Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014986

Physical Location & Seq

Genomic Coordinates Forward (+)

47616528 .. 47621445

Gene Structure 4918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G586600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGGCTTTGTGTTGTTGGACTGGACCTCCTCACTCCCTCTTCTTCACCACTCTTTTCGAGTCATAATCTCAGGATTCCACCACTTTCACACTCTAACCTTAGACTTGCAGGCCACCCATTCAATTTCAGGCTCAAGGCTAAGGCTAGAATTGCAAGCTCAACCTTCACTACTTGCTCTGCAAAAGTCGTCAATGTAGATAAACCAGAGTCTAAAATAGTGAAAGAGAACAGCGTATCCGTGATTCTTTTGGCAGGAGGAAAGGGTAAAAGGATGGGTGCCAGCATGCCAAAGCAATATCTTCCGCTTTTGAGCCAGCCAATTGCATTGTATAGCTTCTACACTTTCTCTCAAATGACTGAAGTGAAGGAAATCATTGTAGTTTGTGATCCCTCCTACAAGGATATTTTTGAAGAGACCAAGCATAAGATCCAGAAAGAACTTAAATTCACATTACCCGGAAAGGAAAGACAAGATTCTGTTTACAGCGGACTCCAGGCAATTGATTTGAGCTCTGAGCTTGTTTGCATCCATGATTCTGCTAGACCTCTTGTATCATCTGGAGACGTAGAGAAGGTTCTTAAAGATGGTTGGTTGAATGGAGCAGCTGTACTTGGTGTTCCAGTAAAAGCTACAATCAAAGAGGCAAACAGCGAGTCTTTTGTAGTCAAAACTCTGGACAGGAGAACACTTTGGGAAATGCAGACACCCCAGGTCATCAAACCTCAGTTGCTCAGAAAGGGTTTTGAGCTTGTAAATAGAGAAGGCCTTGAAGTGACTGATGACGTCTCTATTGTCGAGCACCTTCCACATCCTGTGTACATCACTGAAGGATCTTACACCAACATCAAGGTCACAACCCCGGATGATTTATTACTTGCAGAAAGAATATTAAGTATGAGCTCTGGAAAGTCTTCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046490 GO:0050518 GO:0070567 GO:0071704 GO:0090407 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

IspD

Protein Analysis

308

Amino Acids

33.85

Weight (kDa)

