Rh4CG389700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0015378
Physical Location & Seq
Forward (+)
64036760 .. 64038087
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG389700.1

Sequence Viewer

Length: 570 bp
ATGGTTTCCTCTTCTATCTCAGCTCTCTCTCATTCTTTCTCCCATGTTTCATGTACTAATTTGGATGTGTGTGAAAAACCCGGTAACCCTCTTAAAAAACTAGTCCAAATTAAGAGTCGCGGTACAGTTTGTTCTAGTTCTAGTGCTCAAGGTTCTTCTTCTTTACAATCTCGCCGAGGTGTTCTACATAGCTCGGTTGCTTTGGCTGCTTCAGCAGCTGTTCTTTTCTGGTCCAGTCCAGCTAGAGCTGGATTTCTATCGGGATCGACCGGGATAGAATCAATTCCAGGTCCTGAATTACCCAAAGTGGAGTTCCTTGACCGCTTCAATGAAGAAAACCAGAAAAAGTATGCAGAAAATGATGCGCGATTCAAATCATCTCCATTACTCCAGGGGCTACTAGAAAAATCCAAGCTCAACAAAGAGAAGAATAGTAGGGAAACTCAAGACAAGTACTGCCTACGCGGAGCAGAATGGGGAGTTGGAGATTGCTCAGCGGAGGGAATGAAGCCCGACGAGAGAGACAAGTTCATTGCAATGTTGAAGGAGAGGGCTGGTGTCAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.46

Weight (kDa)

