Rh4DG407400

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0009865
Physical Location & Seq
Forward (+)
62051310 .. 62055295
3986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG407400.1

Sequence Viewer

Length: 813 bp
ATGTCTCTAACCAGAAATATCACTGCAACTTTCTTCGTCTTCTTTCTCGTCAACCTCTCCTTCTTCACATCCCCGTCATCCTCCGCAACCGACACGTTCATCTACGGCGGTTGCTCCCAGCTCAAGTTCCCCCCGGGCTCGCCCTACGAGATGAAGCTCAACTCCATATTGGCCTCCGTGGTCAACTCGGCCATGTTAACTACTTACAACAACTTCACGGTCCCCGGGTCGTCGGGCACCGCGGACACGCTCTATGGCGTGTTTCAGTGCCGCGGCGACCTGAGCGGCAATGACTGTGCGCAGTGCGTGGCACGCGCCATCAGCCAGCTCGGCACGCTCTGCCTGGACGCGTGCGGCGGCGCGTTGCAGCTGGACGGGTGCTTCGTCAAGTACGACAACGCCACGTTCCTAGGGGTGGAGGACAAGACGGTGGTGATGAAGAAGTGTGGGCCGTCGATCGGGTATGACTCGGAGGGGTTGACCAGGCGGGATGCTGTGCTGGCTTATCTCGGGACCAGTGATGGGTCCTCCCGGCCGTTCAGGGTGAGTGGCGCCGGAAATGTCCAGGGTGTGGCCCAGTGCGTCGGGGACTTGAGTCCGAGCGAGTGCCAGGATTGTCTGTCCGACGCCGTAGGGCAGCTGAGGGCCGGGTGTGGGACCAGCACGTGGGGGGACTTGTTCTTGGCCAAGTGCTACGCGCGCTACTCGGAAGGTGGATATCACTCGCAGGGCCATGGTAAGCAGTTTCGCCACCCCACATGGTGGTGGTTCATAGCTTCTGGTATTTGGCTGTTTTTGCTTTGGTTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

270

Amino Acids

29.03

Weight (kDa)

