Rh4BG375600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015378
Physical Location & Seq
Forward (+)
53135104 .. 53136560
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG375600.1

Sequence Viewer

Length: 699 bp
ATGTGGCGTTTTTGTCAAGTAGATGATATTTGTTGTGGTTGTCTTGATATGAACCATAAAAATAAAATTATCTTTGTTGAGCTATCTTTTGTTGAGCTTGGGCTGTGGTATAGTGAGGGGAACCACACCATGGTTTCCTCTTCTATCTCAGCTCTCTCTCATTCTTTCTCCCATGTTTCATGTACTAATTTGGATGTGTGTGAAAAACCCGGTAACCCTCTTAAAAAACTAGTCCAAATTAAGAGTCGCGGTACAGTTTGTTCTAGTTCTAGTGCTCAAGGTTCTTCTTCTTTACAATCTCGCCGAGGTGTTCTACATAGCTCGGTTGCTTTGGCTGCTTCAGCAGCTGTTCTTTTCTGGTCCAGTCCAGCTAGAGCTGGATTTCTATCGGGATCGACCGGGATAGAATCAATTCCAGGTCCTGAATTACCCAAAGTGGAGTTCCTTGACCGCTTCAATGAAGAAAACCAGAAAAAGTATGCAGAAAATGATGCGCGATTCAAATCATCTCCATTACTCCAGGGGCTACTAGAAAAATCCAAGCTCAACAAAGAGAAGAATAGTAGGGAAACTCAAGACAAGTACTGCCTACGCGGAGCAGAATGGGGAGTTGGAGATTGCTCAGCGGAGGGAATGAAGCCCGACGAGAGAGACAAGTTCATTGCAATGTTGAAGGAGAGGGCTGGTGTCAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.53

Weight (kDa)