8.53

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02500 AT2G02500
fragaria_vesca	FvH4_5g27480
malus_domestica	MD08G1249400.v1.1 MD15G1444200.v1.1
prunus_persica	Prupe.1G586600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218881
rosa_laevigata	RLG00000002347
rosa_multiflora	Rmu_sc0003823.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240430
rosa_rugosa	Rorug07G0179400
rosa_samantha	Rh7AG322700 Rh7BG313800 Rh7CG339500 Rh7DG319900
rosa_wichuraiana	Rw7G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	789
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	2 cut(s)	305, 489
AclWI	GGATC	3 cut(s)	383, 424, 841
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	2 cut(s)	381, 849
AcyI	GRCGYC	1 cut(s)	786
AfaI	GTAC	2 cut(s)	612, 821
AgsI	TTSAA	4 cut(s)	124, 413, 598, 773
AjnI	CCWGG	2 cut(s)	495, 711
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	8 cut(s)	159, 336, 513, 520, 608, 632, 751, 903
AluI	AGCT	8 cut(s)	159, 336, 513, 520, 608, 632, 751, 903
Alw21I	GWGCWC	3 cut(s)	515, 804, 905
Alw26I	GTCTC	3 cut(s)	410, 558, 793
AlwI	GGATC	3 cut(s)	383, 424, 841
AoxI	GGCC	2 cut(s)	112, 766
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	1 cut(s)	446
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
Asp700I	GAANNNNTTC	1 cut(s)	913
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	2 cut(s)	459, 863
AsuHPI	GGTGA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	2 cut(s)	515, 905
BbsI	GAAGAC	1 cut(s)	906
Bbv12I	GWGCWC	3 cut(s)	515, 804, 905
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	2 cut(s)	268, 581
BciT130I	CCWGG	2 cut(s)	497, 713
BciVI	GTATCC	1 cut(s)	247
BcnI	CCSGG	2 cut(s)	459, 863
BcoDI	GTCTC	3 cut(s)	410, 558, 793
BfaI	CTAG	2 cut(s)	147, 543
BfuI	GTATCC	1 cut(s)	247
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	4 cut(s)	459, 497, 713, 863
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	4 cut(s)	459, 497, 713, 863
BmsI	GCATC	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	906
BpmI	CTGGAG	2 cut(s)	479, 582
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	2 cut(s)	459, 863
BsaHI	GRCGYC	1 cut(s)	786
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	711, 861
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 594, 624
Bse1I	ACTGG	2 cut(s)	27, 623
BseBI	CCWGG	2 cut(s)	497, 713
BseDI	CCNNGG	2 cut(s)	711, 861
BseGI	GGATG	4 cut(s)	279, 528, 811, 871
BseMII	CTCAG	4 cut(s)	85, 507, 740, 748
BseNI	ACTGG	2 cut(s)	27, 623
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	617
BshFI	GGCC	2 cut(s)	114, 768
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	3 cut(s)	515, 804, 905
BsiSI	CCGG	2 cut(s)	459, 863
BsmAI	GTCTC	3 cut(s)	410, 558, 793
BsmBI	CGTCTC	2 cut(s)	558, 793
BsnI	GGCC	2 cut(s)	114, 768
Bso31I	GGTCTC	1 cut(s)	410
Bsp1286I	GDGCHC	3 cut(s)	515, 804, 905
Bsp1407I	TGTACA	1 cut(s)	819
Bsp143I	GATC	3 cut(s)	388, 429, 833
BspACI	CCGC	2 cut(s)	305, 489
BspANI	GGCC	2 cut(s)	114, 768
BspCNI	CTCAG	4 cut(s)	84, 508, 739, 747
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	3 cut(s)	383, 424, 841
BspT107I	GGYRCC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	410
BsrGI	TGTACA	1 cut(s)	819
BsrI	ACTGG	2 cut(s)	27, 623
BssECI	CCNNGG	2 cut(s)	711, 861
BssMI	GATC	3 cut(s)	388, 429, 833
BssNI	GRCGYC	1 cut(s)	786
Bst2UI	CCWGG	2 cut(s)	497, 713
Bst6I	CTCTTC	2 cut(s)	46, 408
BstACI	GRCGYC	1 cut(s)	786
BstAUI	TGTACA	1 cut(s)	819
BstC8I	GCNNGC	5 cut(s)	112, 157, 283, 287, 317
BstDEI	CTNAG	6 cut(s)	71, 101, 141, 516, 726, 734
BstF5I	GGATG	4 cut(s)	279, 528, 811, 871
BstKTI	GATC	3 cut(s)	391, 432, 836
BstMAI	GTCTC	3 cut(s)	410, 558, 793
BstMBI	GATC	3 cut(s)	388, 429, 833
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	497, 713
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	4 cut(s)	457, 495, 711, 861
BstV1I	GCAGC	1 cut(s)	617
BstV2I	GAAGAC	1 cut(s)	906
BstX2I	RGATCY	2 cut(s)	429, 833
BstYI	RGATCY	2 cut(s)	429, 833
BsuI	GTATCC	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	114, 768
BtsCI	GGATG	4 cut(s)	279, 528, 811, 871
BtsIMutI	CAGTG	1 cut(s)	825
Cac8I	GCNNGC	5 cut(s)	112, 157, 283, 287, 317
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	611, 820
CviAII	CATG	2 cut(s)	286, 533
CviQI	GTAC	2 cut(s)	611, 820
DdeI	CTNAG	6 cut(s)	71, 101, 141, 516, 726, 734
DpnI	GATC	3 cut(s)	390, 431, 835
DpnII	GATC	3 cut(s)	388, 429, 833
