Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003823.1

Orthogroup ID

OG0014986

Physical Location & Seq

Genomic Coordinates Reverse (-)

12161 .. 24227

Gene Structure 12067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003823.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atgggaagcagcagcaagccgttgggacccacaggggagttcttcaggagaagggacgagtggaggaagcacccgatgctttcgaatcagctccgccacgccactcccggcctcggcatcgctctggtggccttcggcgtctacttgattggctgctcagcaagaggaatgaagtatggagtttctcatctttcagtgccccctttctgcttctattggtggccttcggcgtctacttggtcggcgagcagttctacaaccgcgtcatctctcctccttcttctcactcctcctcctcttcctcttctcactgatgaggatgaggaggattcattcaatcaatctatttcagattggctgctcagcaagaggaatgaagtatggagtttctcatctttcagtgccccctttctgctgctgatggggctcttggttcatgcacttggcttcaccctctctgcttcttcttcttcttcttcttcttcactgctcttctcaaatgacaacctccgaattcggccaatctcacactccaacctacgatttgcaggtcatcaattcaatttcaggggaaagcatcataaggctagaattgcaacctccagcttcacttgtttctctgcccaggaagataaaccggaggagtctgtagtgaaagagaaaagcgtgtcagtgattcttttggctggaggcaagggtaaaaggatgggtgccagtatgccgaaacagtatctcccgcttttaagccagcctattgcattgtacagcttctacactttctcacgcatgcctcaagtgaaggaaatcattgtagtttgtgatccctcctacagggatgtttttgaagactccaagcataagatccacacagaacttaaattcacgttgcctgggaaggaaagacaagattctgtttacagtggactccaggctattgatttgacctctgagcttgtttgcatccatgattctgcaagacctctggtatcatcaggagatgttgagaaggttcttaaagatggttggttaaatggagcagctgtacttggggttccagtaaaagcgaccatcaaagaggcaaactatgagtcttttgtagtccgaactctggacaggagaacactttgggaaatgcagacaccacaggtcatcaaacctgacttgctcaaaaagggctttgaacttgttaacagagaaggccttgaagttactgatgacgtgtctattgttgagcaccttccacatcctgtgtacatcactgaaggatcttacaccaacatcaaggtcacaacgccagatgatttattactcgcagaaagaatattgagtatggacactaaaaagtcttcaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046490 GO:0050518 GO:0070567 GO:0071704 GO:0090407 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

IspD

Protein Analysis

451

Amino Acids

50.11

Weight (kDa)