8.04

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03420
fragaria_vesca FvH4_4g30480
malus_domestica MD13G1065900.v1.1 MD16G1064700.v1.1
prunus_persica Prupe.1G282200_v2.0.a1
pyrus_communis pycom13g05810 pycom16g05650
rosa_chinensis RchiOBHm_Chr4g0438851
rosa_laevigata RLG00000006325
rosa_rugosa Rorug04G0313400
rosa_samantha Rh4AG364500 Rh4BG375600 Rh4CG389700 Rh4DG370300
rosa_wichuraiana Rw0G007260 Rw0G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 130
AccII CGCG 3 cut(s) 249, 496, 594
AciI CCGC 4 cut(s) 249, 451, 594, 626
AclWI GGATC 1 cut(s) 400
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 3 cut(s) 184, 253, 584
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 3 cut(s) 457, 502, 673
AhlI ACTAGT 1 cut(s) 229
AjnI CCWGG 2 cut(s) 415, 519
AjuI GAANNNNNNNTTGG 4 cut(s) 425, 457, 594, 626
AluBI AGCT 8 cut(s) 82, 97, 152, 321, 347, 371, 377, 544
AluI AGCT 8 cut(s) 82, 97, 152, 321, 347, 371, 377, 544
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 645
AlwI GGATC 1 cut(s) 400
AlwNI CAGNNNCTG 2 cut(s) 347, 422
ApeKI GCWGC 2 cut(s) 335, 344
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 2 cut(s) 360, 419
AsuC2I CCSGG 2 cut(s) 210, 400
AvaII GGWCC 2 cut(s) 360, 419
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 322, 356
BciT130I CCWGG 2 cut(s) 417, 521
BcnI CCSGG 2 cut(s) 210, 400
BcoDI GTCTC 1 cut(s) 645
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 5 cut(s) 230, 264, 270, 372, 530
BisI GCNGC 2 cut(s) 336, 345
BlpI GCTNAGC 1 cut(s) 622
BlsI GCNGC 2 cut(s) 337, 346
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 4 cut(s) 210, 400, 417, 521
Bme18I GGWCC 2 cut(s) 360, 419
BmgT120I GGNCC 2 cut(s) 360, 419
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 4 cut(s) 210, 400, 417, 521
BmsI GCATC 1 cut(s) 481
BpmI CTGGAG 1 cut(s) 503
Bpu1102I GCTNAGC 1 cut(s) 622
BpuEI CTTGAG 2 cut(s) 261, 558
BpuMI CCSGG 2 cut(s) 210, 400
BsaBI GATNNNNATC 2 cut(s) 385, 502
BsaJI CCNNGG 3 cut(s) 129, 304, 520
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 363
Bse3DI GCAATG 2 cut(s) 660, 672
Bse8I GATNNNNATC 2 cut(s) 385, 502
BseBI CCWGG 2 cut(s) 417, 521
BseDI CCNNGG 3 cut(s) 129, 304, 520
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 2 cut(s) 385, 502
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMI GCAATG 2 cut(s) 660, 672
BseMII CTCAG 2 cut(s) 162, 636
BseNI ACTGG 1 cut(s) 363
BseXI GCAGC 2 cut(s) 322, 356
Bsh1236I CGCG 3 cut(s) 249, 496, 594
Bsh1285I CGRYCG 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 2 cut(s) 210, 399
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 645
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 1 cut(s) 392
Bsp1720I GCTNAGC 1 cut(s) 622
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 4 cut(s) 249, 451, 594, 626
BspCNI CTCAG 2 cut(s) 161, 635
BspFNI CGCG 3 cut(s) 249, 496, 594
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 1 cut(s) 400
BsrDI GCAATG 2 cut(s) 660, 672
BsrI ACTGG 1 cut(s) 363
BssECI CCNNGG 3 cut(s) 129, 304, 520
BssMI GATC 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 2 cut(s) 417, 521
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 148, 622
BstDSI CCRYGG 1 cut(s) 129
BstEII GGTNACC 1 cut(s) 212
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 3 cut(s) 249, 496, 594
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 1 cut(s) 395
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 1 cut(s) 392
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 3 cut(s) 335, 341, 344
BstNI CCWGG 2 cut(s) 417, 521
BstPI GGTNACC 1 cut(s) 212
BstSCI CCNGG 4 cut(s) 208, 398, 415, 519
BstUI CGCG 3 cut(s) 249, 496, 594
BstV1I GCAGC 2 cut(s) 322, 356
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 199
CaiI CAGNNNCTG 2 cut(s) 347, 422
CfoI GCGC 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 360, 419
Csp6I GTAC 3 cut(s) 183, 252, 583
CviAII CATG 3 cut(s) 130, 173, 180
CviQI GTAC 3 cut(s) 183, 252, 583
