Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014986

Physical Location & Seq

Genomic Coordinates Forward (+)

54459760 .. 54463978

Gene Structure 4219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1444200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCTTGCATGCTTCTATTGTCTCTCAGGCAAACAATTCAGTTTCAGGCACAAGGCTAAGGCTAAGGCTAAGGCCCTGCATACTAGAATCTCTGCGAAAGTTGCCAATGAAGATAAACCAGAGACTAGATCAATAGTGAAAGAGAAGAGCGTGTCGGTGATTCTTTTGGCTGGAGGGCAGGGCAAAAGGATGGGTGCCAGCTTGCCAAAGCAATATCTTCCCCTTTTAGGCCAGCCAATTGCATTATACAGCTTCTACACTTTCTCCCAAATGATTGAAGTCAAGGAAATAATTGTAGTTTGTGATCCCTCCTACAAGGATGTTTTTGAAGACGCCAAACATAAGATCCAGAAGGAACTTAAATTCACACTACCAGGGAAGGAAAGACAAGATTCGGTTTACAGTGGACTCCAGGCAATTGATTTGACCTCGGAGCTTGTTTGTATCCATGATTCTGCTAGACCTCTGGTAGCATCAGGAGATGCAGCAAAGGTTCTCAAAGATGGCTGCTTAAATGGTGCAGCCGTACTTGGTGTTCCAGTAAAAGCTACAATCAAAGAGGCAAACAGTGAATCTTTTGTAGTCAAAACCCTTGACAGGAGAACACTTTGGGAAATGCAGACACCCCAGGTCATCAAACCTGAGTTGCTCAGAGAGGGTTTTGAGCTTGTCAATAGAGAAGGGCTTGAAGTGACTGACGACGTGTCTATTGTTGAGCACCTTAAGCATCCCGTGTACATCACTCAAGGATCTTATACCAACATCAAGGTGACAACGCCGGATGATTTATTACTTGCGGAAAGAATACTGAGTATGAACTCGGGACAGTCTTCTCCCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046490 GO:0050518 GO:0070567 GO:0071704 GO:0090407 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

IspD

Protein Analysis

281

Amino Acids

30.97

Weight (kDa)

