Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014986

Physical Location & Seq

Genomic Coordinates Reverse (-)

18725985 .. 18732238

Gene Structure 6254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGCTCTTGGTTCATAGACCTCACTTCACCCTCTCCCCTTCTTCTTCTTCTTCACTCCTGTTCTCAAATGACAACAACCTCCGACCAATTTCAGGTCATCGGTTCAGTTTCAGCGGAAAGCCTCGCAGGGCTAGAATCGCAACCTCCGGCTTCACTTGTTTCACTGCAAAGCTTGCCCAGGAAATTAAACGGGAGACTGTAGTTGTGAAAGAGAAGAGCGTGTCGGTGATTCTTTTGGCTGGAGGCAAGGGTACAAGGATGGGTGCCAGTATGCCGAAACAGTATCTCCCGCTTTTAAGCCAGCCGATTGCATTGTACAGCTTTTATACTTTCTCGCGCATGCCTCAAGTGAAGGAAATCATTGTAGTTTGTGATCCCTCCTACAGGGATGTTTTTGAAGACGCCAAGTATAAGATCCAGACAGCACTCAAATTCACACTACCGGGGAAGGAAAGACAAGATTCTGTTTACAGTGGACTACAGGCTATTGATTTGACCTCTGAACTTGTTTGCATCCATGATTCTGCAAGACCTCTGGTATCATCAGAAAATGTTGAGAAGGTTCTCAAAGATGGTTGGTTAAATGGAGCAGCTGTACTAGGCGTTCCAGTAAAAGCGACCATCAAAGAGGCAAACAATGAGTCTTTTGTAGTTCGAACTCTGGACAGGAGAACACTTTGGGAAATGCAGACACCACAGGTCATCAAACCTGAATTGCTCAAAAAGGGCTTTGAGCTTGTTAACAGAGAGGGCCTTGAAGTGACTGATGACGTGTCTATTGTTGAGCACCTTCCACATCCTGTTTACATCACTGAAGGATCTTACACCAACATCAAGGTGACAACCCCAGATGATTTGTTACTCGCAGAAAGAATATTGAGTATGGACACTAAAAAGTCCTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046490 GO:0050518 GO:0070567 GO:0071704 GO:0090407 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

IspD

Protein Analysis

304

Amino Acids

33.8

Weight (kDa)

