Rmu_ssc0000122.1_g000006

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000122.1
OG0009865
Physical Location & Seq
Forward (+)
24722 .. 26953
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000122.1_g000006.1.cds

Sequence Viewer

Length: 897 bp
atgtctctaaccagaaatatcactgcacctttcttcgtcttctttctggtcaacctctccttcttcacatccccgtcgtcctccgcaaccgacacgttcatctacggcggttgctcccagctcaagttccccccgggctcgccctacgagatgaagctcaactccatattggcctccgtggtcaacttggccatgtccactacttacaacaacttcacggtccccgggtcgtccggcaccgcggacacgctttatggcgtgtttcagtgccgcggcgacctgagcggcaatgactgtgcgcagtgcgtgacacgcgcagtcagccagctcggcacgctctgcctggacgcgtgcggcggcgcgttgcagctggacgggtgcttcgtcaagtacgacaacgccacgttcttaggggtggaggacaagacggtggtgatgaagaagtgtgggccgtcgattgggtatgactcggaggggttgaccaggcgggattctgtgctggcttatctcgggaccagtgatgaggcctaccggccgttcagggtgagtggtgccggaaatgtccagggtgtggcccagtgcgtcggggacttgagtccgagcgagtgccaggattgtctgtccgacgccgtagggcagctgagggccgggtgtgggaccagcacttggggggacttgttcttggccaagtgctacgcgcgctactcggaaggtggatatcactcgcaaggccttgatcacaatgacgacgacgacgacgacgacgatgatcttgataggacgcttgcaatactgattggaatcatagcagcagttgcactgctcgtcgtatttctttcttacttcagaaaatatttgtgtggagatgagtgtggagatgaaaaaggtggcaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

298

Amino Acids

31.79

Weight (kDa)