6.27

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 38 - 133 4.7e-18 Salt stress response/antifungal
Stress-antifung PF01657 184 - 237 8.5e-10 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01660 AT2G01660 AT2G01660
fragaria_vesca FvH4_4g33800 FvH4_4g33800 FvH4_4g33800
malus_domestica MD04G1025700.v1.1 MD13G1029600.v1.1 MD16G1020400.v1.1
prunus_persica Prupe.1G331900_v2.0.a1
pyrus_communis pycom16g01830
rosa_chinensis RchiOBHm_Chr4g0443311
rosa_laevigata RLG00000005939
rosa_multiflora Rmu_ssc0000122.1_g000006
rosa_roxburghii Rroxscaffold_5G00383890
rosa_rugosa Rorug04G0345500
rosa_samantha Rh4AG400400 Rh4BG412000 Rh4CG427400 Rh4DG407400
rosa_wichuraiana Rw4G034540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 300
AccB1I GGYRCC 2 cut(s) 236, 551
AccB7I CCANNNNNTGG 3 cut(s) 571, 666, 762
AccBSI CCGCTC 1 cut(s) 285
AccII CGCG 7 cut(s) 242, 273, 315, 350, 362, 698, 700
AcoI YGGCCR 3 cut(s) 189, 533, 684
AcvI CACGTG 1 cut(s) 666
AcyI GRCGYC 2 cut(s) 552, 627
AdeI CACNNNGTG 1 cut(s) 762
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 7 cut(s) 415, 458, 522, 571, 654, 666, 762
AflIII ACRYGT 2 cut(s) 93, 348
AjnI CCWGG 4 cut(s) 342, 482, 564, 609
AluBI AGCT 6 cut(s) 121, 157, 328, 370, 640, 776
AluI AGCT 6 cut(s) 121, 157, 328, 370, 640, 776
Alw26I GTCTC 1 cut(s) 9
Ama87I CYCGRG 3 cut(s) 133, 224, 509
AoxI GGCC 8 cut(s) 171, 189, 449, 533, 573, 645, 684, 730
ApeKI GCWGC 2 cut(s) 367, 637
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AspA2I CCTAGG 1 cut(s) 409
AspLEI GCGC 6 cut(s) 301, 317, 362, 554, 700, 702
AspS9I GGNCC 8 cut(s) 220, 449, 513, 525, 574, 645, 657, 730
AsuC2I CCSGG 6 cut(s) 134, 135, 225, 226, 532, 649
AsuHPI GGTGA 2 cut(s) 445, 556
AvaI CYCGRG 3 cut(s) 133, 224, 509
AvaII GGWCC 4 cut(s) 220, 513, 525, 657
AvrII CCTAGG 1 cut(s) 409
BaeGI GKGCMC 1 cut(s) 239
BalI TGGCCA 1 cut(s) 686
BanI GGYRCC 2 cut(s) 236, 551
BanII GRGCYC 1 cut(s) 140
BbrPI CACGTG 1 cut(s) 666
BbsI GAAGAC 1 cut(s) 31
BbvCI CCTCAGC 1 cut(s) 641
BbvI GCAGC 2 cut(s) 379, 649
BccI CCATC 2 cut(s) 326, 515
BceAI ACGGC 4 cut(s) 121, 436, 520, 614
BciT130I CCWGG 4 cut(s) 344, 484, 566, 611
BcnI CCSGG 6 cut(s) 134, 135, 225, 226, 532, 649
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 410
BfoI RGCGCY 1 cut(s) 555
BglI GCCNNNNNGGC 1 cut(s) 330
BisI GCNGC 7 cut(s) 271, 274, 286, 355, 358, 368, 638
BlnI CCTAGG 1 cut(s) 409
BlsI GCNGC 7 cut(s) 272, 275, 287, 356, 359, 369, 639
Bme18I GGWCC 4 cut(s) 220, 513, 525, 657
BmeT110I CYCGRG 3 cut(s) 133, 224, 509
BmgT120I GGNCC 8 cut(s) 220, 449, 513, 525, 574, 645, 657, 730
BmiI GGNNCC 6 cut(s) 222, 238, 514, 526, 553, 658
BmrI ACTGGG 1 cut(s) 571
BmsI GCATC 1 cut(s) 481
BmuI ACTGGG 1 cut(s) 571
BoxI GACNNNNGTC 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 31
Bpu10I CCTNAGC 2 cut(s) 281, 641
BpuEI CTTGAG 2 cut(s) 107, 613
BpuMI CCSGG 6 cut(s) 134, 135, 225, 226, 532, 649
BsaAI YACGTR 1 cut(s) 666
BsaHI GRCGYC 2 cut(s) 552, 627
