Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0014986

Physical Location & Seq

Genomic Coordinates Reverse (-)

14922024 .. 14926577

Gene Structure 4554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0179400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGACGATCCTATGCTTTCTTCTTCTTCTTCTTCTTCTACGCAGCTCAATCAGCCGCCGCCGACGCCTCTGGCGGTCCAGCCGGAGACGCCGGCCCGGCACATCGAGCGAATGCTGAACGTCAACCACCACCACCGATCGCCGTCGCGGACCATCTACTCCGATAGGTTCATACCCAGCAGATCCGGCTCTAACTTTGGTTTGTTCGACATCAAATCGCCGACGAATTCTCAGTCCGACGAGACCTCCAGCGCCTACACCACGCTCCTACGCGCCGCCCTCTTCGGCCCCGACACCGCCGGAGTGATTCCTCCGGCGACCCCCGATCGGCGGGGGCTGATGAACCCGCCGAACCAGAATATATTCCGGTTCAAGAGCGAGACCCGGCGGTCCATGCACTCGCTGCTGCCGTTTGGGTTTGATGATGACGTGGTCACCGGAGTTCATCATAGTCCGGTGAAGACCCCCAGGAAGGTCCCCAGGTCGCCGTATAAGGTTTTGGATGCACCGGCTTTGCAAGACGATTTCTATCTGAATCTGGTGGATTGGTCTTCGCATAATGTATTGGCTGTGGGGTTAGGGAACTGTGTTTATTTGTGGAATGCTTGTAGTAGTAAGGTAACTAAGTTATGCGATTTGGGGACTGATGATAGTGTCTGTTCGGTTGGCTGGGCGCAGCGGGGAACTCATCTTGCTGTGGGAACTGGCAATGGGAAAGTCCAAATTTGGGATGCATCTCGCTGTAAGAGGGTAAGAACTATGGAGGGCCATCGTCTACGTATTGGGGCATTGGCCTGGAGTTCATCCATGTTGTCTTCTGGTAGCCGTGACAAGAGTATTCTTCAACGGGATATACGCGCTCAGGAAGATTTCGTTAGCAAACTTTCTGGACATAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGACAACCGTGAGTTGGCATCAGGCGGGAATGATAATAGACTTTTTGTTTGGAATCAACATTCAACTCAACCCGTGCTGAAATACTGTGAGCATACTGCTGCCGTGAAAGCTATTGCATGGTCCCCCCATCTTCATGGACTTCTTGCATCTGGGGGAGGAACTGCAGACCGATGTATCCGTTTCTGGAATACAACCACTAACTCTCACTTGAGCTGCATGGACACTGGAAGTCAGGTTTGCAATCTTGTGTGGTCCAAAAATGTCAATGAGCTCGTCAGCACGCACGGGTACTCCCAAAATCAGATAATAGTTTGGAGATATCCTACGATGTCCAAGCTGGCAACTCTCACGGGCCATACATATAGAGTTCTTTATCTTGCCATCTCACCTGACGGACAGACAATTGTCACAGGAGCAGGAGATGAAACACTTAGGTTTTGGAATGTGTTTCCTTCCCCTAAATCTCAGAATACGGGAAGTGAAATCGGAGCATCATGTCTAGGCAGAACCATCATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046490 GO:0050518 GO:0070567 GO:0071704 GO:0090407 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

IspD

Protein Analysis

482

Amino Acids

53.17

Weight (kDa)