8.46

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IspD	PF01128	51 - 271	5.5e-56	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NTP_transf_3	PF12804	53 - 146	8.3e-09	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02500 AT2G02500
fragaria_vesca	FvH4_5g27480
malus_domestica	MD08G1249400.v1.1 MD15G1444200.v1.1
prunus_persica	Prupe.1G586600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218881
rosa_laevigata	RLG00000002347
rosa_multiflora	Rmu_sc0003823.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240430
rosa_rugosa	Rorug07G0179400
rosa_samantha	Rh7AG322700 Rh7BG313800 Rh7CG339500 Rh7DG319900
rosa_wichuraiana	Rw7G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AciI	CCGC	1 cut(s)	797
AclWI	GGATC	3 cut(s)	299, 340, 757
AcsI	RAATTY	1 cut(s)	362
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	2 cut(s)	528, 737
AfiI	CCNNNNNNNGG	2 cut(s)	227, 597
AflII	CTTAAG	1 cut(s)	722
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	3 cut(s)	278, 329, 689
AhdI	GACNNNNNGTC	1 cut(s)	703
AjiI	CACGTC	1 cut(s)	703
AjnI	CCWGG	3 cut(s)	373, 411, 627
AluBI	AGCT	5 cut(s)	201, 252, 436, 548, 667
AluI	AGCT	5 cut(s)	201, 252, 436, 548, 667
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	2 cut(s)	26, 116
AlwI	GGATC	3 cut(s)	299, 340, 757
Ama87I	CYCGRG	1 cut(s)	820
AoxI	GGCC	2 cut(s)	72, 229
ApeKI	GCWGC	3 cut(s)	485, 507, 521
ApoI	RAATTY	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	169, 781
AvaI	CYCGRG	1 cut(s)	820
BanI	GGYRCC	1 cut(s)	194
BbsI	GAAGAC	2 cut(s)	336, 822
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	3 cut(s)	494, 497, 533
BccI	CCATC	2 cut(s)	184, 497
BceAI	ACGGC	1 cut(s)	509
BciT130I	CCWGG	3 cut(s)	375, 413, 629
BciVI	GTATCC	1 cut(s)	455
BcoDI	GTCTC	2 cut(s)	26, 116
BfaI	CTAG	3 cut(s)	84, 126, 459
BfrI	CTTAAG	1 cut(s)	722
BfuI	GTATCC	1 cut(s)	455
BisI	GCNGC	3 cut(s)	486, 508, 522
BlsI	GCNGC	3 cut(s)	487, 509, 523
Bme1390I	CCNGG	3 cut(s)	375, 413, 629
BmeRI	GACNNNNNGTC	1 cut(s)	703
BmeT110I	CYCGRG	1 cut(s)	820
BmgBI	CACGTC	1 cut(s)	703
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	3 cut(s)	375, 413, 629
BmsI	GCATC	3 cut(s)	472, 482, 736
BpiI	GAAGAC	2 cut(s)	336, 822
BpmI	CTGGAG	2 cut(s)	192, 395
Bpu10I	CCTNAGC	3 cut(s)	57, 63, 69
BpuEI	CTTGAG	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	374, 429, 627
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 597
Bse1I	ACTGG	1 cut(s)	539
BseBI	CCWGG	3 cut(s)	375, 413, 629
BseDI	CCNNGG	3 cut(s)	374, 429, 627
BseGI	GGATG	4 cut(s)	195, 325, 727, 787
BseLI	CCNNNNNNNGG	2 cut(s)	227, 597
BseMII	CTCAG	4 cut(s)	39, 633, 664, 800
BseNI	ACTGG	1 cut(s)	539
BseXI	GCAGC	3 cut(s)	494, 497, 533
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	2 cut(s)	74, 231
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	720
BsiHKCI	CYCGRG	1 cut(s)	820
BsiSI	CCGG	1 cut(s)	779
BslFI	GGGAC	1 cut(s)	837
BslI	CCNNNNNNNGG	2 cut(s)	227, 597
BsmAI	GTCTC	2 cut(s)	26, 116
BsmFI	GGGAC	1 cut(s)	837
BsnI	GGCC	2 cut(s)	74, 231
BsoBI	CYCGRG	1 cut(s)	820
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp1407I	TGTACA	1 cut(s)	735
Bsp143I	GATC	4 cut(s)	128, 304, 345, 749
BspACI	CCGC	1 cut(s)	797
BspANI	GGCC	2 cut(s)	74, 231
BspCNI	CTCAG	4 cut(s)	38, 634, 663, 801
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	3 cut(s)	299, 340, 757
BspQI	GCTCTTC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	194
BspTI	CTTAAG	1 cut(s)	722
BsrGI	TGTACA	1 cut(s)	735
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	3 cut(s)	374, 429, 627
BssMI	GATC	4 cut(s)	128, 304, 345, 749
BssNI	GRCGYC	1 cut(s)	333
Bst2UI	CCWGG	3 cut(s)	375, 413, 629
Bst4CI	ACNGT	3 cut(s)	404, 569, 828
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	333
BstAFI	CTTAAG	1 cut(s)	722
BstAUI	TGTACA	1 cut(s)	735
BstC8I	GCNNGC	5 cut(s)	6, 10, 199, 203, 233
BstDEI	CTNAG	7 cut(s)	25, 57, 63, 69, 642, 650, 809
BstF5I	GGATG	4 cut(s)	195, 325, 727, 787
BstKTI	GATC	4 cut(s)	131, 307, 348, 752
BstMAI	GTCTC	2 cut(s)	26, 116
BstMBI	GATC	4 cut(s)	128, 304, 345, 749
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 724
BstNI	CCWGG	3 cut(s)	375, 413, 629
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	3 cut(s)	373, 411, 627
BstV1I	GCAGC	3 cut(s)	494, 497, 533
BstV2I	GAAGAC	2 cut(s)	336, 822
BstX2I	RGATCY	2 cut(s)	345, 749
BstYI	RGATCY	2 cut(s)	345, 749
BsuI	GTATCC	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	74, 231