DdeI CTNAG 2 cut(s) 148, 622
DpnI GATC 1 cut(s) 394
DpnII GATC 1 cut(s) 392
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 360, 419
Eco57I CTGAAG 1 cut(s) 324
Eco91I GGTNACC 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 419
EcoO65I GGTNACC 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 415, 519
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 3 cut(s) 133, 176, 183
FaiI YATR 8 cut(s) 50, 57, 111, 131, 174, 181, 318, 480
FatI CATG 3 cut(s) 129, 172, 179
Fnu4HI GCNGC 2 cut(s) 336, 345
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 336, 345
FspBI CTAG 5 cut(s) 230, 264, 270, 372, 530
GlaI GCGC 1 cut(s) 495
GluI GCNGC 2 cut(s) 336, 345
GsuI CTGGAG 1 cut(s) 503
HapII CCGG 2 cut(s) 210, 399
HhaI GCGC 1 cut(s) 496
Hin1II CATG 3 cut(s) 133, 176, 183
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HinfI GANTC 3 cut(s) 244, 407, 498
HpaII CCGG 2 cut(s) 210, 399
Hpy188III TCNNGA 4 cut(s) 44, 390, 422, 575
Hpy99I CGWCG 1 cut(s) 647
HpyAV CCTTC 1 cut(s) 667
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 2 cut(s) 482, 665
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 341, 344
HpyF3I CTNAG 2 cut(s) 148, 622
Hsp92II CATG 3 cut(s) 133, 176, 183
HspAI GCGC 1 cut(s) 494
Kzo9I GATC 1 cut(s) 392
LmnI GCTCC 1 cut(s) 596
Lsp1109I GCAGC 2 cut(s) 322, 356
LweI GCATC 1 cut(s) 481
MaeI CTAG 5 cut(s) 230, 264, 270, 372, 530
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 394
MboI GATC 1 cut(s) 392
MboII GAAGA 5 cut(s) 132, 276, 279, 473, 568
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 5 cut(s) 66, 187, 237, 411, 425
MlyI GAGTC 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 6 cut(s) 109, 148, 228, 299, 622, 672
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 2 cut(s) 222, 240
MslI CAYNNNNRTG 1 cut(s) 665
MspA1I CMGCKG 2 cut(s) 347, 626
MspI CCGG 2 cut(s) 210, 399
MspR9I CCNGG 4 cut(s) 210, 400, 417, 521
MvaI CCWGG 2 cut(s) 417, 521
MvnI CGCG 3 cut(s) 249, 496, 594
MwoI GCNNNNNNNGC 3 cut(s) 335, 341, 344
NciI CCSGG 2 cut(s) 210, 400
NcoI CCATGG 1 cut(s) 129
NdeII GATC 1 cut(s) 392
NlaIII CATG 3 cut(s) 133, 176, 183
NlaIV GGNNCC 1 cut(s) 122
NmeAIII GCCGAG 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 407, 498
PflMI CCANNNNNTGG 1 cut(s) 130
PkrI GCNGC 2 cut(s) 337, 346
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PpuMI RGGWCCY 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 2 cut(s) 415, 519
PspEI GGTNACC 1 cut(s) 212
PspGI CCWGG 2 cut(s) 415, 519
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 2 cut(s) 360, 419
PspPPI RGGWCCY 1 cut(s) 419
PsrI GAACNNNNNNTAC 2 cut(s) 244, 276
PstNI CAGNNNCTG 2 cut(s) 347, 422
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 3 cut(s) 184, 253, 584
RsaNI GTAC 3 cut(s) 183, 252, 583
RseI CAYNNNNRTG 1 cut(s) 665
SaqAI TTAA 2 cut(s) 222, 240
SatI GCNGC 2 cut(s) 336, 345
Sau3AI GATC 1 cut(s) 392
Sau96I GGNCC 2 cut(s) 360, 419
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 1 cut(s) 253
ScrFI CCNGG 4 cut(s) 210, 400, 417, 521
SduI GDGCHC 1 cut(s) 277
SfaNI GCATC 1 cut(s) 481
SinI GGWCC 2 cut(s) 360, 419
SmiMI CAYNNNNRTG 1 cut(s) 665
SmlI CTYRAG 2 cut(s) 276, 573
SmoI CTYRAG 2 cut(s) 276, 573
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 5 cut(s) 66, 187, 237, 411, 425
SsiI CCGC 4 cut(s) 249, 451, 594, 626
SspMI CTAG 5 cut(s) 230, 264, 270, 372, 530
StyD4I CCNGG 4 cut(s) 208, 398, 415, 519
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 395
TasI AATT 5 cut(s) 66, 187, 237, 411, 425
TatI WGTACW 2 cut(s) 182, 582
TfiI GAWTC 2 cut(s) 407, 498
Tru1I TTAA 2 cut(s) 222, 240
Tru9I TTAA 2 cut(s) 222, 240
TseI GCWGC 2 cut(s) 335, 344
TspDTI ATGAA 5 cut(s) 65, 168, 474, 649, 650
Van91I CCANNNNNTGG 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 360, 419
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 5 cut(s) 230, 264, 270, 372, 530
ZrmI AGTACT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.