Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014986

Physical Location & Seq

Genomic Coordinates Reverse (-)

37104346 .. 37109220

Gene Structure 4875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19594

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCACTTGGCTTCACCCTCTCTGCTTCTTCTTCACTGCTCTTCTCAAATGACAACCTCCGAATTCCGCCAATCTCACACTCCAACCTACGATTTGCAGGCAACTCCCACCTCCTCTATTTCTCAATTTTCCGTTCAACTTCAACCCTCTGTTACTATTATCTCACACTACCATGCCTTTTCAGGTCATCAATTCAATTTCAGGGGAAAGCATCATAAGGCTAGAATTGCAACCTCCAGCTTCACTTGTTTCTCTGCCCTGGAAGATAAACCGGAGGAGTCTGTTGTGAAAGAGAAAAGCGTGTCAGTGATTCTTCTGGCTGGAGGCAAGGGTAAAAGGATGGGTGCCAGTATGCCGAAACAGTATCTCCCGCTTTTAAGCCAGCCTATTGCATTGTACAGCTTCTATACTTTCTCACGCATGCCTCAAGTGAAGGAAATCATTGTAGTTTGTGATCCCTCCTACAGGGATGTTTTTGAAGACTCCAAGCATAAGATCCACACAGAACTTAAATTCACGTTGCCTGGGAAGGAAAGACAAGATTCTGTTTACAGTGGACTCCAGGCTATTGATTTGACCTCTGAGCTTGTTTGCATCCATGATTCTGCAAGACCTCTGGTATCATCAGGAGATGTTGAGAAGGTTCTTAAAGATGGTTGGTTAAATGGAGCAGCTGTACTTGGGGTTCCAGTAAAAGCGACCATCAAAGAGGCAAACTATGAGTCTTTTGTAGTCCGAACTCTGGACAGGAGAACACTTTGGGAAATGCAGACACCACAGGTCATCAAACCTGACTTGCTCAAAAAGGGTTTTGAACTTGTTAACAGAGAAGGCCTTGAAGTTACTGATGACGTGTCTATTGTTGAGCACCTTCCACATCCTGTGTACATCACTGAAGGATCTTACACCAACATCAAGGTCACAACGCCAGATGATTTATTACTCGCAGAAAGAATATTGAGTATGGACACTAAAAAGTCTTCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046490 GO:0050518 GO:0070567 GO:0071704 GO:0090407 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

IspD

Protein Analysis

329

Amino Acids

36.72

Weight (kDa)