9.15

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	167 - 456	8e-128	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	179 - 268	2.1e-08	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	185 - 350	4.8e-17	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR19_1st	PF23389	187 - 280	4.5e-12	WDR19 first beta-propeller
Beta-prop_WDR3_1st	PF25173	188 - 289	2.9e-13	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	196 - 280	2.9e-09	THOC3 beta-propeller domain
ANAPC4_WD40	PF12894	207 - 268	9.2e-06	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR5	PF25175	215 - 398	1.8e-23	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	215 - 280	6.1e-06	WDR3 second beta-propeller domain
WDR55	PF24796	215 - 461	2.9e-11	WDR55
WD40_MABP1-WDR62_2nd	PF24782	217 - 457	1.7e-14	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	219 - 391	2.4e-10	TEP-1 second beta-propeller
WD40_Prp19	PF24814	269 - 457	3.4e-17	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	286 - 378	4.2e-10	CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st	PF24817	287 - 355	2.5e-06	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	290 - 402	1.4e-14	WDR3 first beta-propeller domain
WD40	PF00400	291 - 327	4.2e-07	WD domain, G-beta repeat
WD40_Gbeta	PF25391	293 - 462	1.9e-12	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	298 - 404	7.6e-19	THOC3 beta-propeller domain
Beta-prop_Aladin	PF25460	298 - 458	2.5e-08	Aladin seven-bladed propeller
Beta-prop_EML	PF23409	337 - 459	2.5e-10	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5	PF25175	339 - 458	1.1e-13	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	340 - 458	1.6e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	364 - 461	2.5e-08	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	387 - 458	2.4e-08	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	407 - 458	2.6e-08	THOC3 beta-propeller domain
WD40	PF00400	421 - 457	1e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02500 AT2G02500
fragaria_vesca	FvH4_5g27480
malus_domestica	MD08G1249400.v1.1 MD15G1444200.v1.1
prunus_persica	Prupe.1G586600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218881
rosa_laevigata	RLG00000002347
rosa_multiflora	Rmu_sc0003823.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240430
rosa_rugosa	Rorug07G0179400
rosa_samantha	Rh7AG322700 Rh7BG313800 Rh7CG339500 Rh7DG319900
rosa_wichuraiana	Rw7G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	775
AccII	CGCG	3 cut(s)	148, 273, 858
AclWI	GGATC	2 cut(s)	2, 177
AcsI	RAATTY	2 cut(s)	226, 723
AcuI	CTGAAG	1 cut(s)	935
AcyI	GRCGYC	2 cut(s)	65, 89
AfaI	GTAC	1 cut(s)	1217
AfiI	CCNNNNNNNGG	6 cut(s)	327, 330, 472, 727, 940, 1443
AgsI	TTSAA	3 cut(s)	373, 845, 990
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	3 cut(s)	467, 479, 794