BtrI	CACGTC	1 cut(s)	703
BtsCI	GGATG	4 cut(s)	195, 325, 727, 787
BtsIMutI	CAGTG	2 cut(s)	409, 574
Cac8I	GCNNGC	5 cut(s)	6, 10, 199, 203, 233
Cfr13I	GGNCC	1 cut(s)	73
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	527, 736
CviAII	CATG	2 cut(s)	9, 449
CviQI	GTAC	2 cut(s)	527, 736
DdeI	CTNAG	7 cut(s)	25, 57, 63, 69, 642, 650, 809
DpnI	GATC	4 cut(s)	130, 306, 347, 751
DpnII	GATC	4 cut(s)	128, 304, 345, 749
DriI	GACNNNNNGTC	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	140
Eam1105I	GACNNNNNGTC	1 cut(s)	703
EarI	CTCTTC	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	820
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	3 cut(s)	373, 411, 627
FaeI	CATG	2 cut(s)	12, 452
FaiI	YATR	7 cut(s)	10, 81, 247, 342, 450, 756, 815
FaqI	GGGAC	1 cut(s)	837
FatI	CATG	2 cut(s)	8, 448
Fnu4HI	GCNGC	3 cut(s)	486, 508, 522
FokI	GGATG	4 cut(s)	202, 332, 714, 794
Fsp4HI	GCNGC	3 cut(s)	486, 508, 522
FspBI	CTAG	3 cut(s)	84, 126, 459
GluI	GCNGC	3 cut(s)	486, 508, 522
GsuI	CTGGAG	2 cut(s)	192, 395
HaeIII	GGCC	2 cut(s)	74, 231
HapII	CCGG	1 cut(s)	779
HgaI	GACGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	12, 452
HinfI	GANTC	6 cut(s)	87, 160, 392, 408, 452, 572
HpaII	CCGG	1 cut(s)	779
HphI	GGTGA	2 cut(s)	169, 781
Hpy166II	GTNNAC	3 cut(s)	400, 407, 736
Hpy188I	TCNGA	2 cut(s)	433, 653
Hpy188III	TCNNGA	4 cut(s)	349, 477, 822, 836
Hpy8I	GTNNAC	3 cut(s)	400, 407, 736
Hpy99I	CGWCG	1 cut(s)	704
HpyAV	CCTTC	3 cut(s)	346, 373, 674
HpyCH4III	ACNGT	3 cut(s)	404, 569, 828
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	6 cut(s)	8, 79, 242, 485, 521, 619
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 724
HpyF3I	CTNAG	7 cut(s)	25, 57, 63, 69, 642, 650, 809
HpySE526I	ACGT	1 cut(s)	702
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	12, 452
Kzo9I	GATC	4 cut(s)	128, 304, 345, 749
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	3 cut(s)	494, 497, 533
LweI	GCATC	3 cut(s)	472, 482, 736
MaeI	CTAG	3 cut(s)	84, 126, 459
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	691, 769
MalI	GATC	4 cut(s)	130, 306, 347, 751
MboI	GATC	4 cut(s)	128, 304, 345, 749
MboII	GAAGA	5 cut(s)	122, 157, 209, 341, 822
MfeI	CAATTG	2 cut(s)	237, 417
MflI	RGATCY	2 cut(s)	345, 749
MhlI	GDGCHC	1 cut(s)	720
MluCI	AATT	5 cut(s)	35, 237, 291, 362, 417
MlyI	GAGTC	1 cut(s)	402
MnlI	CCTC	6 cut(s)	167, 319, 439, 474, 553, 649
MseI	TTAA	3 cut(s)	360, 512, 723
MslI	CAYNNNNRTG	1 cut(s)	767
MspCI	CTTAAG	1 cut(s)	722
MspI	CCGG	1 cut(s)	779
MspR9I	CCNGG	3 cut(s)	375, 413, 629
MunI	CAATTG	2 cut(s)	237, 417
MvaI	CCWGG	3 cut(s)	375, 413, 629
MwoI	GCNNNNNNNGC	2 cut(s)	101, 724
NdeII	GATC	4 cut(s)	128, 304, 345, 749
NlaIII	CATG	2 cut(s)	12, 452
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	2 cut(s)	691, 769
NspI	RCATGY	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	140
PfeI	GAWTC	5 cut(s)	87, 160, 392, 452, 572
PkrI	GCNGC	3 cut(s)	487, 509, 523
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
Psp6I	CCWGG	3 cut(s)	373, 411, 627
PspGI	CCWGG	3 cut(s)	373, 411, 627
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	73
PsrI	GAACNNNNNNTAC	2 cut(s)	519, 551
PsuI	RGATCY	2 cut(s)	345, 749
RsaI	GTAC	2 cut(s)	528, 737
RsaNI	GTAC	2 cut(s)	527, 736
RseI	CAYNNNNRTG	1 cut(s)	767
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	360, 512, 723
SatI	GCNGC	3 cut(s)	486, 508, 522
Sau3AI	GATC	4 cut(s)	128, 304, 345, 749
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	402
ScrFI	CCNGG	3 cut(s)	375, 413, 629
SduI	GDGCHC	1 cut(s)	720
SfaNI	GCATC	3 cut(s)	472, 482, 736
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	2 cut(s)	722, 744
SmoI	CTYRAG	2 cut(s)	722, 744
SphI	GCATGC	1 cut(s)	12
Sse9I	AATT	5 cut(s)	35, 237, 291, 362, 417
SsiI	CCGC	1 cut(s)	797
SspMI	CTAG	3 cut(s)	84, 126, 459
StyD4I	CCNGG	3 cut(s)	373, 411, 627
TaaI	ACNGT	3 cut(s)	404, 569, 828
TaiI	ACGT	1 cut(s)	705
TasI	AATT	5 cut(s)	35, 237, 291, 362, 417
TatI	WGTACW	1 cut(s)	735
TfiI	GAWTC	5 cut(s)	87, 160, 392, 452, 572
Tru1I	TTAA	3 cut(s)	360, 512, 723
Tru9I	TTAA	3 cut(s)	360, 512, 723
TscAI	CASTG	2 cut(s)	409, 574
TseFI	GTSAC	2 cut(s)	691, 769
TseI	GCWGC	3 cut(s)	485, 507, 521
Tsp45I	GTSAC	2 cut(s)	691, 769
TspDTI	ATGAA	2 cut(s)	123, 830
TspRI	CASTG	2 cut(s)	409, 574
Vha464I	CTTAAG	1 cut(s)	722
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	1 cut(s)	12
XspI	CTAG	3 cut(s)	84, 126, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.