6.9

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IspD	PF01128	101 - 321	1.7e-55	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NTP_transf_3	PF12804	103 - 216	2.3e-08	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02500 AT2G02500
fragaria_vesca	FvH4_5g27480
malus_domestica	MD08G1249400.v1.1 MD15G1444200.v1.1
prunus_persica	Prupe.1G586600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218881
rosa_laevigata	RLG00000002347
rosa_multiflora	Rmu_sc0003823.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240430
rosa_rugosa	Rorug07G0179400
rosa_samantha	Rh7AG322700 Rh7BG313800 Rh7CG339500 Rh7DG319900
rosa_wichuraiana	Rw7G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AciI	CCGC	2 cut(s)	67, 371
AclWI	GGATC	3 cut(s)	449, 490, 907
AcsI	RAATTY	2 cut(s)	62, 512
AcuI	CTGAAG	2 cut(s)	915, 966
AfaI	GTAC	3 cut(s)	398, 678, 887
AfiI	CCNNNNNNNGG	2 cut(s)	465, 742
AflIII	ACRYGT	1 cut(s)	852
AgsI	TTSAA	6 cut(s)	137, 143, 196, 479, 815, 839
AjiI	CACGTC	1 cut(s)	853
AjnI	CCWGG	3 cut(s)	258, 523, 561
AluBI	AGCT	4 cut(s)	240, 402, 586, 674
AluI	AGCT	4 cut(s)	240, 402, 586, 674
Alw21I	GWGCWC	1 cut(s)	870
AlwI	GGATC	3 cut(s)	449, 490, 907
AoxI	GGCC	1 cut(s)	832
ApeKI	GCWGC	1 cut(s)	671
ApoI	RAATTY	2 cut(s)	62, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
AsuHPI	GGTGA	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	344
BbsI	GAAGAC	2 cut(s)	486, 972
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	1 cut(s)	683
BccI	CCATC	3 cut(s)	334, 647, 710
BciT130I	CCWGG	3 cut(s)	260, 525, 563
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	463
BisI	GCNGC	1 cut(s)	672
BlsI	GCNGC	1 cut(s)	673
Bme1390I	CCNGG	3 cut(s)	260, 525, 563
BmgBI	CACGTC	1 cut(s)	853
BmiI	GGNNCC	2 cut(s)	346, 687
BmrFI	CCNGG	3 cut(s)	260, 525, 563
BmsI	GCATC	2 cut(s)	220, 603
BpiI	GAAGAC	2 cut(s)	486, 972
BpmI	CTGGAG	3 cut(s)	220, 342, 545
BpuEI	CTTGAG	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	258, 524
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	4 cut(s)	351, 381, 660, 690
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 742
Bse1I	ACTGG	2 cut(s)	348, 689
BseBI	CCWGG	3 cut(s)	260, 525, 563
BseDI	CCNNGG	2 cut(s)	258, 524
BseGI	GGATG	4 cut(s)	345, 475, 594, 877
BseLI	CCNNNNNNNGG	2 cut(s)	465, 742
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	2 cut(s)	348, 689
BseRI	GAGGAG	2 cut(s)	103, 290
BseXI	GCAGC	1 cut(s)	683
BshFI	GGCC	1 cut(s)	834
BshNI	GGYRCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	870
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	465, 742
BsnI	GGCC	1 cut(s)	834
Bsp1286I	GDGCHC	1 cut(s)	870
Bsp1407I	TGTACA	2 cut(s)	396, 885
Bsp143I	GATC	3 cut(s)	454, 495, 899
BspACI	CCGC	2 cut(s)	67, 371
BspANI	GGCC	1 cut(s)	834
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	346, 687
BspPI	GGATC	3 cut(s)	449, 490, 907
BspQI	GCTCTTC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	344
BsrGI	TGTACA	2 cut(s)	396, 885
BsrI	ACTGG	2 cut(s)	348, 689
BssECI	CCNNGG	2 cut(s)	258, 524
BssMI	GATC	3 cut(s)	454, 495, 899
Bst2UI	CCWGG	3 cut(s)	260, 525, 563
Bst4CI	ACNGT	2 cut(s)	363, 554
Bst6I	CTCTTC	1 cut(s)	46
BstAUI	TGTACA	2 cut(s)	396, 885
BstC8I	GCNNGC	3 cut(s)	99, 383, 422
BstDEI	CTNAG	1 cut(s)	582
BstENI	CCTNNNNNAGG	1 cut(s)	463
BstF5I	GGATG	4 cut(s)	345, 475, 594, 877
BstKTI	GATC	3 cut(s)	457, 498, 902
BstMBI	GATC	3 cut(s)	454, 495, 899
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	3 cut(s)	260, 525, 563
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	3 cut(s)	258, 523, 561
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	683
BstV2I	GAAGAC	2 cut(s)	486, 972
BstX2I	RGATCY	2 cut(s)	495, 899
BstYI	RGATCY	2 cut(s)	495, 899
BsuRI	GGCC	1 cut(s)	834
BtrI	CACGTC	1 cut(s)	853
BtsCI	GGATG	4 cut(s)	345, 475, 594, 877
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	4 cut(s)	34, 312, 559, 891
Cac8I	GCNNGC	3 cut(s)	99, 383, 422
Csp6I	GTAC	3 cut(s)	397, 677, 886
CviAII	CATG	3 cut(s)	173, 421, 599
CviQI	GTAC	3 cut(s)	397, 677, 886