Bsc4I CCNNNNNNNGG 7 cut(s) 415, 458, 522, 571, 654, 666, 762
Bse1I ACTGG 2 cut(s) 516, 577
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 4 cut(s) 344, 484, 566, 611
BseGI GGATG 3 cut(s) 68, 77, 496
BseLI CCNNNNNNNGG 7 cut(s) 415, 458, 522, 571, 654, 666, 762
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 2 cut(s) 272, 632
BseNI ACTGG 2 cut(s) 516, 577
BsePI GCGCGC 1 cut(s) 698
BseSI GKGCMC 1 cut(s) 239
BseX3I CGGCCG 1 cut(s) 533
BseXI GCAGC 2 cut(s) 379, 649
BseYI CCCAGC 1 cut(s) 117
Bsh1236I CGCG 7 cut(s) 242, 273, 315, 350, 362, 698, 700
Bsh1285I CGRYCG 2 cut(s) 459, 536
BshFI GGCC 8 cut(s) 173, 191, 451, 535, 575, 647, 686, 732
BshNI GGYRCC 2 cut(s) 236, 551
BsiEI CGRYCG 2 cut(s) 459, 536
BsiHKCI CYCGRG 3 cut(s) 133, 224, 509
BsiSI CCGG 5 cut(s) 134, 225, 532, 555, 648
BslFI GGGAC 5 cut(s) 206, 526, 602, 670, 686
BslI CCNNNNNNNGG 7 cut(s) 415, 458, 522, 571, 654, 666, 762
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 5 cut(s) 206, 526, 602, 670, 686
BsnI GGCC 8 cut(s) 173, 191, 451, 535, 575, 647, 686, 732
BsoBI CYCGRG 3 cut(s) 133, 224, 509
Bsp1286I GDGCHC 2 cut(s) 140, 239
Bsp143I GATC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 733
BspANI GGCC 8 cut(s) 173, 191, 451, 535, 575, 647, 686, 732
BspCNI CTCAG 2 cut(s) 273, 633
BspFNI CGCG 7 cut(s) 242, 273, 315, 350, 362, 698, 700
BspLI GGNNCC 6 cut(s) 222, 238, 514, 526, 553, 658
BspT107I GGYRCC 2 cut(s) 236, 551
BsrBI CCGCTC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 295
BsrI ACTGG 2 cut(s) 516, 577
BssHII GCGCGC 1 cut(s) 698
BssMI GATC 1 cut(s) 456
BssNI GRCGYC 2 cut(s) 552, 627
BssT1I CCWWGG 2 cut(s) 409, 733
Bst2UI CCWGG 4 cut(s) 344, 484, 566, 611
Bst4CI ACNGT 3 cut(s) 220, 296, 430
BstACI GRCGYC 2 cut(s) 552, 627
BstAPI GCANNNNNTGC 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 666
BstC8I GCNNGC 7 cut(s) 140, 313, 326, 335, 352, 501, 700
BstDEI CTNAG 2 cut(s) 281, 641
BstDSI CCRYGG 4 cut(s) 177, 240, 271, 733
BstF5I GGATG 3 cut(s) 68, 77, 496
BstFNI CGCG 7 cut(s) 242, 273, 315, 350, 362, 698, 700
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 6 cut(s) 301, 317, 362, 554, 700, 702
BstKTI GATC 1 cut(s) 459
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 456
BstMCI CGRYCG 2 cut(s) 459, 536
BstMWI GCNNNNNNNGC 9 cut(s) 282, 312, 321, 330, 334, 339, 500, 699, 796
BstNI CCWGG 4 cut(s) 344, 484, 566, 611
BstPAI GACNNNNGTC 1 cut(s) 594
BstSLI GKGCMC 1 cut(s) 239
BstUI CGCG 7 cut(s) 242, 273, 315, 350, 362, 698, 700
BstV1I GCAGC 2 cut(s) 379, 649
BstV2I GAAGAC 1 cut(s) 31
BstZI CGGCCG 1 cut(s) 533
BsuRI GGCC 8 cut(s) 173, 191, 451, 535, 575, 647, 686, 732
BtgI CCRYGG 4 cut(s) 177, 240, 271, 733
BtsCI GGATG 3 cut(s) 68, 77, 496
BtsI GCAGTG 2 cut(s) 21, 308
BtsIMutI CAGTG 5 cut(s) 21, 272, 308, 523, 584
Cac8I GCNNGC 7 cut(s) 140, 313, 326, 335, 352, 501, 700
CfoI GCGC 6 cut(s) 301, 317, 362, 554, 700, 702
Cfr13I GGNCC 8 cut(s) 220, 449, 513, 525, 574, 645, 657, 730
Cfr42I CCGCGG 2 cut(s) 243, 274