4.4

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01660 AT2G01660 AT2G01660
fragaria_vesca FvH4_4g33800 FvH4_4g33800 FvH4_4g33800
malus_domestica MD04G1025700.v1.1 MD13G1029600.v1.1 MD16G1020400.v1.1
prunus_persica Prupe.1G331900_v2.0.a1
pyrus_communis pycom16g01830
rosa_chinensis RchiOBHm_Chr4g0443311
rosa_laevigata RLG00000005939
rosa_multiflora Rmu_ssc0000122.1_g000006
rosa_roxburghii Rroxscaffold_5G00383890
rosa_rugosa Rorug04G0345500
rosa_samantha Rh4AG400400 Rh4BG412000 Rh4CG427400 Rh4DG407400
rosa_wichuraiana Rw4G034540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 300
AccB1I GGYRCC 2 cut(s) 236, 551
AccB7I CCANNNNNTGG 2 cut(s) 571, 666
AccBSI CCGCTC 1 cut(s) 285
AccII CGCG 7 cut(s) 242, 273, 315, 350, 362, 698, 700
AcoI YGGCCR 3 cut(s) 189, 533, 684
AcuI CTGAAG 1 cut(s) 829
AcyI GRCGYC 1 cut(s) 627
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 4 cut(s) 458, 571, 654, 666
AflIII ACRYGT 2 cut(s) 93, 348
AjnI CCWGG 4 cut(s) 342, 482, 564, 609
AluBI AGCT 5 cut(s) 121, 157, 328, 370, 640
AluI AGCT 5 cut(s) 121, 157, 328, 370, 640
Alw26I GTCTC 1 cut(s) 9
Ama87I CYCGRG 3 cut(s) 133, 224, 509
AoxI GGCC 9 cut(s) 171, 189, 449, 525, 533, 573, 645, 684, 730
ApeKI GCWGC 3 cut(s) 367, 637, 809
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AspLEI GCGC 5 cut(s) 301, 317, 362, 700, 702
AspS9I GGNCC 6 cut(s) 220, 449, 513, 574, 645, 657
AsuC2I CCSGG 5 cut(s) 134, 135, 225, 226, 649
AsuHPI GGTGA 2 cut(s) 445, 556
AvaI CYCGRG 3 cut(s) 133, 224, 509
AvaII GGWCC 3 cut(s) 220, 513, 657
BalI TGGCCA 2 cut(s) 191, 686
BanI GGYRCC 2 cut(s) 236, 551
BanII GRGCYC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 31
BbvCI CCTCAGC 1 cut(s) 641
BbvI GCAGC 3 cut(s) 379, 649, 821
BceAI ACGGC 4 cut(s) 121, 436, 520, 614
BciT130I CCWGG 4 cut(s) 344, 484, 566, 611
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 5 cut(s) 134, 135, 225, 226, 649
BcoDI GTCTC 1 cut(s) 9
BglI GCCNNNNNGGC 1 cut(s) 330
BisI GCNGC 8 cut(s) 271, 274, 286, 355, 358, 368, 638, 810
BlsI GCNGC 8 cut(s) 272, 275, 287, 356, 359, 369, 639, 811
Bme1390I CCNGG 9 cut(s) 134, 135, 225, 226, 344, 484, 566, 611, 649
Bme18I GGWCC 3 cut(s) 220, 513, 657
BmeT110I CYCGRG 3 cut(s) 133, 224, 509
BmgT120I GGNCC 6 cut(s) 220, 449, 513, 574, 645, 657
BmiI GGNNCC 5 cut(s) 222, 238, 514, 553, 658
BmrFI CCNGG 9 cut(s) 134, 135, 225, 226, 344, 484, 566, 611, 649
BmrI ACTGGG 1 cut(s) 571
BmuI ACTGGG 1 cut(s) 571
BoxI GACNNNNGTC 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 31
Bpu10I CCTNAGC 2 cut(s) 281, 641
BpuEI CTTGAG 2 cut(s) 107, 613
BpuMI CCSGG 5 cut(s) 134, 135, 225, 226, 649
BsaBI GATNNNNATC 1 cut(s) 800
BsaHI GRCGYC 1 cut(s) 627
BsaJI CCNNGG 8 cut(s) 132, 133, 177, 223, 224, 240, 271, 565
Bsc4I CCNNNNNNNGG 4 cut(s) 458, 571, 654, 666
Bse118I RCCGGY 1 cut(s) 531
