Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014986

Physical Location & Seq

Genomic Coordinates Reverse (-)

670461 .. 673327

Gene Structure 2867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCGATGCTTCAGACGAATCTTGGCTTCATTACTTCTCCGACATTTCTGTGTCCGAAGCTTAAAGTCAAATTGAACTCTTATCTGTGGTTTAGCTATCGTTCTCAAGTTCAAAAACTGGATTTTTCGAAAAGGGTTAATAGAAGCTACAAAAGAGATGCTTTATTATTGTCAATCAAGTGTTCTTCATCGACTGGATTTGATAATAGCAATGTTGTTGTGAAGGAGAAGAGTGTATCTGTGATTCTTTTAGCTGGAGGTCAAGGCAAGAGAATGAAAATGAGTATGCCAAAGCAGTACATACCACTTCTTGGTCAGCCAATTGCTTTGTATAGCTTTTTCACGTTTTCACGTATGCCTGAAGTGAAGGAAATTGTAGTTGTATGTGATCCTTTTTTCAGAGACATTTTTGAAGAATACGAAGAATCAATTGATGTTGATCTTAGATTCGCTATTCCTGGCAAAGAAAGACAAGATTCTGTTTACAGTGGACTTCAGGAAATCGATGTGAACTCTGAGCTTGTTTGTATCCACGACTCTGCCCGACCATTGGTGAATACTGAAGATGTCGAGAAGGTCCTTAAAGATGGTTCCGCGGTTGGAGCAGCTGTACTTGGTGTTCCTGCTAAAGCTACAATCAAAGAGGTCAATTCTGATTCGCTTGTGGTGAAAACTCTCGACAGAAAAACCCTATGGGAAATGCAGACACCACAGGTGATCAAACCAGAGCTATTGAAAAAGGGTTTCGAGCTTGTAAAAAGTGAAGGTCTAGAGGTAACAGATGACGTTTCGATTGTTGAATACCTCAAGCATCCAGTTTATGTCTCTCAAGGATCTTATACAAACATCAAGGTTACAACACCTGATGATTTACTGCTTGCTGAGAGAATCTTGAGCGAGGACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046490 GO:0050518 GO:0070567 GO:0071704 GO:0090407 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

IspD

Protein Analysis

302

Amino Acids

33.94

Weight (kDa)

