Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0014986

Physical Location & Seq

Genomic Coordinates Reverse (-)

30333465 .. 30337465

Gene Structure 4001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG313800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGTCTCTTGGTCCATGCACTTGGCTTCACCCTCTCTGCTTCTTCTTCTTCTTCACTGCTCTTCTCAAATGACAACCTCCGAATTCCGCCAATCTCACACTCCAACCTACGATTTGCAGGTCATCACTTCAATTTCAGGGACAAGCATCGTAAGCCTAGAATTGCAACCCCCAGCTTCACTTGTTTCTCTGCCCAGGAAGATAAACCGGAGGAGTCTGTAGTAGTAGTGAAAGAGAAAAGCGTGTCAGTGATTCTTTTGGCTGGGGGGAAGGGTAAAAGGATGGGTGCCAGTATGCCGAAACAGTATCTCCCGCTTTTAAGCCAGCCTATTGCATTGTACAGCTTCTATACTTTCTCACGCATGCCTCAAGTGAAGGAAATCATTGTAGTTTGTGATCCCTCCTACAGGGATGTTTTTGAAGACTCCAAGCATAAGATCCACACGGACCTTAAATTCACGTTGCCTGGGAAGGAAAGACAAGATTCTGTTTACAGTGGACTCCAGGCTATTGATTTGACCTCTGAGCTTGTTTGCATCCATGATTCTGCAAGACCTCTGGTATCATTAGGAGATGTTGAGAAGGTTCTTAAAGATGGTTGGTTAAATGGAGCAGCTGTACTTGGGGTTCCAGTAAAAGCGACCATCAAAGAGGCAAACTATGAGTCTTTTGTAGTCCGAACTCTGGACAGGAGAACACTTTGGGAAATGCAGACACCACAGGTTATCAGACCTGAGTTGCTCAAAAAGGGCTTTGAACTTGTTAACAGAGAAGGCCTTGAAGTTACTGATGACGTGTCTATTGTTGAGCACCTTCCACATCCTGTGTACATCACTGAAGGATCTTACACCAACATCAAGGTCACAACGCCAGATGATTTATTACTCGCAGAAAGAATATTGAGTATGGACACTAAAAAGTCTTCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046490 GO:0050518 GO:0070567 GO:0071704 GO:0090407 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

IspD

Protein Analysis

310

Amino Acids

34.61

Weight (kDa)

