Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0014986

Physical Location & Seq

Genomic Coordinates Reverse (-)

35250864 .. 35255289

Gene Structure 4426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGGCTCTTGGTTCATGCACTTGGCTTCACCCTCTCTGCTTCTTCTTCTTCTTCACTGCTCTTCTCAAATGACAACCTCCGAATTCGGCCAATCTCACACTCCAACCTACGATTTGCAGGCAACTCCCCACCTCCTCTATTTCTCAATTTTCCGGGAAAGCATCATAAGGCTAGAATTGCAACCTCCAGCTTCACTTGTTTCTCTGCCCAGGAAGATAAACCGGAGGAGTCTGTAGTAGTAGTGAAAGAGAAAAGCGTGTCAGTGATTCTTTTGGCTGGGGGGAAGGGTAAAAGGATGGGTGCCAGTATGCCGAAACAGTATCTCCCGCTTTTAAGCCAGCCTATTGCATTGTACAGCTTCTATACTTTCTCACGCATGCCTCAAGTGAAGGAAATCATTGTAGTTTGTGATCCCTCCTACAGGGATGTTTTTGAAGACTCCAAGCATAAGATCCACACAGAACTTAAATTCACGTTGCCTGGGAAGGAAAGACAAGATTCTGTTTACAGTGGACTCCAGGCTATTGATTTGACCTCTGAGCTTGTTTGCATCCATGATTCTGCAAGACCTCTGGTATCATCAGGAGATGTTGAGAAGGTTCTTAAAGATGGTTGGTTAAATGGAGCAGCTGTACTTGGGGTTCCAGTAAAAGCGACCATCAAAGAGGCAAACTATGAGTCTTTTGTAGTCCGAACTCTGGACAGGAGAACACTTTGGGAAATGCAGACACCACAGGTCATCAAACCTGACTTGCTCAAAAAGGGCTTTGAACTTGTTAACAGAGAAGGCCTTGAAGTTACTGATGACGTGTCTATTGTTGAGCACCTTCCACATCCTGTGTACATCACTGAAGGATCTTACACCAACATCAAGGTCACAACGCCAGATGATTTGTTACTCGCAGAAAGAATATTGAGTATGGACACTAAAAAGTCTTCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046490 GO:0050518 GO:0070567 GO:0071704 GO:0090407 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

IspD

Protein Analysis

315

Amino Acids

34.88

Weight (kDa)

