Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014986

Physical Location & Seq

Genomic Coordinates Reverse (-)

38138094 .. 38142445

Gene Structure 4352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG319900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCCGAAACAGTATCTCCCGCTTTTAAGCCAGCCTATTGCATTGTACAGCTTCTATACTTTCTCACGCATGCCTCAAGTGAAGGAAATCATTGTAGTTTGTGATCCCTCCTACAGGGATGTTTTTGAAGACTCCAAGCATAAGATCCACACAGAACTTAAATTCACGTTGCCTGGGAAGGAAAGACAAGATTCTGTTTACAGTGGACTCCAGGCTATTGATTTGACCTCTGAGCTTGTTTGCATCCATGATTCTGCAAGACCTCTGGTATCATCAGGAGATGTTGAGAAGGTTCTTAAAGATGGTTGGTTAAATGGAGCAGCTGTACTTGGGGTTCCAGTAAAAGCGACCATCAAAGAGGCAAACTATGAGTCTTTTGTAGTCCGAACTCTGGACAGGAGAACACTTTGGGAAATGCAGACACCACAGGTCATCAAACCTGACTTGCTCAAAAAGGGCTTTGAACTTGTTAACAGGTATGTAAGGATTAATGTCGATTTTGTTGTACAGTGTTCAGTGCAAACTGCTGTAATAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046490 GO:0050518 GO:0070567 GO:0071704 GO:0090407 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

IspD

Protein Analysis

179

Amino Acids

20.37

Weight (kDa)