8.15

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02500 AT2G02500
fragaria_vesca	FvH4_5g27480
malus_domestica	MD08G1249400.v1.1 MD15G1444200.v1.1
prunus_persica	Prupe.1G586600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218881
rosa_laevigata	RLG00000002347
rosa_multiflora	Rmu_sc0003823.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240430
rosa_rugosa	Rorug07G0179400
rosa_samantha	Rh7AG322700 Rh7BG313800 Rh7CG339500 Rh7DG319900
rosa_wichuraiana	Rw7G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	710
AccI	GTMKAC	2 cut(s)	141, 233
AccII	CGCG	1 cut(s)	263
AciI	CCGC	3 cut(s)	94, 261, 737
AclWI	GGATC	3 cut(s)	815, 856, 1273
AcoI	YGGCCR	1 cut(s)	518
AcsI	RAATTY	2 cut(s)	513, 878
AcuI	CTGAAG	3 cut(s)	28, 1281, 1332
AcyI	GRCGYC	2 cut(s)	138, 230
AfaI	GTAC	3 cut(s)	764, 1044, 1253
AfiI	CCNNNNNNNGG	3 cut(s)	113, 831, 1108
AflIII	ACRYGT	1 cut(s)	1218
AgsI	TTSAA	5 cut(s)	337, 562, 845, 1181, 1205
AjiI	CACGTC	1 cut(s)	1219
AjnI	CCWGG	3 cut(s)	624, 889, 927
AluBI	AGCT	5 cut(s)	91, 606, 768, 952, 1040
AluI	AGCT	5 cut(s)	91, 606, 768, 952, 1040
Alw21I	GWGCWC	1 cut(s)	1236
AlwI	GGATC	3 cut(s)	815, 856, 1273
AoxI	GGCC	5 cut(s)	109, 129, 221, 518, 1198
ApeKI	GCWGC	6 cut(s)	9, 12, 153, 358, 415, 1037
ApoI	RAATTY	2 cut(s)	513, 878
ArsI	GACNNNNNNTTYG	2 cut(s)	1073, 1105
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	442
AsuII	TTCGAA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	26
BaeGI	GKGCMC	2 cut(s)	201, 406
BanI	GGYRCC	1 cut(s)	710
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	2 cut(s)	852, 1338
Bbv12I	GWGCWC	1 cut(s)	1236
BbvI	GCAGC	6 cut(s)	21, 24, 140, 345, 402, 1049
BccI	CCATC	4 cut(s)	415, 700, 1013, 1076
BceAI	ACGGC	1 cut(s)	4
BciT130I	CCWGG	3 cut(s)	626, 891, 929
BcnI	CCSGG	1 cut(s)	108
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	2 cut(s)	648, 829
BfuAI	ACCTGC	1 cut(s)	539
BisI	GCNGC	6 cut(s)	10, 13, 154, 359, 416, 1038
BlpI	GCTNAGC	2 cut(s)	157, 362
BlsI	GCNGC	6 cut(s)	11, 14, 155, 360, 417, 1039
Bme1390I	CCNGG	4 cut(s)	108, 626, 891, 929
Bme18I	GGWCC	1 cut(s)	26
BmgBI	CACGTC	1 cut(s)	1219
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	4 cut(s)	27, 28, 712, 1053
BmrFI	CCNGG	4 cut(s)	108, 626, 891, 929
BmsI	GCATC	4 cut(s)	66, 126, 586, 969
BpiI	GAAGAC	2 cut(s)	852, 1338
BpmI	CTGGAG	3 cut(s)	586, 708, 911
Bpu1102I	GCTNAGC	2 cut(s)	157, 362
Bpu14I	TTCGAA	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	777
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	2 cut(s)	138, 230
BsaJI	CCNNGG	3 cut(s)	112, 624, 890
BsaWI	WCCGGW	1 cut(s)	637
BsaXI	ACNNNNNCTCC	6 cut(s)	277, 307, 717, 747, 1026, 1056
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 831, 1108