7.74

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IspD	PF01128	87 - 307	1.5e-55	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NTP_transf_3	PF12804	89 - 202	2.1e-08	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02500 AT2G02500
fragaria_vesca	FvH4_5g27480
malus_domestica	MD08G1249400.v1.1 MD15G1444200.v1.1
prunus_persica	Prupe.1G586600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218881
rosa_laevigata	RLG00000002347
rosa_multiflora	Rmu_sc0003823.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240430
rosa_rugosa	Rorug07G0179400
rosa_samantha	Rh7AG322700 Rh7BG313800 Rh7CG339500 Rh7DG319900
rosa_wichuraiana	Rw7G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	3 cut(s)	407, 448, 865
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	2 cut(s)	84, 470
AcuI	CTGAAG	2 cut(s)	873, 924
AfaI	GTAC	3 cut(s)	356, 636, 845
AfiI	CCNNNNNNNGG	2 cut(s)	423, 700
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	3 cut(s)	437, 773, 797
AjiI	CACGTC	1 cut(s)	811
AjnI	CCWGG	3 cut(s)	210, 481, 519
AluBI	AGCT	4 cut(s)	192, 360, 544, 632
AluI	AGCT	4 cut(s)	192, 360, 544, 632
Alw21I	GWGCWC	1 cut(s)	828
AlwI	GGATC	3 cut(s)	407, 448, 865
AoxI	GGCC	2 cut(s)	89, 790
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	2 cut(s)	84, 470
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	444, 930
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	1 cut(s)	641
BccI	CCATC	3 cut(s)	292, 605, 668
BciT130I	CCWGG	3 cut(s)	212, 483, 521
BcnI	CCSGG	1 cut(s)	156
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	2 cut(s)	234, 421
BisI	GCNGC	1 cut(s)	630
BlsI	GCNGC	1 cut(s)	631
Bme1390I	CCNGG	4 cut(s)	156, 212, 483, 521
BmgBI	CACGTC	1 cut(s)	811
BmiI	GGNNCC	2 cut(s)	304, 645
BmrFI	CCNGG	4 cut(s)	156, 212, 483, 521
BmsI	GCATC	2 cut(s)	172, 561
BpiI	GAAGAC	2 cut(s)	444, 930
BpmI	CTGGAG	2 cut(s)	172, 503
BpuEI	CTTGAG	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	210, 482
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	4 cut(s)	309, 339, 618, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 700
Bse1I	ACTGG	2 cut(s)	306, 647
BseBI	CCWGG	3 cut(s)	212, 483, 521
BseDI	CCNNGG	2 cut(s)	210, 482
BseGI	GGATG	4 cut(s)	303, 433, 552, 835
BseLI	CCNNNNNNNGG	2 cut(s)	423, 700
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	306, 647
BseRI	GAGGAG	2 cut(s)	126, 242
BseXI	GCAGC	1 cut(s)	641
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	2 cut(s)	91, 792
BshNI	GGYRCC	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	828
BsiSI	CCGG	2 cut(s)	155, 224
BslI	CCNNNNNNNGG	2 cut(s)	423, 700
BsnI	GGCC	2 cut(s)	91, 792
Bsp1286I	GDGCHC	2 cut(s)	9, 828
Bsp1407I	TGTACA	2 cut(s)	354, 843
Bsp143I	GATC	3 cut(s)	412, 453, 857
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	2 cut(s)	91, 792
BspCNI	CTCAG	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	304, 645
BspPI	GGATC	3 cut(s)	407, 448, 865
BspQI	GCTCTTC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	302
BsrGI	TGTACA	2 cut(s)	354, 843
BsrI	ACTGG	2 cut(s)	306, 647
BssECI	CCNNGG	2 cut(s)	210, 482
BssMI	GATC	3 cut(s)	412, 453, 857
Bst2UI	CCWGG	3 cut(s)	212, 483, 521
Bst4CI	ACNGT	2 cut(s)	321, 512
Bst6I	CTCTTC	1 cut(s)	68
BstAUI	TGTACA	2 cut(s)	354, 843
BstC8I	GCNNGC	3 cut(s)	121, 341, 380
BstDEI	CTNAG	1 cut(s)	540
BstENI	CCTNNNNNAGG	1 cut(s)	421
BstF5I	GGATG	4 cut(s)	303, 433, 552, 835
BstKTI	GATC	3 cut(s)	415, 456, 860
BstMBI	GATC	3 cut(s)	412, 453, 857
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	3 cut(s)	212, 483, 521
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	4 cut(s)	154, 210, 481, 519
BstSFI	CTRYAG	2 cut(s)	234, 421
BstV1I	GCAGC	1 cut(s)	641
BstV2I	GAAGAC	2 cut(s)	444, 930
BstX2I	RGATCY	2 cut(s)	453, 857
BstYI	RGATCY	2 cut(s)	453, 857
BsuRI	GGCC	2 cut(s)	91, 792
BtrI	CACGTC	1 cut(s)	811
BtsCI	GGATG	4 cut(s)	303, 433, 552, 835
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	4 cut(s)	56, 270, 517, 849
Cac8I	GCNNGC	3 cut(s)	121, 341, 380
Csp6I	GTAC	3 cut(s)	355, 635, 844
CviAII	CATG	3 cut(s)	17, 379, 557
CviQI	GTAC	3 cut(s)	355, 635, 844
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	3 cut(s)	414, 455, 859
DpnII	GATC	3 cut(s)	412, 453, 857