Bse1I ACTGG 2 cut(s) 516, 577
Bse3DI GCAATG 1 cut(s) 295
Bse8I GATNNNNATC 1 cut(s) 800
BseBI CCWGG 4 cut(s) 344, 484, 566, 611
BseDI CCNNGG 8 cut(s) 132, 133, 177, 223, 224, 240, 271, 565
BseGI GGATG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 800
BseLI CCNNNNNNNGG 4 cut(s) 458, 571, 654, 666
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 2 cut(s) 272, 632
BseNI ACTGG 2 cut(s) 516, 577
BsePI GCGCGC 1 cut(s) 698
BseX3I CGGCCG 1 cut(s) 533
BseXI GCAGC 3 cut(s) 379, 649, 821
BseYI CCCAGC 1 cut(s) 117
BsgI GTGCAG 1 cut(s) 9
Bsh1236I CGCG 7 cut(s) 242, 273, 315, 350, 362, 698, 700
Bsh1285I CGRYCG 1 cut(s) 536
BshFI GGCC 9 cut(s) 173, 191, 451, 527, 535, 575, 647, 686, 732
BshNI GGYRCC 2 cut(s) 236, 551
BsiEI CGRYCG 1 cut(s) 536
BsiHKCI CYCGRG 3 cut(s) 133, 224, 509
BsiSI CCGG 6 cut(s) 134, 225, 234, 532, 555, 648
BslFI GGGAC 5 cut(s) 206, 526, 602, 670, 686
BslI CCNNNNNNNGG 4 cut(s) 458, 571, 654, 666
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 5 cut(s) 206, 526, 602, 670, 686
BsnI GGCC 9 cut(s) 173, 191, 451, 527, 535, 575, 647, 686, 732
BsoBI CYCGRG 3 cut(s) 133, 224, 509
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 736, 769
BspANI GGCC 9 cut(s) 173, 191, 451, 527, 535, 575, 647, 686, 732
BspCNI CTCAG 2 cut(s) 273, 633
BspFNI CGCG 7 cut(s) 242, 273, 315, 350, 362, 698, 700
BspLI GGNNCC 5 cut(s) 222, 238, 514, 553, 658
BspT107I GGYRCC 2 cut(s) 236, 551
BsrBI CCGCTC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 531
BsrI ACTGG 2 cut(s) 516, 577
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 8 cut(s) 132, 133, 177, 223, 224, 240, 271, 565
BssHII GCGCGC 1 cut(s) 698
BssMI GATC 2 cut(s) 736, 769
BssNI GRCGYC 1 cut(s) 627
Bst2UI CCWGG 4 cut(s) 344, 484, 566, 611
Bst4CI ACNGT 3 cut(s) 220, 296, 430
BstACI GRCGYC 1 cut(s) 627
BstAPI GCANNNNNTGC 2 cut(s) 339, 815
BstC8I GCNNGC 7 cut(s) 140, 326, 335, 352, 501, 700, 786
BstDEI CTNAG 3 cut(s) 281, 409, 641
BstDSI CCRYGG 3 cut(s) 177, 240, 271
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 7 cut(s) 242, 273, 315, 350, 362, 698, 700
BstHHI GCGC 5 cut(s) 301, 317, 362, 700, 702
BstKTI GATC 2 cut(s) 739, 772
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 736, 769
BstMCI CGRYCG 1 cut(s) 536
BstMWI GCNNNNNNNGC 8 cut(s) 282, 312, 321, 330, 334, 339, 699, 815
BstNI CCWGG 4 cut(s) 344, 484, 566, 611
BstPAI GACNNNNGTC 1 cut(s) 594
BstSCI CCNGG 9 cut(s) 132, 133, 223, 224, 342, 482, 564, 609, 647
BstUI CGCG 7 cut(s) 242, 273, 315, 350, 362, 698, 700
BstV1I GCAGC 3 cut(s) 379, 649, 821
BstV2I GAAGAC 1 cut(s) 31
BstZI CGGCCG 1 cut(s) 533
BsuRI GGCC 9 cut(s) 173, 191, 451, 527, 535, 575, 647, 686, 732
BtgI CCRYGG 3 cut(s) 177, 240, 271
BtsCI GGATG 1 cut(s) 68
BtsI GCAGTG 3 cut(s) 21, 308, 818
BtsIMutI CAGTG 6 cut(s) 21, 272, 308, 523, 584, 818