8.97

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IspD	PF01128	75 - 295	3.7e-56	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NTP_transf_3	PF12804	77 - 191	1.2e-08	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02500 AT2G02500
fragaria_vesca	FvH4_5g27480
malus_domestica	MD08G1249400.v1.1 MD15G1444200.v1.1
prunus_persica	Prupe.1G586600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218881
rosa_laevigata	RLG00000002347
rosa_multiflora	Rmu_sc0003823.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240430
rosa_rugosa	Rorug07G0179400
rosa_samantha	Rh7AG322700 Rh7BG313800 Rh7CG339500 Rh7DG319900
rosa_wichuraiana	Rw7G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AccII	CGCG	1 cut(s)	340
AciI	CCGC	2 cut(s)	117, 293
AclWI	GGATC	3 cut(s)	371, 412, 829
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	837
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	3 cut(s)	256, 320, 600
AfiI	CCNNNNNNNGG	2 cut(s)	95, 387
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	2 cut(s)	401, 761
AjiI	CACGTC	1 cut(s)	775
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	4 cut(s)	175, 324, 596, 739
AluI	AGCT	4 cut(s)	175, 324, 596, 739
Alw21I	GWGCWC	1 cut(s)	792
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	371, 412, 829
AoxI	GGCC	1 cut(s)	754
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
AspLEI	GCGC	2 cut(s)	7, 342
AspS9I	GGNCC	1 cut(s)	754
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	3 cut(s)	22, 241, 853
AsuII	TTCGAA	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	792
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	3 cut(s)	256, 569, 632
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	135, 602
BfmI	CTRYAG	3 cut(s)	201, 385, 482
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	595
Bme1390I	CCNGG	2 cut(s)	182, 447
BmgBI	CACGTC	1 cut(s)	775
BmgT120I	GGNCC	1 cut(s)	754
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	182, 447
BmsI	GCATC	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	658
BpuEI	CTTGAG	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	180, 446
BsaXI	ACNNNNNCTCC	4 cut(s)	273, 303, 582, 612
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 387
Bse1I	ACTGG	2 cut(s)	270, 611
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	180, 446
BseGI	GGATG	4 cut(s)	267, 397, 516, 799
BseLI	CCNNNNNNNGG	2 cut(s)	95, 387
BseNI	ACTGG	2 cut(s)	270, 611
BseXI	GCAGC	1 cut(s)	605
Bsh1236I	CGCG	1 cut(s)	340
BshFI	GGCC	1 cut(s)	756
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	792
BsiSI	CCGG	2 cut(s)	150, 446
BslI	CCNNNNNNNGG	2 cut(s)	95, 387
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	756
Bsp119I	TTCGAA	1 cut(s)	658
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	376, 417, 821
BspACI	CCGC	2 cut(s)	117, 293
BspANI	GGCC	1 cut(s)	756
BspFNI	CGCG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	3 cut(s)	371, 412, 829
BspQI	GCTCTTC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	658
BspT107I	GGYRCC	1 cut(s)	266
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	270, 611
BssECI	CCNNGG	2 cut(s)	180, 446
BssMI	GATC	3 cut(s)	376, 417, 821
BssNI	GRCGYC	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	3 cut(s)	202, 285, 476
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	318
BstBI	TTCGAA	1 cut(s)	658
BstC8I	GCNNGC	3 cut(s)	177, 305, 344
BstDEI	CTNAG	1 cut(s)	904
BstENI	CCTNNNNNAGG	1 cut(s)	385
BstF5I	GGATG	4 cut(s)	267, 397, 516, 799
BstFNI	CGCG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 342
BstKTI	GATC	3 cut(s)	379, 420, 824
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	3 cut(s)	376, 417, 821
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 176
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	180, 445
BstSFI	CTRYAG	3 cut(s)	201, 385, 482
BstUI	CGCG	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	605
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	2 cut(s)	417, 821
BstYI	RGATCY	2 cut(s)	417, 821
BsuRI	GGCC	1 cut(s)	756
BtrI	CACGTC	1 cut(s)	775
BtsCI	GGATG	4 cut(s)	267, 397, 516, 799
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	165, 481, 813
Cac8I	GCNNGC	3 cut(s)	177, 305, 344
CfoI	GCGC	2 cut(s)	7, 342
Cfr13I	GGNCC	1 cut(s)	754