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	792
Eco24I	GRGCYC	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	873, 924
EcoNI	CCTNNNNNAGG	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	84
EcoRII	CCWGG	3 cut(s)	210, 481, 519
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	3 cut(s)	20, 382, 560
FaiI	YATR	9 cut(s)	18, 168, 311, 366, 380, 450, 558, 678, 923
FatI	CATG	3 cut(s)	16, 378, 556
FauI	CCCGC	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	630
FokI	GGATG	4 cut(s)	310, 440, 539, 822
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	630
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	1 cut(s)	630
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	172, 503
HaeIII	GGCC	2 cut(s)	91, 792
HapII	CCGG	2 cut(s)	155, 224
Hin1II	CATG	3 cut(s)	20, 382, 560
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	7 cut(s)	230, 268, 440, 500, 516, 560, 680
HpaI	GTTAAC	1 cut(s)	781
HpaII	CCGG	2 cut(s)	155, 224
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	4 cut(s)	508, 515, 781, 844
Hpy188I	TCNGA	3 cut(s)	83, 541, 695
Hpy188III	TCNNGA	3 cut(s)	585, 701, 942
Hpy8I	GTNNAC	4 cut(s)	508, 515, 781, 844
HpyAV	CCTTC	7 cut(s)	280, 385, 481, 592, 782, 839, 848
HpyCH4III	ACNGT	2 cut(s)	321, 512
HpyCH4IV	ACGT	2 cut(s)	476, 810
HpyCH4V	TGCA	7 cut(s)	20, 119, 182, 350, 552, 566, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	2 cut(s)	476, 810
Hsp92II	CATG	3 cut(s)	20, 382, 560
KspAI	GTTAAC	1 cut(s)	781
Kzo9I	GATC	3 cut(s)	412, 453, 857
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	626
Lsp1109I	GCAGC	1 cut(s)	641
LweI	GCATC	2 cut(s)	172, 561
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	2 cut(s)	476, 810
MaeIII	GTNAC	3 cut(s)	799, 877, 897
MalI	GATC	3 cut(s)	414, 455, 859
MboI	GATC	3 cut(s)	412, 453, 857
MboII	GAAGA	8 cut(s)	36, 39, 42, 45, 55, 227, 449, 930
MflI	RGATCY	2 cut(s)	453, 857
MhlI	GDGCHC	2 cut(s)	9, 828
MluCI	AATT	4 cut(s)	84, 148, 177, 470
MlyI	GAGTC	4 cut(s)	239, 434, 510, 689
MmeI	TCCRAC	1 cut(s)	129
MseI	TTAA	5 cut(s)	335, 468, 606, 620, 780
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	2 cut(s)	155, 224
MspR9I	CCNGG	4 cut(s)	156, 212, 483, 521
MvaI	CCWGG	3 cut(s)	212, 483, 521
MwoI	GCNNNNNNNGC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	412, 453, 857
NlaIII	CATG	3 cut(s)	20, 382, 560
NlaIV	GGNNCC	2 cut(s)	304, 645
NmuCI	GTSAC	1 cut(s)	877
NspI	RCATGY	1 cut(s)	382
PaeI	GCATGC	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	792
PciSI	GCTCTTC	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	268, 500, 560
PfoI	TCCNGGA	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	631
PleI	GAGTC	4 cut(s)	238, 434, 510, 688
PpsI	GAGTC	4 cut(s)	238, 434, 510, 688
Psp6I	CCWGG	3 cut(s)	210, 481, 519
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	3 cut(s)	210, 481, 519
PspN4I	GGNNCC	2 cut(s)	304, 645
PsrI	GAACNNNNNNTAC	2 cut(s)	627, 659
PsuI	RGATCY	2 cut(s)	453, 857
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	3 cut(s)	356, 636, 845
RsaNI	GTAC	3 cut(s)	355, 635, 844
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	5 cut(s)	335, 468, 606, 620, 780
SatI	GCNGC	1 cut(s)	630
Sau3AI	GATC	3 cut(s)	412, 453, 857
SchI	GAGTC	4 cut(s)	239, 434, 510, 689
ScrFI	CCNGG	4 cut(s)	156, 212, 483, 521
SduI	GDGCHC	2 cut(s)	9, 828
SfaNI	GCATC	2 cut(s)	172, 561
SfcI	CTRYAG	2 cut(s)	234, 421
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
SphI	GCATGC	1 cut(s)	382
Sse9I	AATT	4 cut(s)	84, 148, 177, 470
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	1 cut(s)	329
SspI	AATATT	1 cut(s)	915
SspMI	CTAG	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	4 cut(s)	154, 210, 481, 519
TaaI	ACNGT	2 cut(s)	321, 512
TaiI	ACGT	2 cut(s)	479, 813
TasI	AATT	4 cut(s)	84, 148, 177, 470
TatI	WGTACW	3 cut(s)	354, 634, 843
TfiI	GAWTC	3 cut(s)	268, 500, 560
Tru1I	TTAA	5 cut(s)	335, 468, 606, 620, 780
Tru9I	TTAA	5 cut(s)	335, 468, 606, 620, 780
TscAI	CASTG	4 cut(s)	63, 270, 517, 856
TseFI	GTSAC	1 cut(s)	877
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	877
TspDTI	ATGAA	1 cut(s)	5
TspRI	CASTG	4 cut(s)	63, 270, 517, 856
XagI	CCTNNNNNAGG	1 cut(s)	421
XapI	RAATTY	2 cut(s)	84, 470
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.