AluBI	AGCT	5 cut(s)	46, 1037, 1140, 1198, 1264
AluI	AGCT	5 cut(s)	46, 1037, 1140, 1198, 1264
Alw21I	GWGCWC	1 cut(s)	1200
Alw26I	GTCTC	3 cut(s)	80, 236, 374
AlwI	GGATC	2 cut(s)	2, 177
AoxI	GGCC	5 cut(s)	93, 286, 766, 792, 1279
ApeKI	GCWGC	6 cut(s)	43, 403, 406, 676, 1025, 1140
ApoI	RAATTY	2 cut(s)	226, 723
ArsI	GACNNNNNNTTYG	4 cut(s)	218, 250, 957, 989
Asp700I	GAANNNNTTC	1 cut(s)	362
AspLEI	GCGC	4 cut(s)	254, 275, 676, 860
AsuC2I	CCSGG	2 cut(s)	97, 385
AsuHPI	GGTGA	3 cut(s)	427, 469, 1305
AvaII	GGWCC	6 cut(s)	76, 150, 390, 475, 1047, 1179
BaeI	ACNNNNGTAYC	2 cut(s)	1084, 1117
BanII	GRGCYC	1 cut(s)	1200
BbsI	GAAGAC	3 cut(s)	467, 543, 807
Bbv12I	GWGCWC	1 cut(s)	1200
BbvI	GCAGC	6 cut(s)	55, 390, 393, 688, 1012, 1127
BccI	CCATC	5 cut(s)	161, 777, 1062, 1316, 1445
BceAI	ACGGC	5 cut(s)	127, 394, 472, 810, 1013
BciT130I	CCWGG	3 cut(s)	469, 481, 796
BciVI	GTATCC	1 cut(s)	1112
BcnI	CCSGG	2 cut(s)	97, 385
BcoDI	GTCTC	3 cut(s)	80, 236, 374
BfaI	CTAG	1 cut(s)	1427
BfmI	CTRYAG	1 cut(s)	1089
BfoI	RGCGCY	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	1112
BglI	GCCNNNNNGGC	1 cut(s)	97
BisI	GCNGC	9 cut(s)	44, 56, 59, 276, 404, 407, 677, 1026, 1141
BlsI	GCNGC	9 cut(s)	45, 57, 60, 277, 405, 408, 678, 1027, 1142
Bme1390I	CCNGG	5 cut(s)	97, 385, 469, 481, 796
Bme18I	GGWCC	6 cut(s)	76, 150, 390, 475, 1047, 1179
BmgBI	CACGTC	1 cut(s)	430
BmiI	GGNNCC	3 cut(s)	289, 477, 1049
BmrFI	CCNGG	5 cut(s)	97, 385, 469, 481, 796
BmsI	GCATC	6 cut(s)	493, 721, 743, 953, 1082, 1427
BoxI	GACNNNNGTC	2 cut(s)	895, 1331
BpiI	GAAGAC	3 cut(s)	467, 543, 807
BpmI	CTGGAG	2 cut(s)	232, 817
Bpu10I	CCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	1 cut(s)	1156
BpuMI	CCSGG	2 cut(s)	97, 385
BsaAI	YACGTR	1 cut(s)	779
BsaBI	GATNNNNATC	1 cut(s)	528
BsaHI	GRCGYC	2 cut(s)	65, 89
BsaI	GGTCTC	2 cut(s)	236, 374
BsaJI	CCNNGG	2 cut(s)	467, 479
BsaWI	WCCGGW	3 cut(s)	366, 437, 454
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 1202, 1232
Bsc4I	CCNNNNNNNGG	6 cut(s)	327, 330, 472, 727, 940, 1443
Bse118I	RCCGGY	2 cut(s)	91, 508
Bse1I	ACTGG	2 cut(s)	709, 1156
Bse3DI	GCAATG	1 cut(s)	715
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	3 cut(s)	469, 481, 796
BseDI	CCNNGG	2 cut(s)	467, 479
BseGI	GGATG	3 cut(s)	508, 736, 803
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	6 cut(s)	327, 330, 472, 727, 940, 1443
BseMI	GCAATG	1 cut(s)	715
BseMII	CTCAG	3 cut(s)	245, 875, 1406
BseNI	ACTGG	2 cut(s)	709, 1156
BseXI	GCAGC	6 cut(s)	55, 390, 393, 688, 1012, 1127
BseYI	CCCAGC	2 cut(s)	176, 669
Bsh1236I	CGCG	3 cut(s)	148, 273, 858
Bsh1285I	CGRYCG	2 cut(s)	140, 328
BshFI	GGCC	5 cut(s)	95, 288, 768, 794, 1281
BsiEI	CGRYCG	2 cut(s)	140, 328
BsiHKAI	GWGCWC	1 cut(s)	1200
BslFI	GGGAC	3 cut(s)	461, 655, 1033
BslI	CCNNNNNNNGG	6 cut(s)	327, 330, 472, 727, 940, 1443