8.97

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03420
fragaria_vesca FvH4_4g30480
malus_domestica MD13G1065900.v1.1 MD16G1064700.v1.1
prunus_persica Prupe.1G282200_v2.0.a1
pyrus_communis pycom13g05810 pycom16g05650
rosa_chinensis RchiOBHm_Chr4g0438851
rosa_laevigata RLG00000006325
rosa_rugosa Rorug04G0313400
rosa_samantha Rh4AG364500 Rh4BG375600 Rh4CG389700 Rh4DG370300
rosa_wichuraiana Rw0G007260 Rw0G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 120, 367, 465
AciI CCGC 4 cut(s) 120, 322, 465, 497
AclWI GGATC 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 3 cut(s) 55, 124, 455
AgsI TTSAA 3 cut(s) 328, 373, 544
AhlI ACTAGT 1 cut(s) 100
AjnI CCWGG 2 cut(s) 286, 390
AjuI GAANNNNNNNTTGG 4 cut(s) 296, 328, 465, 497
AluBI AGCT 6 cut(s) 23, 192, 218, 242, 248, 415
AluI AGCT 6 cut(s) 23, 192, 218, 242, 248, 415
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 516
AlwI GGATC 1 cut(s) 271
AlwNI CAGNNNCTG 2 cut(s) 218, 293
ApeKI GCWGC 2 cut(s) 206, 215
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
Asp700I GAANNNNTTC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 2 cut(s) 231, 290
AsuC2I CCSGG 2 cut(s) 81, 271
AvaII GGWCC 2 cut(s) 231, 290
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 193, 227
BciT130I CCWGG 2 cut(s) 288, 392
BcnI CCSGG 2 cut(s) 81, 271
BcoDI GTCTC 1 cut(s) 516
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 5 cut(s) 101, 135, 141, 243, 401
BisI GCNGC 2 cut(s) 207, 216
BlpI GCTNAGC 1 cut(s) 493
BlsI GCNGC 2 cut(s) 208, 217
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 4 cut(s) 81, 271, 288, 392
Bme18I GGWCC 2 cut(s) 231, 290
BmgT120I GGNCC 2 cut(s) 231, 290
BmrFI CCNGG 4 cut(s) 81, 271, 288, 392
BmsI GCATC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 374
Bpu1102I GCTNAGC 1 cut(s) 493
BpuEI CTTGAG 2 cut(s) 132, 429
BpuMI CCSGG 2 cut(s) 81, 271
BsaBI GATNNNNATC 2 cut(s) 256, 373
BsaJI CCNNGG 2 cut(s) 175, 391
Bse1I ACTGG 1 cut(s) 234
Bse3DI GCAATG 2 cut(s) 531, 543
Bse8I GATNNNNATC 2 cut(s) 256, 373
BseBI CCWGG 2 cut(s) 288, 392
BseDI CCNNGG 2 cut(s) 175, 391
BseGI GGATG 1 cut(s) 70
BseJI GATNNNNATC 2 cut(s) 256, 373
BseMI GCAATG 2 cut(s) 531, 543
BseMII CTCAG 2 cut(s) 33, 507
BseNI ACTGG 1 cut(s) 234
BseXI GCAGC 2 cut(s) 193, 227
Bsh1236I CGCG 3 cut(s) 120, 367, 465
Bsh1285I CGRYCG 1 cut(s) 270
BsiEI CGRYCG 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 2 cut(s) 81, 270
BsmAI GTCTC 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 263
Bsp1720I GCTNAGC 1 cut(s) 493
BspACI CCGC 4 cut(s) 120, 322, 465, 497
BspCNI CTCAG 2 cut(s) 32, 506
BspFNI CGCG 3 cut(s) 120, 367, 465
BspPI GGATC 1 cut(s) 271
BsrDI GCAATG 2 cut(s) 531, 543
BsrI ACTGG 1 cut(s) 234
BssECI CCNNGG 2 cut(s) 175, 391
BssMI GATC 1 cut(s) 263
Bst2UI CCWGG 2 cut(s) 288, 392
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 19, 493
BstEII GGTNACC 1 cut(s) 83
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 3 cut(s) 120, 367, 465
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 1 cut(s) 263
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 3 cut(s) 206, 212, 215
BstNI CCWGG 2 cut(s) 288, 392
BstPI GGTNACC 1 cut(s) 83
BstSCI CCNGG 4 cut(s) 79, 269, 286, 390
BstUI CGCG 3 cut(s) 120, 367, 465
BstV1I GCAGC 2 cut(s) 193, 227
BtsCI GGATG 1 cut(s) 70
CaiI CAGNNNCTG 2 cut(s) 218, 293
CfoI GCGC 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 231, 290
Csp6I GTAC 3 cut(s) 54, 123, 454
CviAII CATG 2 cut(s) 44, 51
CviQI GTAC 3 cut(s) 54, 123, 454
DdeI CTNAG 2 cut(s) 19, 493
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco47I GGWCC 2 cut(s) 231, 290
Eco57I CTGAAG 1 cut(s) 195
Eco91I GGTNACC 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 290
EcoO65I GGTNACC 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 286, 390
FaeI CATG 2 cut(s) 47, 54
FaiI YATR 4 cut(s) 45, 52, 189, 351
FatI CATG 2 cut(s) 43, 50
Fnu4HI GCNGC 2 cut(s) 207, 216
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 207, 216
FspBI CTAG 5 cut(s) 101, 135, 141, 243, 401
GlaI GCGC 1 cut(s) 366
GluI GCNGC 2 cut(s) 207, 216
GsuI CTGGAG 1 cut(s) 374
HapII CCGG 2 cut(s) 81, 270
HhaI GCGC 1 cut(s) 367
Hin1II CATG 2 cut(s) 47, 54
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HinfI GANTC 3 cut(s) 115, 278, 369
HpaII CCGG 2 cut(s) 81, 270
Hpy188III TCNNGA 3 cut(s) 261, 293, 446
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 1 cut(s) 538
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 353, 536
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 212, 215
HpyF3I CTNAG 2 cut(s) 19, 493
Hsp92II CATG 2 cut(s) 47, 54
HspAI GCGC 1 cut(s) 365
Kzo9I GATC 1 cut(s) 263
LmnI GCTCC 1 cut(s) 467
Lsp1109I GCAGC 2 cut(s) 193, 227
LweI GCATC 1 cut(s) 352
MaeI CTAG 5 cut(s) 101, 135, 141, 243, 401
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 265
MboI GATC 1 cut(s) 263
MboII GAAGA 5 cut(s) 3, 147, 150, 344, 439
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 4 cut(s) 58, 108, 282, 296
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 5 cut(s) 19, 99, 170, 493, 543
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 2 cut(s) 93, 111
MslI CAYNNNNRTG 1 cut(s) 536
MspA1I CMGCKG 2 cut(s) 218, 497
MspI CCGG 2 cut(s) 81, 270
MspR9I CCNGG 4 cut(s) 81, 271, 288, 392
MvaI CCWGG 2 cut(s) 288, 392
MvnI CGCG 3 cut(s) 120, 367, 465
MwoI GCNNNNNNNGC 3 cut(s) 206, 212, 215
NciI CCSGG 2 cut(s) 81, 271
NdeII GATC 1 cut(s) 263
NlaIII CATG 2 cut(s) 47, 54
NmeAIII GCCGAG 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 2 cut(s) 278, 369
PkrI GCNGC 2 cut(s) 208, 217
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PpuMI RGGWCCY 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 290
Psp6I CCWGG 2 cut(s) 286, 390
PspEI GGTNACC 1 cut(s) 83
PspGI CCWGG 2 cut(s) 286, 390
PspPI GGNCC 2 cut(s) 231, 290
PspPPI RGGWCCY 1 cut(s) 290
PsrI GAACNNNNNNTAC 2 cut(s) 115, 147
PstNI CAGNNNCTG 2 cut(s) 218, 293
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 3 cut(s) 55, 124, 455
RsaNI GTAC 3 cut(s) 54, 123, 454
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 2 cut(s) 93, 111
SatI GCNGC 2 cut(s) 207, 216
Sau3AI GATC 1 cut(s) 263
Sau96I GGNCC 2 cut(s) 231, 290
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 4 cut(s) 81, 271, 288, 392
SduI GDGCHC 1 cut(s) 148
SetI ASST 9 cut(s) 25, 154, 181, 194, 220, 244, 250, 292, 417
SfaNI GCATC 1 cut(s) 352
SinI GGWCC 2 cut(s) 231, 290
SmiMI CAYNNNNRTG 1 cut(s) 536
SmlI CTYRAG 2 cut(s) 147, 444
SmoI CTYRAG 2 cut(s) 147, 444
SpeI ACTAGT 1 cut(s) 100
Sse9I AATT 4 cut(s) 58, 108, 282, 296
SsiI CCGC 4 cut(s) 120, 322, 465, 497
SspMI CTAG 5 cut(s) 101, 135, 141, 243, 401
StyD4I CCNGG 4 cut(s) 79, 269, 286, 390
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 266
TasI AATT 4 cut(s) 58, 108, 282, 296
TatI WGTACW 2 cut(s) 53, 453
TfiI GAWTC 2 cut(s) 278, 369
Tru1I TTAA 2 cut(s) 93, 111
Tru9I TTAA 2 cut(s) 93, 111
TseI GCWGC 2 cut(s) 206, 215
TspDTI ATGAA 4 cut(s) 39, 345, 520, 521
VpaK11BI GGWCC 2 cut(s) 231, 290
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 5 cut(s) 101, 135, 141, 243, 401
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.