Cac8I GCNNGC 7 cut(s) 140, 326, 335, 352, 501, 700, 786
CfoI GCGC 5 cut(s) 301, 317, 362, 700, 702
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 6 cut(s) 220, 449, 513, 574, 645, 657
Cfr42I CCGCGG 2 cut(s) 243, 274
Cfr9I CCCGGG 2 cut(s) 133, 224
CseI GACGC 4 cut(s) 356, 571, 635, 790
Csp6I GTAC 1 cut(s) 391
CviAII CATG 1 cut(s) 193
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 3 cut(s) 281, 409, 641
DpnI GATC 2 cut(s) 738, 771
DpnII GATC 2 cut(s) 736, 769
EaeI YGGCCR 3 cut(s) 189, 533, 684
EagI CGGCCG 1 cut(s) 533
EclXI CGGCCG 1 cut(s) 533
Eco147I AGGCCT 2 cut(s) 527, 732
Eco24I GRGCYC 1 cut(s) 140
Eco32I GATATC 1 cut(s) 719
Eco47I GGWCC 3 cut(s) 220, 513, 657
Eco52I CGGCCG 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 829
Eco88I CYCGRG 3 cut(s) 133, 224, 509
EcoRII CCWGG 4 cut(s) 342, 482, 564, 609
EcoRV GATATC 1 cut(s) 719
EcoT38I GRGCYC 1 cut(s) 140
FaeI CATG 1 cut(s) 196
FaiI YATR 5 cut(s) 167, 194, 255, 465, 806
FaqI GGGAC 5 cut(s) 206, 526, 602, 670, 686
FatI CATG 1 cut(s) 192
FauI CCCGC 1 cut(s) 480
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 8 cut(s) 271, 274, 286, 355, 358, 368, 638, 810
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 8 cut(s) 271, 274, 286, 355, 358, 368, 638, 810
FspI TGCGCA 1 cut(s) 300
GlaI GCGC 5 cut(s) 300, 316, 361, 699, 701
GluI GCNGC 8 cut(s) 271, 274, 286, 355, 358, 368, 638, 810
GsaI CCCAGC 1 cut(s) 121
HaeIII GGCC 9 cut(s) 173, 191, 451, 527, 535, 575, 647, 686, 732
HapII CCGG 6 cut(s) 134, 225, 234, 532, 555, 648
HgaI GACGC 4 cut(s) 356, 571, 635, 790
HhaI GCGC 5 cut(s) 301, 317, 362, 700, 702
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 5 cut(s) 299, 315, 360, 698, 700
HinP1I GCGC 5 cut(s) 299, 315, 360, 698, 700
HincII GTYRAC 3 cut(s) 52, 184, 480
HindII GTYRAC 3 cut(s) 52, 184, 480
HinfI GANTC 4 cut(s) 467, 491, 595, 801
HpaII CCGG 6 cut(s) 134, 225, 234, 532, 555, 648
HphI GGTGA 2 cut(s) 445, 556
Hpy166II GTNNAC 4 cut(s) 52, 184, 198, 480
Hpy188I TCNGA 5 cut(s) 472, 600, 625, 709, 848
Hpy188III TCNNGA 2 cut(s) 511, 773
Hpy8I GTNNAC 4 cut(s) 52, 184, 198, 480
HpyAV CCTTC 2 cut(s) 70, 704
HpyCH4III ACNGT 3 cut(s) 220, 296, 430
HpyCH4IV ACGT 2 cut(s) 95, 404
HpyCH4V TGCA 4 cut(s) 26, 367, 788, 818
HpyF10VI GCNNNNNNNGC 8 cut(s) 282, 312, 321, 330, 334, 339, 699, 815
HpyF3I CTNAG 3 cut(s) 281, 409, 641
HpySE526I ACGT 2 cut(s) 95, 404
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 5 cut(s) 299, 315, 360, 698, 700
Ksp22I TGATCA 1 cut(s) 736
KspI CCGCGG 2 cut(s) 243, 274
Kzo9I GATC 2 cut(s) 736, 769
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 3 cut(s) 379, 649, 821
MaeII ACGT 2 cut(s) 95, 404
MaeIII GTNAC 1 cut(s) 307
MalI GATC 2 cut(s) 738, 771
MbiI CCGCTC 1 cut(s) 285
MboI GATC 2 cut(s) 736, 769
MboII GAAGA 4 cut(s) 25, 31, 55, 451