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	3 cut(s)	456, 497, 901
DpnII	GATC	3 cut(s)	454, 495, 899
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	56
Eco147I	AGGCCT	1 cut(s)	834
Eco57I	CTGAAG	2 cut(s)	915, 966
EcoNI	CCTNNNNNAGG	1 cut(s)	463
EcoRI	GAATTC	1 cut(s)	62
EcoRII	CCWGG	3 cut(s)	258, 523, 561
FaeI	CATG	3 cut(s)	176, 424, 602
FaiI	YATR	9 cut(s)	174, 216, 353, 408, 422, 492, 600, 720, 965
FatI	CATG	3 cut(s)	172, 420, 598
FauI	CCCGC	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	672
FokI	GGATG	4 cut(s)	352, 482, 581, 864
Fsp4HI	GCNGC	1 cut(s)	672
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	672
GsuI	CTGGAG	3 cut(s)	220, 342, 545
HaeIII	GGCC	1 cut(s)	834
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	3 cut(s)	176, 424, 602
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HinfI	GANTC	7 cut(s)	278, 310, 482, 542, 558, 602, 722
HpaI	GTTAAC	1 cut(s)	823
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	4 cut(s)	550, 557, 823, 886
Hpy188I	TCNGA	3 cut(s)	61, 583, 737
Hpy188III	TCNNGA	3 cut(s)	627, 743, 984
Hpy8I	GTNNAC	4 cut(s)	550, 557, 823, 886
HpyAV	CCTTC	6 cut(s)	427, 523, 634, 824, 881, 890
HpyCH4III	ACNGT	2 cut(s)	363, 554
HpyCH4IV	ACGT	2 cut(s)	518, 852
HpyCH4V	TGCA	7 cut(s)	4, 97, 230, 392, 594, 608, 769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	2 cut(s)	518, 852
Hsp92II	CATG	3 cut(s)	176, 424, 602
KspAI	GTTAAC	1 cut(s)	823
Kzo9I	GATC	3 cut(s)	454, 495, 899
LguI	GCTCTTC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	1 cut(s)	683
LweI	GCATC	2 cut(s)	220, 603
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	2 cut(s)	518, 852
MaeIII	GTNAC	3 cut(s)	151, 841, 919
MalI	GATC	3 cut(s)	456, 497, 901
MboI	GATC	3 cut(s)	454, 495, 899
MboII	GAAGA	7 cut(s)	20, 23, 33, 275, 305, 491, 972
MflI	RGATCY	2 cut(s)	495, 899
MhlI	GDGCHC	1 cut(s)	870
MluCI	AATT	6 cut(s)	62, 125, 191, 196, 225, 512
MlyI	GAGTC	4 cut(s)	287, 476, 552, 731
MmeI	TCCRAC	1 cut(s)	107
MseI	TTAA	5 cut(s)	377, 510, 648, 662, 822
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	3 cut(s)	260, 525, 563
MvaI	CCWGG	3 cut(s)	260, 525, 563
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	3 cut(s)	454, 495, 899
NlaIII	CATG	3 cut(s)	176, 424, 602
NlaIV	GGNNCC	2 cut(s)	346, 687
NmuCI	GTSAC	1 cut(s)	919
NspI	RCATGY	1 cut(s)	424
PaeI	GCATGC	1 cut(s)	424
PceI	AGGCCT	1 cut(s)	834
PciSI	GCTCTTC	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	310, 542, 602
PkrI	GCNGC	1 cut(s)	673
PleI	GAGTC	4 cut(s)	286, 476, 552, 730
PpsI	GAGTC	4 cut(s)	286, 476, 552, 730
Psp6I	CCWGG	3 cut(s)	258, 523, 561
PspGI	CCWGG	3 cut(s)	258, 523, 561
PspN4I	GGNNCC	2 cut(s)	346, 687
PsrI	GAACNNNNNNTAC	2 cut(s)	669, 701
PsuI	RGATCY	2 cut(s)	495, 899
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	3 cut(s)	398, 678, 887
RsaNI	GTAC	3 cut(s)	397, 677, 886
RseI	CAYNNNNRTG	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	5 cut(s)	377, 510, 648, 662, 822
SatI	GCNGC	1 cut(s)	672
Sau3AI	GATC	3 cut(s)	454, 495, 899
SchI	GAGTC	4 cut(s)	287, 476, 552, 731
ScrFI	CCNGG	3 cut(s)	260, 525, 563
SduI	GDGCHC	1 cut(s)	870
SfaNI	GCATC	2 cut(s)	220, 603
SfcI	CTRYAG	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
SphI	GCATGC	1 cut(s)	424
Sse9I	AATT	6 cut(s)	62, 125, 191, 196, 225, 512
SseBI	AGGCCT	1 cut(s)	834
SsiI	CCGC	2 cut(s)	67, 371
SspI	AATATT	1 cut(s)	957
SspMI	CTAG	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	834
StyD4I	CCNGG	3 cut(s)	258, 523, 561
TaaI	ACNGT	2 cut(s)	363, 554
TaiI	ACGT	2 cut(s)	521, 855
TasI	AATT	6 cut(s)	62, 125, 191, 196, 225, 512
TatI	WGTACW	3 cut(s)	396, 676, 885
TfiI	GAWTC	3 cut(s)	310, 542, 602
Tru1I	TTAA	5 cut(s)	377, 510, 648, 662, 822
Tru9I	TTAA	5 cut(s)	377, 510, 648, 662, 822
TscAI	CASTG	4 cut(s)	41, 312, 559, 898
TseFI	GTSAC	1 cut(s)	919
TseI	GCWGC	1 cut(s)	671
Tsp45I	GTSAC	1 cut(s)	919
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	4 cut(s)	41, 312, 559, 898
XagI	CCTNNNNNAGG	1 cut(s)	463
XapI	RAATTY	2 cut(s)	62, 512
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.