BsmAI	GTCTC	3 cut(s)	80, 236, 374
BsmBI	CGTCTC	1 cut(s)	80
BsmFI	GGGAC	3 cut(s)	461, 655, 1033
BsmI	GAATGC	2 cut(s)	117, 607
BsnI	GGCC	5 cut(s)	95, 288, 768, 794, 1281
Bso31I	GGTCTC	2 cut(s)	236, 374
Bsp1286I	GDGCHC	1 cut(s)	1200
Bsp143I	GATC	4 cut(s)	7, 137, 182, 325
BspANI	GGCC	5 cut(s)	95, 288, 768, 794, 1281
BspCNI	CTCAG	3 cut(s)	244, 874, 1405
BspFNI	CGCG	3 cut(s)	148, 273, 858
BspLI	GGNNCC	3 cut(s)	289, 477, 1049
BspMAI	CTGCAG	1 cut(s)	1093
BspPI	GGATC	2 cut(s)	2, 177
BspTNI	GGTCTC	2 cut(s)	236, 374
BsrDI	GCAATG	1 cut(s)	715
BsrFI	RCCGGY	2 cut(s)	91, 508
BsrI	ACTGG	2 cut(s)	709, 1156
BssAI	RCCGGY	2 cut(s)	91, 508
BssECI	CCNNGG	2 cut(s)	467, 479
BssMI	GATC	4 cut(s)	7, 137, 182, 325
BssNI	GRCGYC	2 cut(s)	65, 89
Bst2UI	CCWGG	3 cut(s)	469, 481, 796
Bst4CI	ACNGT	3 cut(s)	587, 935, 1013
Bst6I	CTCTTC	1 cut(s)	287
BstACI	GRCGYC	2 cut(s)	65, 89
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstBAI	YACGTR	1 cut(s)	779
BstC8I	GCNNGC	3 cut(s)	93, 1208, 1266
BstDEI	CTNAG	5 cut(s)	231, 624, 861, 1358, 1392
BstEII	GGTNACC	1 cut(s)	433
BstF5I	GGATG	3 cut(s)	508, 736, 803
BstFNI	CGCG	3 cut(s)	148, 273, 858
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	4 cut(s)	254, 275, 676, 860
BstKTI	GATC	4 cut(s)	10, 140, 185, 328
BstMAI	GTCTC	3 cut(s)	80, 236, 374
BstMBI	GATC	4 cut(s)	7, 137, 182, 325
BstMCI	CGRYCG	2 cut(s)	140, 328
BstMWI	GCNNNNNNNGC	9 cut(s)	52, 64, 88, 97, 106, 186, 394, 403, 1034
BstNI	CCWGG	3 cut(s)	469, 481, 796
BstPAI	GACNNNNGTC	2 cut(s)	895, 1331
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	5 cut(s)	95, 383, 467, 479, 794
BstSFI	CTRYAG	1 cut(s)	1089
BstSNI	TACGTA	1 cut(s)	779
BstUI	CGCG	3 cut(s)	148, 273, 858
BstV1I	GCAGC	6 cut(s)	55, 390, 393, 688, 1012, 1127
BstV2I	GAAGAC	3 cut(s)	467, 543, 807
BstX2I	RGATCY	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	1061
BstYI	RGATCY	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	1112
BsuRI	GGCC	5 cut(s)	95, 288, 768, 794, 1281
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	3 cut(s)	508, 736, 803
BtsIMutI	CAGTG	1 cut(s)	1149
Cac8I	GCNNGC	3 cut(s)	93, 1208, 1266
CfoI	GCGC	4 cut(s)	254, 275, 676, 860
Cfr10I	RCCGGY	2 cut(s)	91, 508
CseI	GACGC	2 cut(s)	73, 97
Csp6I	GTAC	1 cut(s)	1216
CviAII	CATG	6 cut(s)	394, 808, 1044, 1061, 1144, 1422
CviQI	GTAC	1 cut(s)	1216
DdeI	CTNAG	5 cut(s)	231, 624, 861, 1358, 1392
DpnI	GATC	4 cut(s)	9, 139, 184, 327
DpnII	GATC	4 cut(s)	7, 137, 182, 325
DrdI	GACNNNNNNGTC	1 cut(s)	388
DseDI	GACNNNNNNGTC	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	1198
Eco105I	TACGTA	1 cut(s)	779
Eco24I	GRGCYC	1 cut(s)	1200
Eco31I	GGTCTC	2 cut(s)	236, 374
Eco32I	GATATC	1 cut(s)	1247
Eco47I	GGWCC	6 cut(s)	76, 150, 390, 475, 1047, 1179
Eco53kI	GAGCTC	1 cut(s)	1198
Eco57I	CTGAAG	1 cut(s)	935