7.75

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IspD	PF01128	82 - 302	3.9e-55	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NTP_transf_3	PF12804	84 - 180	1.4e-08	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02500 AT2G02500
fragaria_vesca	FvH4_5g27480
malus_domestica	MD08G1249400.v1.1 MD15G1444200.v1.1
prunus_persica	Prupe.1G586600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218881
rosa_laevigata	RLG00000002347
rosa_multiflora	Rmu_sc0003823.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240430
rosa_rugosa	Rorug07G0179400
rosa_samantha	Rh7AG322700 Rh7BG313800 Rh7CG339500 Rh7DG319900
rosa_wichuraiana	Rw7G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	2 cut(s)	89, 314
AclWI	GGATC	3 cut(s)	392, 433, 850
AcsI	RAATTY	2 cut(s)	84, 455
AcuI	CTGAAG	2 cut(s)	858, 909
AfaI	GTAC	3 cut(s)	341, 621, 830
AfiI	CCNNNNNNNGG	2 cut(s)	408, 685
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	4 cut(s)	133, 422, 758, 782
AjiI	CACGTC	1 cut(s)	796
AjnI	CCWGG	3 cut(s)	195, 466, 504
AluBI	AGCT	4 cut(s)	177, 345, 529, 617
AluI	AGCT	4 cut(s)	177, 345, 529, 617
Alw21I	GWGCWC	1 cut(s)	813
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	3 cut(s)	392, 433, 850
AoxI	GGCC	1 cut(s)	775
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	2 cut(s)	84, 455
ArsI	GACNNNNNNTTYG	2 cut(s)	650, 682
AspS9I	GGNCC	2 cut(s)	13, 448
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	13, 448
BanI	GGYRCC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	429, 915
Bbv12I	GWGCWC	1 cut(s)	813
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	3 cut(s)	277, 590, 653
BciT130I	CCWGG	3 cut(s)	197, 468, 506
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	2 cut(s)	219, 406
BfuAI	ACCTGC	1 cut(s)	110
BisI	GCNGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	616
Bme1390I	CCNGG	3 cut(s)	197, 468, 506
Bme18I	GGWCC	2 cut(s)	13, 448
BmgBI	CACGTC	1 cut(s)	796
BmgT120I	GGNCC	2 cut(s)	13, 448
BmiI	GGNNCC	2 cut(s)	289, 630
BmrFI	CCNGG	3 cut(s)	197, 468, 506
BmsI	GCATC	2 cut(s)	157, 546
BpiI	GAAGAC	2 cut(s)	429, 915
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	195, 467
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	4 cut(s)	294, 324, 603, 633
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 685
Bse1I	ACTGG	2 cut(s)	291, 632
BseBI	CCWGG	3 cut(s)	197, 468, 506
BseDI	CCNNGG	2 cut(s)	195, 467
BseGI	GGATG	4 cut(s)	288, 418, 537, 820
BseLI	CCNNNNNNNGG	2 cut(s)	408, 685
BseMII	CTCAG	2 cut(s)	516, 726
BseNI	ACTGG	2 cut(s)	291, 632
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	626
BseYI	CCCAGC	2 cut(s)	173, 263
BshFI	GGCC	1 cut(s)	777
BshNI	GGYRCC	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	813
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	408, 685
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	777
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	813
Bsp1407I	TGTACA	2 cut(s)	339, 828
Bsp143I	GATC	3 cut(s)	397, 438, 842
BspACI	CCGC	2 cut(s)	89, 314
BspANI	GGCC	1 cut(s)	777
BspCNI	CTCAG	2 cut(s)	517, 727
BspLI	GGNNCC	2 cut(s)	289, 630
BspMI	ACCTGC	1 cut(s)	110
BspPI	GGATC	3 cut(s)	392, 433, 850
BspQI	GCTCTTC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	11
BsrGI	TGTACA	2 cut(s)	339, 828
BsrI	ACTGG	2 cut(s)	291, 632
BssECI	CCNNGG	2 cut(s)	195, 467
BssMI	GATC	3 cut(s)	397, 438, 842
Bst2UI	CCWGG	3 cut(s)	197, 468, 506
Bst4CI	ACNGT	2 cut(s)	306, 497
Bst6I	CTCTTC	1 cut(s)	68
BstAUI	TGTACA	2 cut(s)	339, 828
BstC8I	GCNNGC	2 cut(s)	326, 365
BstDEI	CTNAG	2 cut(s)	525, 735
BstENI	CCTNNNNNAGG	1 cut(s)	406
BstF5I	GGATG	4 cut(s)	288, 418, 537, 820
BstKTI	GATC	3 cut(s)	400, 441, 845
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	3 cut(s)	397, 438, 842
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	3 cut(s)	197, 468, 506
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	3 cut(s)	195, 466, 504
BstSFI	CTRYAG	2 cut(s)	219, 406
BstV1I	GCAGC	1 cut(s)	626
BstV2I	GAAGAC	2 cut(s)	429, 915
BstX2I	RGATCY	2 cut(s)	438, 842
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstYI	RGATCY	2 cut(s)	438, 842
BsuRI	GGCC	1 cut(s)	777
BtrI	CACGTC	1 cut(s)	796
BtsCI	GGATG	4 cut(s)	288, 418, 537, 820
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	4 cut(s)	56, 255, 502, 834
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	326, 365
Cfr13I	GGNCC	2 cut(s)	13, 448
Csp6I	GTAC	3 cut(s)	340, 620, 829