8.37

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IspD	PF01128	2 - 155	2.2e-31	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02500 AT2G02500
fragaria_vesca	FvH4_5g27480
malus_domestica	MD08G1249400.v1.1 MD15G1444200.v1.1
prunus_persica	Prupe.1G586600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218881
rosa_laevigata	RLG00000002347
rosa_multiflora	Rmu_sc0003823.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240430
rosa_rugosa	Rorug07G0179400
rosa_samantha	Rh7AG322700 Rh7BG313800 Rh7CG339500 Rh7DG319900
rosa_wichuraiana	Rw7G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	2 cut(s)	98, 139
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	3 cut(s)	47, 327, 507
AfiI	CCNNNNNNNGG	2 cut(s)	114, 391
AgsI	TTSAA	2 cut(s)	128, 464
AjnI	CCWGG	2 cut(s)	172, 210
AluBI	AGCT	3 cut(s)	51, 235, 323
AluI	AGCT	3 cut(s)	51, 235, 323
AlwI	GGATC	2 cut(s)	98, 139
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AseI	ATTAAT	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	296, 359
BciT130I	CCWGG	2 cut(s)	174, 212
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	2 cut(s)	174, 212
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	2 cut(s)	174, 212
BmsI	GCATC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 309, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 391
Bse1I	ACTGG	1 cut(s)	338
BseBI	CCWGG	2 cut(s)	174, 212
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	2 cut(s)	124, 243
BseLI	CCNNNNNNNGG	2 cut(s)	114, 391
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	114, 391
Bsp1407I	TGTACA	2 cut(s)	45, 505
Bsp143I	GATC	2 cut(s)	103, 144
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	336
BspPI	GGATC	2 cut(s)	98, 139
BsrGI	TGTACA	2 cut(s)	45, 505
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	103, 144
Bst2UI	CCWGG	2 cut(s)	174, 212
Bst4CI	ACNGT	3 cut(s)	12, 203, 510
BstAUI	TGTACA	2 cut(s)	45, 505
BstC8I	GCNNGC	2 cut(s)	32, 71
BstDEI	CTNAG	1 cut(s)	231
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	124, 243
BstKTI	GATC	2 cut(s)	106, 147
BstMBI	GATC	2 cut(s)	103, 144
BstNI	CCWGG	2 cut(s)	174, 212
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	172, 210
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	124, 243
BtsIMutI	CAGTG	3 cut(s)	208, 515, 522
Cac8I	GCNNGC	2 cut(s)	32, 71
Csp6I	GTAC	3 cut(s)	46, 326, 506
CviAII	CATG	2 cut(s)	70, 248
CviJI	RGCY	7 cut(s)	30, 34, 51, 215, 235, 323, 459
CviKI_1	RGCY	7 cut(s)	30, 34, 51, 215, 235, 323, 459
CviQI	GTAC	3 cut(s)	46, 326, 506
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	105, 146
DpnII	GATC	2 cut(s)	103, 144
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	172, 210
FaeI	CATG	2 cut(s)	73, 251
FaiI	YATR	6 cut(s)	57, 71, 141, 249, 369, 480
FatI	CATG	2 cut(s)	69, 247
FauI	CCCGC	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	2 cut(s)	131, 230
Fsp4HI	GCNGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	194
Hin1II	CATG	2 cut(s)	73, 251
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	5 cut(s)	131, 191, 207, 251, 371
HpaI	GTTAAC	1 cut(s)	472
Hpy166II	GTNNAC	3 cut(s)	199, 206, 472
Hpy188I	TCNGA	2 cut(s)	232, 386
Hpy188III	TCNNGA	2 cut(s)	276, 392
Hpy8I	GTNNAC	3 cut(s)	199, 206, 472
HpyAV	CCTTC	3 cut(s)	76, 172, 283
HpyCH4III	ACNGT	3 cut(s)	12, 203, 510
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	5 cut(s)	41, 243, 257, 418, 520
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	73, 251
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	103, 144
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	252
MaeII	ACGT	1 cut(s)	167
MalI	GATC	2 cut(s)	105, 146
MboI	GATC	2 cut(s)	103, 144
MboII	GAAGA	1 cut(s)	140
MflI	RGATCY	1 cut(s)	144
MluCI	AATT	1 cut(s)	161
MlyI	GAGTC	3 cut(s)	125, 201, 380
MnlI	CCTC	5 cut(s)	84, 118, 238, 273, 352
MseI	TTAA	6 cut(s)	26, 159, 297, 311, 471, 489
MspA1I	CMGCKG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	174, 212
MvaI	CCWGG	2 cut(s)	174, 212
NdeII	GATC	2 cut(s)	103, 144
NlaIII	CATG	2 cut(s)	73, 251
NlaIV	GGNNCC	1 cut(s)	336
NspI	RCATGY	1 cut(s)	73
PaeI	GCATGC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	191, 251
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	3 cut(s)	125, 201, 379
PpsI	GAGTC	3 cut(s)	125, 201, 379
PshBI	ATTAAT	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	172, 210
PspGI	CCWGG	2 cut(s)	172, 210
PspN4I	GGNNCC	1 cut(s)	336
PsrI	GAACNNNNNNTAC	2 cut(s)	318, 350
PsuI	RGATCY	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	3 cut(s)	47, 327, 507
RsaNI	GTAC	3 cut(s)	46, 326, 506
SaqAI	TTAA	6 cut(s)	26, 159, 297, 311, 471, 489
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	2 cut(s)	103, 144
SchI	GAGTC	3 cut(s)	125, 201, 380
ScrFI	CCNGG	2 cut(s)	174, 212
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SphI	GCATGC	1 cut(s)	73
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	172, 210
TaaI	ACNGT	3 cut(s)	12, 203, 510
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	495
TasI	AATT	1 cut(s)	161
TatI	WGTACW	3 cut(s)	45, 325, 505
TfiI	GAWTC	2 cut(s)	191, 251
Tru1I	TTAA	6 cut(s)	26, 159, 297, 311, 471, 489
Tru9I	TTAA	6 cut(s)	26, 159, 297, 311, 471, 489
TscAI	CASTG	3 cut(s)	208, 515, 522
TseI	GCWGC	1 cut(s)	320
TspRI	CASTG	3 cut(s)	208, 515, 522
VspI	ATTAAT	1 cut(s)	489
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.