Eco91I	GGTNACC	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	1198
EcoO109I	RGGNCCY	1 cut(s)	475
EcoO65I	GGTNACC	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	3 cut(s)	467, 479, 794
EcoRV	GATATC	1 cut(s)	1247
EcoT22I	ATGCAT	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	1200
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	6 cut(s)	397, 811, 1047, 1064, 1147, 1425
FaqI	GGGAC	3 cut(s)	461, 655, 1033
FatI	CATG	6 cut(s)	393, 807, 1043, 1060, 1143, 1421
FauI	CCCGC	4 cut(s)	324, 354, 672, 944
FblI	GTMKAC	1 cut(s)	775
Fnu4HI	GCNGC	9 cut(s)	44, 56, 59, 276, 404, 407, 677, 1026, 1141
FokI	GGATG	3 cut(s)	515, 743, 790
FriOI	GRGCYC	1 cut(s)	1200
Fsp4HI	GCNGC	9 cut(s)	44, 56, 59, 276, 404, 407, 677, 1026, 1141
FspBI	CTAG	1 cut(s)	1427
GlaI	GCGC	4 cut(s)	253, 274, 675, 859
GluI	GCNGC	9 cut(s)	44, 56, 59, 276, 404, 407, 677, 1026, 1141
GsaI	CCCAGC	2 cut(s)	180, 673
GsuI	CTGGAG	2 cut(s)	232, 817
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	5 cut(s)	95, 288, 768, 794, 1281
HgaI	GACGC	2 cut(s)	73, 97
HhaI	GCGC	4 cut(s)	254, 275, 676, 860
Hin1I	GRCGYC	2 cut(s)	65, 89
Hin1II	CATG	6 cut(s)	397, 811, 1047, 1064, 1147, 1425
Hin6I	GCGC	4 cut(s)	252, 273, 674, 858
HinP1I	GCGC	4 cut(s)	252, 273, 674, 858
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	3 cut(s)	307, 535, 979
HphI	GGTGA	3 cut(s)	427, 469, 1305
Hpy166II	GTNNAC	3 cut(s)	124, 776, 911
Hpy188I	TCNGA	7 cut(s)	163, 238, 534, 901, 1230, 1395, 1415
Hpy188III	TCNNGA	4 cut(s)	373, 863, 888, 1111
Hpy8I	GTNNAC	3 cut(s)	124, 776, 911
Hpy99I	CGWCG	4 cut(s)	67, 148, 226, 242
HpyAV	CCTTC	2 cut(s)	466, 1389
HpyCH4III	ACNGT	3 cut(s)	587, 935, 1013
HpyCH4IV	ACGT	3 cut(s)	120, 429, 778
HpyCH4V	TGCA	9 cut(s)	397, 506, 517, 734, 1043, 1073, 1091, 1143, 1167
HpyF10VI	GCNNNNNNNGC	9 cut(s)	52, 64, 88, 97, 106, 186, 394, 403, 1034
HpyF3I	CTNAG	5 cut(s)	231, 624, 861, 1358, 1392
HpySE526I	ACGT	3 cut(s)	120, 429, 778
Hsp92I	GRCGYC	2 cut(s)	65, 89
Hsp92II	CATG	6 cut(s)	397, 811, 1047, 1064, 1147, 1425
HspAI	GCGC	4 cut(s)	252, 273, 674, 858
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	4 cut(s)	7, 137, 182, 325
LmnI	GCTCC	3 cut(s)	270, 1340, 1415
Lsp1109I	GCAGC	6 cut(s)	55, 390, 393, 688, 1012, 1127
LweI	GCATC	6 cut(s)	493, 721, 743, 953, 1082, 1427
MaeI	CTAG	1 cut(s)	1427
MaeII	ACGT	3 cut(s)	120, 429, 778
MaeIII	GTNAC	4 cut(s)	433, 619, 827, 1333
MalI	GATC	4 cut(s)	9, 139, 184, 327
MboI	GATC	4 cut(s)	7, 137, 182, 325
MfeI	CAATTG	1 cut(s)	1329
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	1 cut(s)	1200
MluCI	AATT	3 cut(s)	226, 723, 1329
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	8 cut(s)	78, 256, 290, 321, 741, 757, 895, 1076
Mph1103I	ATGCAT	1 cut(s)	736
MroNI	GCCGGC	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	1059