Eam1104I	CTCTTC	2 cut(s)	46, 408
EarI	CTCTTC	2 cut(s)	46, 408
Ecl136II	GAGCTC	2 cut(s)	513, 903
Eco147I	AGGCCT	1 cut(s)	768
Eco24I	GRGCYC	2 cut(s)	515, 905
Eco31I	GGTCTC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	25
Eco53kI	GAGCTC	2 cut(s)	513, 903
Eco57I	CTGAAG	2 cut(s)	381, 849
EcoICRI	GAGCTC	2 cut(s)	513, 903
EcoRII	CCWGG	2 cut(s)	495, 711
EcoT38I	GRGCYC	2 cut(s)	515, 905
Esp3I	CGTCTC	2 cut(s)	558, 793
FaeI	CATG	2 cut(s)	289, 536
FaiI	YATR	6 cut(s)	66, 287, 333, 426, 534, 899
FatI	CATG	2 cut(s)	285, 532
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	4 cut(s)	286, 515, 798, 878
FriOI	GRGCYC	2 cut(s)	515, 905
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	2 cut(s)	147, 543
GluI	GCNGC	1 cut(s)	606
GsuI	CTGGAG	2 cut(s)	479, 582
HaeIII	GGCC	2 cut(s)	114, 768
HapII	CCGG	2 cut(s)	459, 863
Hin1I	GRCGYC	1 cut(s)	786
Hin1II	CATG	2 cut(s)	289, 536
HinfI	GANTC	8 cut(s)	61, 76, 209, 244, 476, 492, 536, 656
HpaII	CCGG	2 cut(s)	459, 863
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	2 cut(s)	484, 820
Hpy188I	TCNGA	3 cut(s)	517, 737, 919
Hpy188III	TCNNGA	5 cut(s)	73, 433, 561, 677, 906
Hpy8I	GTNNAC	2 cut(s)	484, 820
HpyAV	CCTTC	6 cut(s)	175, 361, 568, 758, 815, 824
HpyCH4IV	ACGT	2 cut(s)	567, 786
HpyCH4V	TGCA	7 cut(s)	110, 155, 182, 326, 528, 703, 881
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	6 cut(s)	71, 101, 141, 516, 726, 734
HpySE526I	ACGT	2 cut(s)	567, 786
Hsp92I	GRCGYC	1 cut(s)	786
Hsp92II	CATG	2 cut(s)	289, 536
Kzo9I	GATC	3 cut(s)	388, 429, 833
LmnI	GCTCC	1 cut(s)	602
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	2 cut(s)	147, 543
MaeII	ACGT	2 cut(s)	567, 786
MaeIII	GTNAC	2 cut(s)	775, 853
MalI	GATC	3 cut(s)	390, 431, 835
MboI	GATC	3 cut(s)	388, 429, 833
MboII	GAAGA	5 cut(s)	33, 36, 293, 425, 906
MfeI	CAATTG	2 cut(s)	321, 501
MflI	RGATCY	2 cut(s)	429, 833
MhlI	GDGCHC	3 cut(s)	515, 804, 905
MluCI	AATT	5 cut(s)	124, 150, 321, 446, 501
MlyI	GAGTC	4 cut(s)	70, 218, 486, 665
MnlI	CCTC	8 cut(s)	38, 41, 49, 251, 403, 558, 637, 735
MroXI	GAANNNNTTC	1 cut(s)	913
MseI	TTAA	3 cut(s)	444, 582, 893
MspA1I	CMGCKG	2 cut(s)	489, 608
MspI	CCGG	2 cut(s)	459, 863
MspR9I	CCNGG	4 cut(s)	459, 497, 713, 863
MunI	CAATTG	2 cut(s)	321, 501
MvaI	CCWGG	2 cut(s)	497, 713
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	2 cut(s)	459, 863
NdeII	GATC	3 cut(s)	388, 429, 833
NlaIII	CATG	2 cut(s)	289, 536
NlaIV	GGNNCC	1 cut(s)	280
NmuCI	GTSAC	2 cut(s)	775, 853
NspI	RCATGY	1 cut(s)	289
PaeI	GCATGC	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	768
PdmI	GAANNNNTTC	1 cut(s)	913
PfeI	GAWTC	4 cut(s)	76, 244, 476, 536
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	4 cut(s)	69, 217, 486, 664
PpsI	GAGTC	4 cut(s)	69, 217, 486, 664
Psp124BI	GAGCTC	2 cut(s)	515, 905
Psp6I	CCWGG	2 cut(s)	495, 711
PspGI	CCWGG	2 cut(s)	495, 711
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	25
PsrI	GAACNNNNNNTAC	4 cut(s)	561, 593, 603, 635
PsuI	RGATCY	2 cut(s)	429, 833
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	2 cut(s)	612, 821
RsaNI	GTAC	2 cut(s)	611, 820
SacI	GAGCTC	2 cut(s)	515, 905
SaqAI	TTAA	3 cut(s)	444, 582, 893
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	3 cut(s)	388, 429, 833
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	4 cut(s)	70, 218, 486, 665
ScrFI	CCNGG	4 cut(s)	459, 497, 713, 863
SduI	GDGCHC	3 cut(s)	515, 804, 905
SfaNI	GCATC	1 cut(s)	537
SinI	GGWCC	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	5 cut(s)	124, 150, 321, 446, 501
SseBI	AGGCCT	1 cut(s)	768
SsiI	CCGC	2 cut(s)	305, 489
SspI	AATATT	1 cut(s)	891
SspMI	CTAG	2 cut(s)	147, 543
SstI	GAGCTC	2 cut(s)	515, 905
StuI	AGGCCT	1 cut(s)	768
StyD4I	CCNGG	4 cut(s)	457, 495, 711, 861
TaiI	ACGT	2 cut(s)	570, 789
TaqI	TCGA	2 cut(s)	59, 798
TasI	AATT	5 cut(s)	124, 150, 321, 446, 501
TatI	WGTACW	2 cut(s)	610, 819
TfiI	GAWTC	4 cut(s)	76, 244, 476, 536
Tru1I	TTAA	3 cut(s)	444, 582, 893
Tru9I	TTAA	3 cut(s)	444, 582, 893
TscAI	CASTG	1 cut(s)	832
TseFI	GTSAC	2 cut(s)	775, 853
TseI	GCWGC	1 cut(s)	605
Tsp45I	GTSAC	2 cut(s)	775, 853
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	1 cut(s)	832
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	446
XceI	RCATGY	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	913
XspI	CTAG	2 cut(s)	147, 543
ZraI	GACGTC	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.