CCGG	6 cut(s)	134, 225, 234, 532, 555, 648
MspR9I	CCNGG	9 cut(s)	134, 135, 225, 226, 344, 484, 566, 611, 649
MvaI	CCWGG	4 cut(s)	344, 484, 566, 611
MvnI	CGCG	6 cut(s)	242, 273, 315, 362, 698, 700
MwoI	GCNNNNNNNGC	9 cut(s)	282, 312, 321, 330, 334, 339, 500, 699, 812
NciI	CCSGG	5 cut(s)	134, 135, 225, 226, 649
NdeII	GATC	2 cut(s)	736, 766
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	6 cut(s)	222, 238, 514, 526, 553, 658
NmeAIII	GCCGAG	2 cut(s)	167, 309
NsbI	TGCGCA	1 cut(s)	300
PauI	GCGCGC	1 cut(s)	698
PceI	AGGCCT	1 cut(s)	732
PcsI	WCGNNNNNNNCGW	5 cut(s)	381, 390, 753, 756, 759
PfeI	GAWTC	1 cut(s)	798
PflMI	CCANNNNNTGG	2 cut(s)	571, 666
PkrI	GCNGC	8 cut(s)	272, 275, 287, 356, 359, 369, 639, 808
PleI	GAGTC	2 cut(s)	461, 603
PpsI	GAGTC	2 cut(s)	461, 603
PshAI	GACNNNNGTC	1 cut(s)	594
PsiI	TTATAA	1 cut(s)	856
Psp6I	CCWGG	4 cut(s)	342, 482, 564, 609
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	4 cut(s)	342, 482, 564, 609
PspN4I	GGNNCC	6 cut(s)	222, 238, 514, 526, 553, 658
PspPI	GGNCC	7 cut(s)	220, 449, 513, 525, 574, 645, 657
PteI	GCGCGC	1 cut(s)	698
PvuII	CAGCTG	2 cut(s)	370, 640
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SacII	CCGCGG	2 cut(s)	243, 274
SatI	GCNGC	8 cut(s)	271, 274, 286, 355, 358, 368, 638, 807
Sau3AI	GATC	2 cut(s)	736, 766
Sau96I	GGNCC	7 cut(s)	220, 449, 513, 525, 574, 645, 657
SchI	GAGTC	2 cut(s)	461, 604
ScrFI	CCNGG	9 cut(s)	134, 135, 225, 226, 344, 484, 566, 611, 649
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	481
Sfr303I	CCGCGG	2 cut(s)	243, 274
SgrBI	CCGCGG	2 cut(s)	243, 274
SinI	GGWCC	3 cut(s)	220, 513, 657
SmaI	CCCGGG	2 cut(s)	135, 226
SmlI	CTYRAG	2 cut(s)	122, 592
SmoI	CTYRAG	2 cut(s)	122, 592
SseBI	AGGCCT	1 cut(s)	732
SspI	AATATT	1 cut(s)	851
StuI	AGGCCT	1 cut(s)	732
StyD4I	CCNGG	9 cut(s)	132, 133, 223, 224, 342, 482, 564, 609, 647
TaaI	ACNGT	3 cut(s)	220, 296, 430
TaiI	ACGT	2 cut(s)	98, 407
TaqI	TCGA	1 cut(s)	455
TauI	GCSGC	5 cut(s)	273, 276, 288, 357, 360
TfiI	GAWTC	1 cut(s)	798
TscAI	CASTG	6 cut(s)	28, 272, 308, 523, 584, 822
TseI	GCWGC	3 cut(s)	367, 637, 806
TspDTI	ATGAA	3 cut(s)	88, 167, 452
TspGWI	ACGGA	1 cut(s)	166
TspMI	CCCGGG	2 cut(s)	133, 224
TspRI	CASTG	6 cut(s)	28, 272, 308, 523, 584, 822
Van91I	CCANNNNNTGG	2 cut(s)	571, 666
VpaK11BI	GGWCC	3 cut(s)	220, 513, 657
XmaI	CCCGGG	2 cut(s)	133, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.