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	3 cut(s)	255, 319, 599
CviAII	CATG	2 cut(s)	343, 521
CviQI	GTAC	3 cut(s)	255, 319, 599
DdeI	CTNAG	1 cut(s)	904
DpnI	GATC	3 cut(s)	378, 419, 823
DpnII	GATC	3 cut(s)	376, 417, 821
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	837
EcoNI	CCTNNNNNAGG	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	346, 524
FaiI	YATR	7 cut(s)	18, 275, 330, 344, 414, 522, 887
FatI	CATG	2 cut(s)	342, 520
FauI	CCCGC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	4 cut(s)	274, 404, 503, 786
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	2 cut(s)	135, 602
GlaI	GCGC	2 cut(s)	6, 341
GluI	GCNGC	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	756
HapII	CCGG	2 cut(s)	150, 446
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	2 cut(s)	7, 342
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	2 cut(s)	346, 524
Hin6I	GCGC	2 cut(s)	5, 340
HinP1I	GCGC	2 cut(s)	5, 340
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	5 cut(s)	138, 232, 464, 524, 644
HpaI	GTTAAC	1 cut(s)	745
HpaII	CCGG	2 cut(s)	150, 446
HphI	GGTGA	3 cut(s)	22, 241, 853
Hpy166II	GTNNAC	4 cut(s)	472, 479, 745, 808
Hpy188I	TCNGA	4 cut(s)	86, 505, 550, 907
Hpy188III	TCNNGA	2 cut(s)	421, 665
Hpy8I	GTNNAC	4 cut(s)	472, 479, 745, 808
HpyAV	CCTTC	6 cut(s)	51, 349, 445, 556, 803, 812
HpyCH4III	ACNGT	3 cut(s)	202, 285, 476
HpyCH4IV	ACGT	1 cut(s)	774
HpyCH4V	TGCA	5 cut(s)	170, 314, 516, 530, 691
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 176
HpyF3I	CTNAG	1 cut(s)	904
HpySE526I	ACGT	1 cut(s)	774
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	346, 524
HspAI	GCGC	2 cut(s)	5, 340
KspAI	GTTAAC	1 cut(s)	745
Kzo9I	GATC	3 cut(s)	376, 417, 821
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	590
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	2 cut(s)	135, 602
MaeII	ACGT	1 cut(s)	774
MaeIII	GTNAC	3 cut(s)	763, 841, 861
MalI	GATC	3 cut(s)	378, 419, 823
MboI	GATC	3 cut(s)	376, 417, 821
MboII	GAAGA	6 cut(s)	36, 39, 42, 45, 229, 413
MflI	RGATCY	2 cut(s)	417, 821
MhlI	GDGCHC	1 cut(s)	792
MluCI	AATT	4 cut(s)	90, 186, 434, 716
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	1 cut(s)	109
MseI	TTAA	4 cut(s)	189, 299, 584, 744
MslI	CAYNNNNRTG	1 cut(s)	839
MspA1I	CMGCKG	2 cut(s)	117, 596
MspI	CCGG	2 cut(s)	150, 446
MspR9I	CCNGG	2 cut(s)	182, 447
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	140, 176
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	3 cut(s)	376, 417, 821
NlaIII	CATG	2 cut(s)	346, 524
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	763, 841
NspI	RCATGY	1 cut(s)	346
NspV	TTCGAA	1 cut(s)	658
PaeI	GCATGC	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	212
PfeI	GAWTC	4 cut(s)	138, 232, 464, 524
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	754
PsrI	GAACNNNNNNTAC	2 cut(s)	591, 623
PsuI	RGATCY	2 cut(s)	417, 821
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	3 cut(s)	256, 320, 600
RsaNI	GTAC	3 cut(s)	255, 319, 599
RseI	CAYNNNNRTG	1 cut(s)	839
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	4 cut(s)	189, 299, 584, 744
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	3 cut(s)	376, 417, 821
Sau96I	GGNCC	1 cut(s)	754
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	182, 447
SduI	GDGCHC	1 cut(s)	792
SfaNI	GCATC	1 cut(s)	525
SfcI	CTRYAG	3 cut(s)	201, 385, 482
SfuI	TTCGAA	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
SphI	GCATGC	1 cut(s)	346
Sse9I	AATT	4 cut(s)	90, 186, 434, 716
SsiI	CCGC	2 cut(s)	117, 293
SspI	AATATT	1 cut(s)	879
SspMI	CTAG	2 cut(s)	135, 602
StyD4I	CCNGG	2 cut(s)	180, 445
TaaI	ACNGT	3 cut(s)	202, 285, 476
TaiI	ACGT	1 cut(s)	777
TaqI	TCGA	1 cut(s)	658
TasI	AATT	4 cut(s)	90, 186, 434, 716
TatI	WGTACW	2 cut(s)	318, 598
TfiI	GAWTC	4 cut(s)	138, 232, 464, 524
Tru1I	TTAA	4 cut(s)	189, 299, 584, 744
Tru9I	TTAA	4 cut(s)	189, 299, 584, 744
TscAI	CASTG	3 cut(s)	172, 481, 820
TseFI	GTSAC	2 cut(s)	763, 841
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	2 cut(s)	763, 841
TspDTI	ATGAA	1 cut(s)	5
TspRI	CASTG	3 cut(s)	172, 481, 820
XagI	CCTNNNNNAGG	1 cut(s)	385
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	346
XspI	CTAG	2 cut(s)	135, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.