5.9

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IspD	PF01128	79 - 299	1.1e-54	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NTP_transf_3	PF12804	81 - 204	2.8e-08	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02500 AT2G02500
fragaria_vesca	FvH4_5g27480
malus_domestica	MD08G1249400.v1.1 MD15G1444200.v1.1
prunus_persica	Prupe.1G586600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218881
rosa_laevigata	RLG00000002347
rosa_multiflora	Rmu_sc0003823.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240430
rosa_rugosa	Rorug07G0179400
rosa_samantha	Rh7AG322700 Rh7BG313800 Rh7CG339500 Rh7DG319900
rosa_wichuraiana	Rw7G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccII	CGCG	1 cut(s)	596
AciI	CCGC	2 cut(s)	594, 596
AclWI	GGATC	2 cut(s)	383, 841
AcuI	CTGAAG	3 cut(s)	381, 479, 582
AfaI	GTAC	2 cut(s)	299, 612
AfiI	CCNNNNNNNGG	2 cut(s)	311, 550
AgsI	TTSAA	5 cut(s)	76, 113, 413, 736, 800
AjnI	CCWGG	1 cut(s)	457
Alw26I	GTCTC	2 cut(s)	396, 829
AlwI	GGATC	2 cut(s)	383, 841
ApeKI	GCWGC	1 cut(s)	605
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	3 cut(s)	565, 679, 727
AsuII	TTCGAA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	577
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	1 cut(s)	581
BciT130I	CCWGG	1 cut(s)	459
BciVI	GTATCC	1 cut(s)	539
BclI	TGATCA	1 cut(s)	717
BcoDI	GTCTC	2 cut(s)	396, 829
BfaI	CTAG	1 cut(s)	770
BfuI	GTATCC	1 cut(s)	539
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	148, 820
BpmI	CTGGAG	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	3 cut(s)	90, 791, 813
Bsa29I	ATCGAT	1 cut(s)	504
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	594
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 550
Bse1I	ACTGG	3 cut(s)	123, 199, 815
Bse3DI	GCAATG	1 cut(s)	217
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	459
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	1 cut(s)	811
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	311, 550
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	507, 873
BseNI	ACTGG	3 cut(s)	123, 199, 815
BseXI	GCAGC	1 cut(s)	617
Bsh1236I	CGCG	1 cut(s)	596
BshVI	ATCGAT	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	311, 550
BsmAI	GTCTC	2 cut(s)	396, 829
Bsp119I	TTCGAA	1 cut(s)	128
Bsp143I	GATC	4 cut(s)	388, 439, 717, 833
BspACI	CCGC	2 cut(s)	594, 596
BspCNI	CTCAG	2 cut(s)	508, 874
BspDI	ATCGAT	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	596
BspHI	TCATGA	1 cut(s)	905
BspLI	GGNNCC	1 cut(s)	592
BspPI	GGATC	2 cut(s)	383, 841
BspT104I	TTCGAA	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	217
BsrI	ACTGG	3 cut(s)	123, 199, 815
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	4 cut(s)	388, 439, 717, 833
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	353
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	879
BstDEI	CTNAG	3 cut(s)	443, 516, 882
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	1 cut(s)	811
BstFNI	CGCG	1 cut(s)	596
BstKTI	GATC	4 cut(s)	391, 442, 720, 836
BstMAI	GTCTC	2 cut(s)	396, 829
BstMBI	GATC	4 cut(s)	388, 439, 717, 833
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	833
BstYI	RGATCY	1 cut(s)	833
Bsu15I	ATCGAT	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	539
BsuTUI	ATCGAT	1 cut(s)	504
BtgI	CCRYGG	1 cut(s)	594
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	811
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	1 cut(s)	879
CciI	TCATGA	1 cut(s)	905
Cfr13I	GGNCC	1 cut(s)	577
Cfr42I	CCGCGG	1 cut(s)	597
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	298, 611
CviAII	CATG	1 cut(s)	906
CviQI	GTAC	2 cut(s)	298, 611
DdeI	CTNAG	3 cut(s)	443, 516, 882
DpnI	GATC	4 cut(s)	390, 441, 719, 835
DpnII	GATC	4 cut(s)	388, 439, 717, 833
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	577
Eco57I	CTGAAG	3 cut(s)	381, 479, 582