Cfr9I CCCGGG 2 cut(s) 133, 224
CseI GACGC 3 cut(s) 356, 571, 635
Csp6I GTAC 1 cut(s) 391
CviAII CATG 3 cut(s) 193, 734, 759
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 2 cut(s) 281, 641
DinI GGCGCC 1 cut(s) 553
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
DraIII CACNNNGTG 1 cut(s) 762
EaeI YGGCCR 3 cut(s) 189, 533, 684
EagI CGGCCG 1 cut(s) 533
EclXI CGGCCG 1 cut(s) 533
Eco130I CCWWGG 2 cut(s) 409, 733
Eco24I GRGCYC 1 cut(s) 140
Eco32I GATATC 1 cut(s) 719
Eco47I GGWCC 4 cut(s) 220, 513, 525, 657
Eco52I CGGCCG 1 cut(s) 533
Eco72I CACGTG 1 cut(s) 666
Eco88I CYCGRG 3 cut(s) 133, 224, 509
EcoO109I RGGNCCY 1 cut(s) 525
EcoRII CCWGG 4 cut(s) 342, 482, 564, 609
EcoRV GATATC 1 cut(s) 719
EcoT14I CCWWGG 2 cut(s) 409, 733
EcoT38I GRGCYC 1 cut(s) 140
EgeI GGCGCC 1 cut(s) 553
EheI GGCGCC 1 cut(s) 553
ErhI CCWWGG 2 cut(s) 409, 733
FaeI CATG 3 cut(s) 196, 737, 762
FaiI YATR 7 cut(s) 167, 194, 255, 465, 735, 760, 773
FaqI GGGAC 5 cut(s) 206, 526, 602, 670, 686
FatI CATG 3 cut(s) 192, 733, 758
FauI CCCGC 1 cut(s) 480
Fnu4HI GCNGC 7 cut(s) 271, 274, 286, 355, 358, 368, 638
FokI GGATG 3 cut(s) 55, 64, 503
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 7 cut(s) 271, 274, 286, 355, 358, 368, 638
FspBI CTAG 1 cut(s) 410
FspI TGCGCA 1 cut(s) 300
GlaI GCGC 6 cut(s) 300, 316, 361, 553, 699, 701
GluI GCNGC 7 cut(s) 271, 274, 286, 355, 358, 368, 638
GsaI CCCAGC 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 8 cut(s) 173, 191, 451, 535, 575, 647, 686, 732
HapII CCGG 5 cut(s) 134, 225, 532, 555, 648
HgaI GACGC 3 cut(s) 356, 571, 635
HhaI GCGC 6 cut(s) 301, 317, 362, 554, 700, 702
Hin1I GRCGYC 2 cut(s) 552, 627
Hin1II CATG 3 cut(s) 196, 737, 762
Hin6I GCGC 6 cut(s) 299, 315, 360, 552, 698, 700
HinP1I GCGC 6 cut(s) 299, 315, 360, 552, 698, 700
HincII GTYRAC 4 cut(s) 52, 184, 198, 480
HindII GTYRAC 4 cut(s) 52, 184, 198, 480
HinfI GANTC 2 cut(s) 467, 595
HpaI GTTAAC 1 cut(s) 198
HpaII CCGG 5 cut(s) 134, 225, 532, 555, 648
HphI GGTGA 2 cut(s) 445, 556
Hpy166II GTNNAC 4 cut(s) 52, 184, 198, 480
Hpy188I TCNGA 4 cut(s) 472, 600, 625, 709
Hpy188III TCNNGA 1 cut(s) 511
Hpy8I GTNNAC 4 cut(s) 52, 184, 198, 480
Hpy99I CGWCG 4 cut(s) 235, 457, 587, 629
HpyAV CCTTC 2 cut(s) 70, 704
HpyCH4III ACNGT 3 cut(s) 220, 296, 430
HpyCH4IV ACGT 3 cut(s) 95, 404, 665
HpyCH4V TGCA 2 cut(s) 26, 367
HpyF10VI GCNNNNNNNGC 9 cut(s) 282, 312, 321, 330, 334, 339, 500, 699, 796
HpyF3I CTNAG 2 cut(s) 281, 641
HpySE526I ACGT 3 cut(s) 95, 404, 665
Hsp92I GRCGYC 2 cut(s) 552, 627
Hsp92II CATG 3 cut(s) 196, 737, 762
HspAI GCGC 6 cut(s) 299, 315, 360, 552, 698, 700
KasI GGCGCC 1 cut(s) 551
KspAI GTTAAC 1 cut(s) 198
KspI CCGCGG 2 cut(s) 243, 274
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 2 cut(s) 379, 649
LweI GCATC 1 cut(s) 481
MaeI CTAG 1 cut(s) 410
MaeII ACGT 3 cut(s) 95, 404, 665
MalI GATC 1 cut(s) 458
MbiI CCGCTC 1 cut(s) 285
MboI GATC 1 cut(s) 456
MboII GAAGA 4 cut(s) 25, 31, 55, 451
MhlI GDGCHC 2 cut(s) 140, 239