Bse1I	ACTGG	2 cut(s)	714, 1055
BseBI	CCWGG	3 cut(s)	626, 891, 929
BseDI	CCNNGG	3 cut(s)	112, 624, 890
BseGI	GGATG	5 cut(s)	325, 711, 841, 960, 1243
BseLI	CCNNNNNNNGG	3 cut(s)	113, 831, 1108
BseMII	CTCAG	3 cut(s)	171, 376, 939
BseNI	ACTGG	2 cut(s)	714, 1055
BseRI	GAGGAG	6 cut(s)	263, 279, 282, 285, 338, 656
BseSI	GKGCMC	2 cut(s)	201, 406
BseXI	GCAGC	6 cut(s)	21, 24, 140, 345, 402, 1049
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	5 cut(s)	111, 131, 223, 520, 1200
BshNI	GGYRCC	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	1236
BsiSI	CCGG	2 cut(s)	108, 638
BslFI	GGGAC	2 cut(s)	39, 68
BslI	CCNNNNNNNGG	3 cut(s)	113, 831, 1108
BsmFI	GGGAC	2 cut(s)	39, 68
BsnI	GGCC	5 cut(s)	111, 131, 223, 520, 1200
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	4 cut(s)	201, 406, 429, 1236
Bsp1407I	TGTACA	2 cut(s)	762, 1251
Bsp143I	GATC	3 cut(s)	820, 861, 1265
Bsp1720I	GCTNAGC	2 cut(s)	157, 362
BspACI	CCGC	3 cut(s)	94, 261, 737
BspANI	GGCC	5 cut(s)	111, 131, 223, 520, 1200
BspCNI	CTCAG	3 cut(s)	170, 375, 940
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	4 cut(s)	27, 28, 712, 1053
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	3 cut(s)	815, 856, 1273
BspQI	GCTCTTC	1 cut(s)	497
BspT104I	TTCGAA	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	710
BsrGI	TGTACA	2 cut(s)	762, 1251
BsrI	ACTGG	2 cut(s)	714, 1055
BssECI	CCNNGG	3 cut(s)	112, 624, 890
BssMI	GATC	3 cut(s)	820, 861, 1265
BssNI	GRCGYC	2 cut(s)	138, 230
Bst2UI	CCWGG	3 cut(s)	626, 891, 929
Bst4CI	ACNGT	2 cut(s)	729, 920
Bst6I	CTCTTC	3 cut(s)	303, 309, 497
BstACI	GRCGYC	2 cut(s)	138, 230
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstAUI	TGTACA	2 cut(s)	762, 1251
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	4 cut(s)	17, 247, 749, 788
BstDEI	CTNAG	3 cut(s)	157, 362, 948
BstENI	CCTNNNNNAGG	1 cut(s)	829
BstF5I	GGATG	5 cut(s)	325, 711, 841, 960, 1243
BstFNI	CGCG	1 cut(s)	263
BstKTI	GATC	3 cut(s)	823, 864, 1268
BstMBI	GATC	3 cut(s)	820, 861, 1265
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 128, 424, 593
BstNI	CCWGG	3 cut(s)	626, 891, 929
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	4 cut(s)	106, 624, 889, 927
BstSFI	CTRYAG	2 cut(s)	648, 829
BstSLI	GKGCMC	2 cut(s)	201, 406
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	6 cut(s)	21, 24, 140, 345, 402, 1049
BstV2I	GAAGAC	2 cut(s)	852, 1338
BstX2I	RGATCY	2 cut(s)	861, 1265
BstYI	RGATCY	2 cut(s)	861, 1265
BsuRI	GGCC	5 cut(s)	111, 131, 223, 520, 1200
BtgZI	GCGATG	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	1219
BtsCI	GGATG	5 cut(s)	325, 711, 841, 960, 1243
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	7 cut(s)	201, 309, 406, 485, 678, 925, 1257
BveI	ACCTGC	1 cut(s)	539