MspA1I	CMGCKG	1 cut(s)	679
MspR9I	CCNGG	5 cut(s)	97, 385, 469, 481, 796
MunI	CAATTG	1 cut(s)	1329
Mva1269I	GAATGC	2 cut(s)	117, 607
MvaI	CCWGG	3 cut(s)	469, 481, 796
MvnI	CGCG	3 cut(s)	148, 273, 858
MwoI	GCNNNNNNNGC	9 cut(s)	52, 64, 88, 97, 106, 186, 394, 403, 1034
NaeI	GCCGGC	1 cut(s)	93
NciI	CCSGG	2 cut(s)	97, 385
NdeII	GATC	4 cut(s)	7, 137, 182, 325
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	6 cut(s)	397, 811, 1047, 1064, 1147, 1425
NlaIV	GGNNCC	3 cut(s)	289, 477, 1049
NmuCI	GTSAC	3 cut(s)	433, 827, 1333
NsiI	ATGCAT	1 cut(s)	736
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PctI	GAATGC	2 cut(s)	117, 607
PdiI	GCCGGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	3 cut(s)	307, 535, 979
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	9 cut(s)	45, 57, 60, 277, 405, 408, 678, 1027, 1142
Ple19I	CGATCG	2 cut(s)	140, 328
Ppu21I	YACGTR	1 cut(s)	779
PpuMI	RGGWCCY	1 cut(s)	475
PshAI	GACNNNNGTC	2 cut(s)	895, 1331
Psp124BI	GAGCTC	1 cut(s)	1200
Psp5II	RGGWCCY	1 cut(s)	475
Psp6I	CCWGG	3 cut(s)	467, 479, 794
PspEI	GGTNACC	1 cut(s)	433
PspFI	CCCAGC	2 cut(s)	176, 669
PspGI	CCWGG	3 cut(s)	467, 479, 794
PspN4I	GGNNCC	3 cut(s)	289, 477, 1049
PspPPI	RGGWCCY	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	1093
PsuI	RGATCY	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	431
PvuI	CGATCG	2 cut(s)	140, 328
RsaI	GTAC	1 cut(s)	1217
RsaNI	GTAC	1 cut(s)	1216
RseI	CAYNNNNRTG	1 cut(s)	1059
SacI	GAGCTC	1 cut(s)	1200
SatI	GCNGC	9 cut(s)	44, 56, 59, 276, 404, 407, 677, 1026, 1141
Sau3AI	GATC	4 cut(s)	7, 137, 182, 325
ScrFI	CCNGG	5 cut(s)	97, 385, 469, 481, 796
SduI	GDGCHC	1 cut(s)	1200
SfaNI	GCATC	6 cut(s)	493, 721, 743, 953, 1082, 1427
SfcI	CTRYAG	1 cut(s)	1089
SinI	GGWCC	6 cut(s)	76, 150, 390, 475, 1047, 1179
SmiMI	CAYNNNNRTG	1 cut(s)	1059
SmlI	CTYRAG	1 cut(s)	1135
SmoI	CTYRAG	1 cut(s)	1135
SnaBI	TACGTA	1 cut(s)	779
Sse9I	AATT	3 cut(s)	226, 723, 1329
SspMI	CTAG	1 cut(s)	1427
SstI	GAGCTC	1 cut(s)	1200
StyD4I	CCNGG	5 cut(s)	95, 383, 467, 479, 794
TaaI	ACNGT	3 cut(s)	587, 935, 1013
TaiI	ACGT	3 cut(s)	123, 432, 781
TaqI	TCGA	2 cut(s)	105, 207
TaqII	GACCGA	1 cut(s)	1110
TasI	AATT	3 cut(s)	226, 723, 1329
TauI	GCSGC	3 cut(s)	58, 61, 278
TfiI	GAWTC	3 cut(s)	307, 535, 979
TscAI	CASTG	1 cut(s)	1156
TseFI	GTSAC	3 cut(s)	433, 827, 1333
TseI	GCWGC	6 cut(s)	43, 403, 406, 676, 1025, 1140
Tsp45I	GTSAC	3 cut(s)	433, 827, 1333
TspDTI	ATGAA	6 cut(s)	160, 356, 434, 792, 1049, 1365
TspGWI	ACGGA	2 cut(s)	1094, 1335
TspRI	CASTG	1 cut(s)	1156
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	6 cut(s)	76, 150, 390, 475, 1047, 1179
XapI	RAATTY	2 cut(s)	226, 723
XmiI	GTMKAC	1 cut(s)	775
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	1 cut(s)	1427
Zsp2I	ATGCAT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.