MlsI TGGCCA 1 cut(s) 686
MluI ACGCGT 1 cut(s) 348
MluNI TGGCCA 1 cut(s) 686
Mly113I GGCGCC 1 cut(s) 552
MlyI GAGTC 2 cut(s) 461, 604
MmeI TCCRAC 1 cut(s) 648
MnlI CCTC 7 cut(s) 65, 91, 184, 412, 466, 538, 636
Mox20I TGGCCA 1 cut(s) 686
MscI TGGCCA 1 cut(s) 686
MseI TTAA 2 cut(s) 197, 806
MslI CAYNNNNRTG 1 cut(s) 763
Msp20I TGGCCA 1 cut(s) 686
MspA1I CMGCKG 4 cut(s) 242, 273, 370, 640
MspI CCGG 5 cut(s) 134, 225, 532, 555, 648
MvaI CCWGG 4 cut(s) 344, 484, 566, 611
MvnI CGCG 7 cut(s) 242, 273, 315, 350, 362, 698, 700
MwoI GCNNNNNNNGC 9 cut(s) 282, 312, 321, 330, 334, 339, 500, 699, 796
NarI GGCGCC 1 cut(s) 552
NciI CCSGG 6 cut(s) 134, 135, 225, 226, 532, 649
NcoI CCATGG 1 cut(s) 733
NdeII GATC 1 cut(s) 456
NlaIII CATG 3 cut(s) 196, 737, 762
NlaIV GGNNCC 6 cut(s) 222, 238, 514, 526, 553, 658
NmeAIII GCCGAG 2 cut(s) 167, 309
NsbI TGCGCA 1 cut(s) 300
PauI GCGCGC 1 cut(s) 698
PcsI WCGNNNNNNNCGW 2 cut(s) 381, 390
PflMI CCANNNNNTGG 3 cut(s) 571, 666, 762
PkrI GCNGC 7 cut(s) 272, 275, 287, 356, 359, 369, 639
Ple19I CGATCG 1 cut(s) 459
PleI GAGTC 2 cut(s) 461, 603
PluTI GGCGCC 1 cut(s) 555
PmaCI CACGTG 1 cut(s) 666
PmlI CACGTG 1 cut(s) 666
PpsI GAGTC 2 cut(s) 461, 603
Ppu21I YACGTR 1 cut(s) 666
PpuMI RGGWCCY 1 cut(s) 525
PshAI GACNNNNGTC 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 525
Psp6I CCWGG 4 cut(s) 342, 482, 564, 609
PspCI CACGTG 1 cut(s) 666
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 4 cut(s) 342, 482, 564, 609
PspN4I GGNNCC 6 cut(s) 222, 238, 514, 526, 553, 658
PspPI GGNCC 8 cut(s) 220, 449, 513, 525, 574, 645, 657, 730
PspPPI RGGWCCY 1 cut(s) 525
PteI GCGCGC 1 cut(s) 698
PvuI CGATCG 1 cut(s) 459
PvuII CAGCTG 2 cut(s) 370, 640
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 763
SacII CCGCGG 2 cut(s) 243, 274
SaqAI TTAA 2 cut(s) 197, 806
SatI GCNGC 7 cut(s) 271, 274, 286, 355, 358, 368, 638
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 8 cut(s) 220, 449, 513, 525, 574, 645, 657, 730
SchI GAGTC 2 cut(s) 461, 604
SduI GDGCHC 2 cut(s) 140, 239
SfaNI GCATC 1 cut(s) 481
SfoI GGCGCC 1 cut(s) 553
Sfr303I CCGCGG 2 cut(s) 243, 274
SgrBI CCGCGG 2 cut(s) 243, 274
SinI GGWCC 4 cut(s) 220, 513, 525, 657
SmaI CCCGGG 2 cut(s) 135, 226
SmiMI CAYNNNNRTG 1 cut(s) 763
SmlI CTYRAG 2 cut(s) 122, 592
SmoI CTYRAG 2 cut(s) 122, 592
SspDI GGCGCC 1 cut(s) 551
SspMI CTAG 1 cut(s) 410
StyI CCWWGG 2 cut(s) 409, 733
TaaI ACNGT 3 cut(s) 220, 296, 430
TaiI ACGT 3 cut(s) 98, 407, 668
TaqI TCGA 1 cut(s) 455
TauI GCSGC 5 cut(s) 273, 276, 288, 357, 360
Tru1I TTAA 2 cut(s) 197, 806
Tru9I TTAA 2 cut(s) 197, 806
TscAI CASTG 5 cut(s) 28, 272, 308, 523, 584
TseI GCWGC 2 cut(s) 367, 637
TspDTI ATGAA 4 cut(s) 88, 167, 452, 760
TspGWI ACGGA 1 cut(s) 166
TspMI CCCGGG 2 cut(s) 133, 224
TspRI CASTG 5 cut(s) 28, 272, 308, 523, 584
Van91I CCANNNNNTGG 3 cut(s) 571, 666, 762
VpaK11BI GGWCC 4 cut(s) 220, 513, 525, 657
XmaI CCCGGG 2 cut(s) 133, 224
XmaJI CCTAGG 1 cut(s) 409
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.