Cac8I	GCNNGC	4 cut(s)	17, 247, 749, 788
Cfr13I	GGNCC	1 cut(s)	26
CseI	GACGC	3 cut(s)	127, 219, 252
Csp6I	GTAC	3 cut(s)	763, 1043, 1252
CviAII	CATG	3 cut(s)	437, 787, 965
CviQI	GTAC	3 cut(s)	763, 1043, 1252
DdeI	CTNAG	3 cut(s)	157, 362, 948
DpnI	GATC	3 cut(s)	822, 863, 1267
DpnII	GATC	3 cut(s)	820, 861, 1265
EaeI	YGGCCR	1 cut(s)	518
Eam1104I	CTCTTC	3 cut(s)	303, 309, 497
EarI	CTCTTC	3 cut(s)	303, 309, 497
EciI	GGCGGA	1 cut(s)	83
Eco147I	AGGCCT	1 cut(s)	1200
Eco24I	GRGCYC	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	26
Eco57I	CTGAAG	3 cut(s)	28, 1281, 1332
EcoNI	CCTNNNNNAGG	1 cut(s)	829
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	513
EcoRII	CCWGG	3 cut(s)	624, 889, 927
EcoT38I	GRGCYC	1 cut(s)	429
FaeI	CATG	3 cut(s)	440, 790, 968
FaqI	GGGAC	2 cut(s)	39, 68
FatI	CATG	3 cut(s)	436, 786, 964
FauI	CCCGC	1 cut(s)	744
FblI	GTMKAC	2 cut(s)	141, 233
Fnu4HI	GCNGC	6 cut(s)	10, 13, 154, 359, 416, 1038
FokI	GGATG	5 cut(s)	332, 718, 848, 947, 1230
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	6 cut(s)	10, 13, 154, 359, 416, 1038
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	6 cut(s)	10, 13, 154, 359, 416, 1038
GsuI	CTGGAG	3 cut(s)	586, 708, 911
HaeIII	GGCC	5 cut(s)	111, 131, 223, 520, 1200
HapII	CCGG	2 cut(s)	108, 638
HgaI	GACGC	3 cut(s)	127, 219, 252
Hin1I	GRCGYC	2 cut(s)	138, 230
Hin1II	CATG	3 cut(s)	440, 790, 968
HincII	GTYRAC	1 cut(s)	1189
HindII	GTYRAC	1 cut(s)	1189
HinfI	GANTC	9 cut(s)	85, 329, 644, 676, 848, 908, 924, 968, 1088
HpaI	GTTAAC	1 cut(s)	1189
HpaII	CCGG	2 cut(s)	108, 638
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	6 cut(s)	142, 234, 916, 923, 1189, 1252
Hpy188I	TCNGA	4 cut(s)	352, 512, 949, 1103
Hpy188III	TCNNGA	4 cut(s)	46, 993, 1109, 1350
Hpy8I	GTNNAC	6 cut(s)	142, 234, 916, 923, 1189, 1252
HpyCH4III	ACNGT	2 cut(s)	729, 920
HpyCH4IV	ACGT	2 cut(s)	884, 1218
HpyCH4V	TGCA	7 cut(s)	440, 548, 596, 758, 960, 974, 1135
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 128, 424, 593
HpyF3I	CTNAG	3 cut(s)	157, 362, 948
HpySE526I	ACGT	2 cut(s)	884, 1218
Hsp92I	GRCGYC	2 cut(s)	138, 230
Hsp92II	CATG	3 cut(s)	440, 790, 968
KflI	GGGWCCC	1 cut(s)	26
KspAI	GTTAAC	1 cut(s)	1189
Kzo9I	GATC	3 cut(s)	820, 861, 1265
LguI	GCTCTTC	1 cut(s)	497
LmnI	GCTCC	2 cut(s)	96, 1034
Lsp1109I	GCAGC	6 cut(s)	21, 24, 140, 345, 402, 1049
LweI	GCATC	4 cut(s)	66, 126, 586, 969
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	2 cut(s)	884, 1218
MaeIII	GTNAC	2 cut(s)	1207, 1285
MalI	GATC	3 cut(s)	822, 863, 1267
MboI	GATC	3 cut(s)	820, 861, 1265
MflI	RGATCY	2 cut(s)	861, 1265
MhlI	GDGCHC	4 cut(s)	201, 406, 429, 1236
MluCI	AATT	5 cut(s)	513, 557, 562, 591, 878
MlyI	GAGTC	4 cut(s)	653, 842, 918, 1097
MmeI	TCCRAC	1 cut(s)	558
