AT2G03420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015378
Physical Location & Seq
Reverse (-)
1033557 .. 1035969
2413 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03420.1

Sequence Viewer

Length: 513 bp
ATGATGCAAACAAAAATCTCTTCTTTCTCTCGACCAAGCTTTAGTCTCTATGAACCAAGAGTAATTCATCATCCTCGTATCTCCATGGCTCTATCATCATCAGCACCATCCCCGTTTCACCATCTTCTCTGCAAGTCCACCTTCCCTCTCGCTGCCTCACTCACCCTTCTCCTCTCTCCTTGTACCGCTGAAGCAGGCTTAATGTCGGGATCTCCCGGTATAGAATCAGTTCCAGGTCCTGAATTACCAAAAATCGAGTTCCTTGACCGTTTCAATGCAAAAAACCAGAAGTTCTACGCAGAGAACGATGCCAGATTCAAAGATTCTCCACTTCTCAAGAAATTACTTGAGAATTCCAAACTCAACAAAGAAAAGAATGAAAGAGAGATTCAAGACAAATATTGTCTGAGAGGAGCAGAATGGGGAGTAGGAGATTGCTCAACCACAGGAATGACAGATGAAGAAAAGGAGAAATTCATCACAATGTTGAAAAAGAAGACTGGTGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.03

Weight (kDa)

8.63

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03420
fragaria_vesca FvH4_4g30480
malus_domestica MD13G1065900.v1.1 MD16G1064700.v1.1
prunus_persica Prupe.1G282200_v2.0.a1
pyrus_communis pycom13g05810 pycom16g05650
rosa_chinensis RchiOBHm_Chr4g0438851
rosa_laevigata RLG00000006325
rosa_rugosa Rorug04G0313400
rosa_samantha Rh4AG364500 Rh4BG375600 Rh4CG389700 Rh4DG370300
rosa_wichuraiana Rw0G007260 Rw0G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 217
AcsI RAATTY 2 cut(s) 352, 473
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 1 cut(s) 184
AgsI TTSAA 5 cut(s) 274, 319, 392, 490, 509
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 217
AlwNI CAGNNNCTG 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 352, 473
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 110, 154
AvaII GGWCC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 503
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 115, 129
BciT130I CCWGG 1 cut(s) 234
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 50
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 2 cut(s) 216, 234
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmrFI CCNGG 2 cut(s) 216, 234
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 503
BpuEI CTTGAG 2 cut(s) 320, 368
BpuMI CCSGG 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 505
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 70, 107
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 505
BseRI GAGGAG 2 cut(s) 161, 426
BseXI GCAGC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 209
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 399
BspPI GGATC 1 cut(s) 217
BsrI ACTGG 1 cut(s) 505
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 407
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 70, 107
BstKTI GATC 1 cut(s) 212
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 2 cut(s) 214, 232
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 70, 107
Cac8I GCNNGC 1 cut(s) 196
CaiI CAGNNNCTG 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 183
CviAII CATG 1 cut(s) 85
CviJI RGCY 3 cut(s) 39, 89, 198
CviKI_1 RGCY 3 cut(s) 39, 89, 198
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 407
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 88
FaiI YATR 3 cut(s) 51, 86, 221
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 57, 94
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
HapII CCGG 1 cut(s) 216
Hin1II CATG 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 4 cut(s) 224, 315, 323, 388
HpaII CCGG 1 cut(s) 216
HphI GGTGA 2 cut(s) 110, 154
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 5 cut(s) 30, 207, 239, 337, 392
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 151, 176
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 7, 132, 278
HpyF3I CTNAG 1 cut(s) 407
Hsp92II CATG 1 cut(s) 88
Kzo9I GATC 1 cut(s) 209
LmnI GCTCC 1 cut(s) 413
LpnPI CCDG 9 cut(s) 180, 219, 229, 246, 252, 299, 325, 432, 486
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 298
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 4 cut(s) 12, 116, 473, 508
MflI RGATCY 1 cut(s) 209
MluCI AATT 5 cut(s) 63, 242, 341, 352, 473
MnlI CCTC 5 cut(s) 84, 156, 166, 182, 404
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 2 cut(s) 449, 482
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 2 cut(s) 216, 234
MvaI CCWGG 1 cut(s) 234
NciI CCSGG 1 cut(s) 216
NcoI CCATGG 1 cut(s) 84
NdeII GATC 1 cut(s) 209
NlaIII CATG 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 4 cut(s) 224, 315, 323, 388
PkrI GCNGC 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 1 cut(s) 236
PspPPI RGGWCCY 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 2 cut(s) 449, 482
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 209
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 216, 234
SetI ASST 3 cut(s) 41, 143, 238
SfaNI GCATC 1 cut(s) 298
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 449, 482
SmlI CTYRAG 2 cut(s) 335, 347
SmoI CTYRAG 2 cut(s) 335, 347
Sse9I AATT 5 cut(s) 63, 242, 341, 352, 473
SsiI CCGC 1 cut(s) 186
SspI AATATT 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 214, 232
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 2 cut(s) 31, 255
TasI AATT 5 cut(s) 63, 242, 341, 352, 473
TfiI GAWTC 4 cut(s) 224, 315, 323, 388
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 5 cut(s) 56, 66, 393, 466, 474
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 2 cut(s) 352, 473
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.