CviAII	CATG	3 cut(s)	17, 364, 542
CviQI	GTAC	3 cut(s)	340, 620, 829
DdeI	CTNAG	2 cut(s)	525, 735
DpnI	GATC	3 cut(s)	399, 440, 844
DpnII	GATC	3 cut(s)	397, 438, 842
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	777
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	2 cut(s)	13, 448
Eco57I	CTGAAG	2 cut(s)	858, 909
EcoNI	CCTNNNNNAGG	1 cut(s)	406
EcoRI	GAATTC	1 cut(s)	84
EcoRII	CCWGG	3 cut(s)	195, 466, 504
FaeI	CATG	3 cut(s)	20, 367, 545
FaiI	YATR	8 cut(s)	18, 296, 351, 365, 435, 543, 663, 908
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	3 cut(s)	16, 363, 541
FauI	CCCGC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	615
FokI	GGATG	4 cut(s)	295, 425, 524, 807
Fsp4HI	GCNGC	1 cut(s)	615
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	1 cut(s)	615
GsaI	CCCAGC	2 cut(s)	177, 267
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	1 cut(s)	777
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	3 cut(s)	20, 367, 545
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HinfI	GANTC	7 cut(s)	215, 253, 425, 485, 501, 545, 665
HpaI	GTTAAC	1 cut(s)	766
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	4 cut(s)	493, 500, 766, 829
Hpy188I	TCNGA	4 cut(s)	83, 526, 680, 731
Hpy188III	TCNNGA	2 cut(s)	686, 927
Hpy8I	GTNNAC	4 cut(s)	493, 500, 766, 829
HpyAV	CCTTC	7 cut(s)	265, 370, 466, 577, 767, 824, 833
HpyCH4III	ACNGT	2 cut(s)	306, 497
HpyCH4IV	ACGT	2 cut(s)	461, 795
HpyCH4V	TGCA	7 cut(s)	20, 119, 167, 335, 537, 551, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	2 cut(s)	525, 735
HpySE526I	ACGT	2 cut(s)	461, 795
Hsp92II	CATG	3 cut(s)	20, 367, 545
KspAI	GTTAAC	1 cut(s)	766
Kzo9I	GATC	3 cut(s)	397, 438, 842
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	2 cut(s)	157, 546
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	2 cut(s)	461, 795
MaeIII	GTNAC	2 cut(s)	784, 862
MalI	GATC	3 cut(s)	399, 440, 844
MboI	GATC	3 cut(s)	397, 438, 842
MboII	GAAGA	8 cut(s)	36, 39, 42, 45, 55, 212, 434, 915
MflI	RGATCY	2 cut(s)	438, 842
MhlI	GDGCHC	1 cut(s)	813
MluCI	AATT	4 cut(s)	84, 133, 162, 455
MlyI	GAGTC	4 cut(s)	224, 419, 495, 674
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	8 cut(s)	44, 89, 205, 378, 412, 532, 567, 646
MseI	TTAA	5 cut(s)	320, 453, 591, 605, 765
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	3 cut(s)	197, 468, 506
MvaI	CCWGG	3 cut(s)	197, 468, 506
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeII	GATC	3 cut(s)	397, 438, 842
NlaIII	CATG	3 cut(s)	20, 367, 545
NlaIV	GGNNCC	2 cut(s)	289, 630
NmuCI	GTSAC	1 cut(s)	862
NspI	RCATGY	1 cut(s)	367
PaeI	GCATGC	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	253, 485, 545
PkrI	GCNGC	1 cut(s)	616
PleI	GAGTC	4 cut(s)	223, 419, 495, 673
PpsI	GAGTC	4 cut(s)	223, 419, 495, 673
Psp6I	CCWGG	3 cut(s)	195, 466, 504
PspFI	CCCAGC	2 cut(s)	173, 263
PspGI	CCWGG	3 cut(s)	195, 466, 504
PspN4I	GGNNCC	2 cut(s)	289, 630
PspPI	GGNCC	2 cut(s)	13, 448
PsrI	GAACNNNNNNTAC	2 cut(s)	612, 644
PsuI	RGATCY	2 cut(s)	438, 842
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	3 cut(s)	341, 621, 830
RsaNI	GTAC	3 cut(s)	340, 620, 829
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	5 cut(s)	320, 453, 591, 605, 765
SatI	GCNGC	1 cut(s)	615
Sau3AI	GATC	3 cut(s)	397, 438, 842
Sau96I	GGNCC	2 cut(s)	13, 448
SchI	GAGTC	4 cut(s)	224, 419, 495, 674
ScrFI	CCNGG	3 cut(s)	197, 468, 506
SduI	GDGCHC	1 cut(s)	813
SfaNI	GCATC	2 cut(s)	157, 546
SfcI	CTRYAG	2 cut(s)	219, 406
SinI	GGWCC	2 cut(s)	13, 448
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	4 cut(s)	84, 133, 162, 455
SseBI	AGGCCT	1 cut(s)	777
SsiI	CCGC	2 cut(s)	89, 314
SspI	AATATT	1 cut(s)	900
SspMI	CTAG	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	777
StyD4I	CCNGG	3 cut(s)	195, 466, 504
TaaI	ACNGT	2 cut(s)	306, 497
TaiI	ACGT	2 cut(s)	464, 798
TasI	AATT	4 cut(s)	84, 133, 162, 455
TatI	WGTACW	3 cut(s)	339, 619, 828
TfiI	GAWTC	3 cut(s)	253, 485, 545
Tru1I	TTAA	5 cut(s)	320, 453, 591, 605, 765
Tru9I	TTAA	5 cut(s)	320, 453, 591, 605, 765
TscAI	CASTG	4 cut(s)	63, 255, 502, 841
TseFI	GTSAC	1 cut(s)	862
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	1 cut(s)	862
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	4 cut(s)	63, 255, 502, 841
VpaK11BI	GGWCC	2 cut(s)	13, 448
XagI	CCTNNNNNAGG	1 cut(s)	406
XapI	RAATTY	2 cut(s)	84, 455
XceI	RCATGY	1 cut(s)	367
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.