MseI	TTAA	5 cut(s)	743, 876, 1014, 1028, 1188
MspA1I	CMGCKG	1 cut(s)	1040
MspI	CCGG	2 cut(s)	108, 638
MspR9I	CCNGG	4 cut(s)	108, 626, 891, 929
MvaI	CCWGG	3 cut(s)	626, 891, 929
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	4 cut(s)	76, 128, 424, 593
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	3 cut(s)	820, 861, 1265
NlaIII	CATG	3 cut(s)	440, 790, 968
NlaIV	GGNNCC	4 cut(s)	27, 28, 712, 1053
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	1285
NspI	RCATGY	1 cut(s)	790
NspV	TTCGAA	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	790
PceI	AGGCCT	1 cut(s)	1200
PciSI	GCTCTTC	1 cut(s)	497
PfeI	GAWTC	5 cut(s)	85, 329, 676, 908, 968
PkrI	GCNGC	6 cut(s)	11, 14, 155, 360, 417, 1039
PleI	GAGTC	4 cut(s)	652, 842, 918, 1096
PpsI	GAGTC	4 cut(s)	652, 842, 918, 1096
PpuMI	RGGWCCY	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	3 cut(s)	624, 889, 927
PspGI	CCWGG	3 cut(s)	624, 889, 927
PspN4I	GGNNCC	4 cut(s)	27, 28, 712, 1053
PspPI	GGNCC	1 cut(s)	26
PspPPI	RGGWCCY	1 cut(s)	26
PsrI	GAACNNNNNNTAC	2 cut(s)	1035, 1067
PsuI	RGATCY	2 cut(s)	861, 1265
PvuII	CAGCTG	1 cut(s)	1040
RsaI	GTAC	3 cut(s)	764, 1044, 1253
RsaNI	GTAC	3 cut(s)	763, 1043, 1252
SapI	GCTCTTC	1 cut(s)	497
SaqAI	TTAA	5 cut(s)	743, 876, 1014, 1028, 1188
SatI	GCNGC	6 cut(s)	10, 13, 154, 359, 416, 1038
Sau3AI	GATC	3 cut(s)	820, 861, 1265
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	4 cut(s)	653, 842, 918, 1097
ScrFI	CCNGG	4 cut(s)	108, 626, 891, 929
SduI	GDGCHC	4 cut(s)	201, 406, 429, 1236
SfaNI	GCATC	4 cut(s)	66, 126, 586, 969
SfcI	CTRYAG	2 cut(s)	648, 829
SfuI	TTCGAA	1 cut(s)	83
SinI	GGWCC	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	792
SmoI	CTYRAG	1 cut(s)	792
SphI	GCATGC	1 cut(s)	790
Sse9I	AATT	5 cut(s)	513, 557, 562, 591, 878
SseBI	AGGCCT	1 cut(s)	1200
SsiI	CCGC	3 cut(s)	94, 261, 737
SspI	AATATT	1 cut(s)	1323
SspMI	CTAG	1 cut(s)	588
StuI	AGGCCT	1 cut(s)	1200
StyD4I	CCNGG	4 cut(s)	106, 624, 889, 927
TaaI	ACNGT	2 cut(s)	729, 920
TaiI	ACGT	2 cut(s)	887, 1221
TaqI	TCGA	1 cut(s)	83
TasI	AATT	5 cut(s)	513, 557, 562, 591, 878
TatI	WGTACW	3 cut(s)	762, 1042, 1251
TfiI	GAWTC	5 cut(s)	85, 329, 676, 908, 968
Tru1I	TTAA	5 cut(s)	743, 876, 1014, 1028, 1188
Tru9I	TTAA	5 cut(s)	743, 876, 1014, 1028, 1188
TscAI	CASTG	7 cut(s)	201, 316, 406, 492, 678, 925, 1264
TseFI	GTSAC	1 cut(s)	1285
TseI	GCWGC	6 cut(s)	9, 12, 153, 358, 415, 1037
Tsp45I	GTSAC	1 cut(s)	1285
TspDTI	ATGAA	4 cut(s)	185, 321, 390, 425
TspRI	CASTG	7 cut(s)	201, 316, 406, 492, 678, 925, 1264
VpaK11BI	GGWCC	1 cut(s)	26
XagI	CCTNNNNNAGG	1 cut(s)	829
XapI	RAATTY	2 cut(s)	513, 878
XceI	RCATGY	1 cut(s)	790
XmiI	GTMKAC	2 cut(s)	141, 233
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.