MhlI GDGCHC 1 cut(s) 140
MlsI TGGCCA 2 cut(s) 191, 686
MluI ACGCGT 1 cut(s) 348
MluNI TGGCCA 2 cut(s) 191, 686
MlyI GAGTC 2 cut(s) 461, 604
MmeI TCCRAC 1 cut(s) 648
MnlI CCTC 7 cut(s) 65, 91, 184, 412, 466, 517, 636
Mox20I TGGCCA 2 cut(s) 191, 686
MscI TGGCCA 2 cut(s) 191, 686
Msp20I TGGCCA 2 cut(s) 191, 686
MspA1I CMGCKG 4 cut(s) 242, 273, 370, 640
MspI CCGG 6 cut(s) 134, 225, 234, 532, 555, 648
MspR9I CCNGG 9 cut(s) 134, 135, 225, 226, 344, 484, 566, 611, 649
MvaI CCWGG 4 cut(s) 344, 484, 566, 611
MvnI CGCG 7 cut(s) 242, 273, 315, 350, 362, 698, 700
MwoI GCNNNNNNNGC 8 cut(s) 282, 312, 321, 330, 334, 339, 699, 815
NciI CCSGG 5 cut(s) 134, 135, 225, 226, 649
NdeII GATC 2 cut(s) 736, 769
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 5 cut(s) 222, 238, 514, 553, 658
NmeAIII GCCGAG 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 307
NsbI TGCGCA 1 cut(s) 300
PauI GCGCGC 1 cut(s) 698
PceI AGGCCT 2 cut(s) 527, 732
PcsI WCGNNNNNNNCGW 6 cut(s) 381, 390, 753, 756, 759, 762
PfeI GAWTC 2 cut(s) 491, 801
PflMI CCANNNNNTGG 2 cut(s) 571, 666
PkrI GCNGC 8 cut(s) 272, 275, 287, 356, 359, 369, 639, 811
PleI GAGTC 2 cut(s) 461, 603
PpsI GAGTC 2 cut(s) 461, 603
PshAI GACNNNNGTC 1 cut(s) 594
Psp6I CCWGG 4 cut(s) 342, 482, 564, 609
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 4 cut(s) 342, 482, 564, 609
PspN4I GGNNCC 5 cut(s) 222, 238, 514, 553, 658
PspPI GGNCC 6 cut(s) 220, 449, 513, 574, 645, 657
PteI GCGCGC 1 cut(s) 698
PvuII CAGCTG 2 cut(s) 370, 640
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SacII CCGCGG 2 cut(s) 243, 274
SatI GCNGC 8 cut(s) 271, 274, 286, 355, 358, 368, 638, 810
Sau3AI GATC 2 cut(s) 736, 769
Sau96I GGNCC 6 cut(s) 220, 449, 513, 574, 645, 657
SchI GAGTC 2 cut(s) 461, 604
ScrFI CCNGG 9 cut(s) 134, 135, 225, 226, 344, 484, 566, 611, 649
SduI GDGCHC 1 cut(s) 140
Sfr303I CCGCGG 2 cut(s) 243, 274
SgrBI CCGCGG 2 cut(s) 243, 274
SinI GGWCC 3 cut(s) 220, 513, 657
SmaI CCCGGG 2 cut(s) 135, 226
SmlI CTYRAG 2 cut(s) 122, 592
SmoI CTYRAG 2 cut(s) 122, 592
SseBI AGGCCT 2 cut(s) 527, 732
SspI AATATT 1 cut(s) 854
StuI AGGCCT 2 cut(s) 527, 732
StyD4I CCNGG 9 cut(s) 132, 133, 223, 224, 342, 482, 564, 609, 647
TaaI ACNGT 3 cut(s) 220, 296, 430
TaiI ACGT 2 cut(s) 98, 407
TaqI TCGA 1 cut(s) 455
TauI GCSGC 5 cut(s) 273, 276, 288, 357, 360
TfiI GAWTC 2 cut(s) 491, 801
TscAI CASTG 6 cut(s) 28, 272, 308, 523, 584, 825
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 3 cut(s) 367, 637, 809
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 4 cut(s) 88, 167, 452, 894
TspGWI ACGGA 1 cut(s) 166
TspMI CCCGGG 2 cut(s) 133, 224
TspRI CASTG 6 cut(s) 28, 272, 308, 523, 584, 825
Van91I CCANNNNNTGG 2 cut(s) 571, 666
VpaK11BI GGWCC 3 cut(s) 220, 513, 657
XmaI CCCGGG 2 cut(s) 133, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.