EcoO109I	RGGNCCY	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	457
FaeI	CATG	1 cut(s)	909
FaiI	YATR	9 cut(s)	287, 302, 333, 356, 385, 694, 822, 840, 907
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FatI	CATG	1 cut(s)	905
FbaI	TGATCA	1 cut(s)	717
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	1 cut(s)	798
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	1 cut(s)	770
GluI	GCNGC	1 cut(s)	606
GsuI	CTGGAG	1 cut(s)	276
Hin1II	CATG	1 cut(s)	909
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	9 cut(s)	19, 244, 425, 447, 476, 536, 656, 888, 902
HphI	GGTGA	3 cut(s)	565, 679, 727
Hpy166II	GTNNAC	3 cut(s)	484, 491, 511
Hpy188I	TCNGA	6 cut(s)	15, 42, 57, 401, 517, 655
Hpy188III	TCNNGA	6 cut(s)	497, 571, 677, 770, 892, 906
Hpy8I	GTNNAC	3 cut(s)	484, 491, 511
HpyAV	CCTTC	4 cut(s)	217, 361, 568, 758
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	3 cut(s)	344, 352, 786
HpyCH4V	TGCA	1 cut(s)	703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	3 cut(s)	443, 516, 882
HpySE526I	ACGT	3 cut(s)	344, 352, 786
Hsp92II	CATG	1 cut(s)	909
Ksp22I	TGATCA	1 cut(s)	717
KspI	CCGCGG	1 cut(s)	597
Kzo9I	GATC	4 cut(s)	388, 439, 717, 833
LmnI	GCTCC	1 cut(s)	602
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	2 cut(s)	148, 820
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	3 cut(s)	344, 352, 786
MaeIII	GTNAC	2 cut(s)	775, 853
MalI	GATC	4 cut(s)	390, 441, 719, 835
MboI	GATC	4 cut(s)	388, 439, 717, 833
MboII	GAAGA	5 cut(s)	177, 241, 425, 434, 575
MfeI	CAATTG	2 cut(s)	321, 429
MflI	RGATCY	1 cut(s)	833
MluCI	AATT	5 cut(s)	71, 321, 372, 429, 649
MlyI	GAGTC	2 cut(s)	530, 896
MmeI	TCCRAC	2 cut(s)	65, 580
MnlI	CCTC	5 cut(s)	251, 637, 766, 815, 892
MseI	TTAA	3 cut(s)	63, 138, 582
MslI	CAYNNNNRTG	1 cut(s)	49
MspA1I	CMGCKG	2 cut(s)	596, 608
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	2 cut(s)	321, 429
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	1 cut(s)	602
NdeII	GATC	4 cut(s)	388, 439, 717, 833
NlaIII	CATG	1 cut(s)	909
NlaIV	GGNNCC	1 cut(s)	592
NspV	TTCGAA	1 cut(s)	128
PagI	TCATGA	1 cut(s)	905
PfeI	GAWTC	7 cut(s)	19, 244, 425, 447, 476, 656, 888
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	2 cut(s)	530, 896
PpsI	GAGTC	2 cut(s)	530, 896
Ppu21I	YACGTR	1 cut(s)	353
PpuMI	RGGWCCY	1 cut(s)	577
Psp5II	RGGWCCY	1 cut(s)	577
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	592
PspPI	GGNCC	1 cut(s)	577
PspPPI	RGGWCCY	1 cut(s)	577
PsrI	GAACNNNNNNTAC	2 cut(s)	603, 635
PsuI	RGATCY	1 cut(s)	833
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	2 cut(s)	299, 612
RsaNI	GTAC	2 cut(s)	298, 611
RseI	CAYNNNNRTG	1 cut(s)	49
SacII	CCGCGG	1 cut(s)	597
SaqAI	TTAA	3 cut(s)	63, 138, 582
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	4 cut(s)	388, 439, 717, 833
Sau96I	GGNCC	1 cut(s)	577
SchI	GAGTC	2 cut(s)	530, 896
ScrFI	CCNGG	1 cut(s)	459
SfaNI	GCATC	2 cut(s)	148, 820
Sfr303I	CCGCGG	1 cut(s)	597
SfuI	TTCGAA	1 cut(s)	128
SgrBI	CCGCGG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	577
SmiMI	CAYNNNNRTG	1 cut(s)	49
SmlI	CTYRAG	4 cut(s)	105, 806, 828, 892
SmoI	CTYRAG	4 cut(s)	105, 806, 828, 892
Sse9I	AATT	5 cut(s)	71, 321, 372, 429, 649
SsiI	CCGC	2 cut(s)	594, 596
SspMI	CTAG	1 cut(s)	770
StyD4I	CCNGG	1 cut(s)	457
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	3 cut(s)	347, 355, 789
TaqI	TCGA	7 cut(s)	128, 191, 504, 570, 678, 747, 791
TasI	AATT	5 cut(s)	71, 321, 372, 429, 649
TatI	WGTACW	2 cut(s)	297, 610
TfiI	GAWTC	7 cut(s)	19, 244, 425, 447, 476, 656, 888
Tru1I	TTAA	3 cut(s)	63, 138, 582
Tru9I	TTAA	3 cut(s)	63, 138, 582
TscAI	CASTG	1 cut(s)	493
TseI	GCWGC	1 cut(s)	605
TspDTI	ATGAA	3 cut(s)	19, 177, 290
TspRI	CASTG	1 cut(s)	493
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	577
XbaI	TCTAGA	1 cut(s)	769
XspI	CTAG	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.