Prupe.1G282200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015378
Physical Location & Seq
Reverse (-)
28501190 .. 28502574
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G282200.1

Sequence Viewer

Length: 582 bp
ATGGTTTCCTCTTCTTCATTCTCAGCTCTCTCTCATCCTTCCTTTCAAATTCCATATACCAATTTGGATTTCTGTGAACAACCCAGTAACTTTCATAACAGAGTTCAAATTAAGAGCTATAGAAGACCCGCCACAGTCGTTGTTTCTTCTAGTTCTTGTCAAAGGTCTTCTCCTTCACCATCTCGCCGAGGTCTTCTTCATGGCTCTGTTTCTCTGGCTGTTTCAGCAGCCATTCTTCTCTGCTCAGGTCCAGCTGAAGCCGGATTTCTATCAGGATCGACCGGGATAGAATCAATTCCTGGTCCTGAGTTGCCTCAAGTCGACTTTCTTAAGCGCTTCAATGAAGAAAACCAGAAGAAGTATGCTGACAATGATGCAAGATTCAAATCAACTCCATTGCTCAAGGGGCTACTAGAAAAATCCAAGCTGAACAAAGAAAAGAATAGTAAAGAAATTCAAGACAAGTACTGCATACGTGGGGCAGAGTGGGGAGTTGGAGATTGCTCGACAGAGGGAATGTCACCTGACGAGAAAGACAAGTTCATTGCTATGTTGAAGGAGAAGGCTGGTGTCAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.11

Weight (kDa)

8.77

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03420
fragaria_vesca FvH4_4g30480
malus_domestica MD13G1065900.v1.1 MD16G1064700.v1.1
prunus_persica Prupe.1G282200_v2.0.a1
pyrus_communis pycom13g05810 pycom16g05650
rosa_chinensis RchiOBHm_Chr4g0438851
rosa_laevigata RLG00000006325
rosa_rugosa Rorug04G0313400
rosa_samantha Rh4AG364500 Rh4BG375600 Rh4CG389700 Rh4DG370300
rosa_wichuraiana Rw0G007260 Rw0G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 321
AciI CCGC 1 cut(s) 129
AclWI GGATC 1 cut(s) 283
AcsI RAATTY 2 cut(s) 48, 453
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 1 cut(s) 467
AfeI AGCGCT 1 cut(s) 335
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 6 cut(s) 47, 107, 340, 385, 458, 556
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 4 cut(s) 26, 117, 254, 427
AluI AGCT 4 cut(s) 26, 117, 254, 427
AlwI GGATC 1 cut(s) 283
Aor51HI AGCGCT 1 cut(s) 335
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 2 cut(s) 48, 453
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 2 cut(s) 248, 302
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 168, 513
AvaII GGWCC 2 cut(s) 248, 302
BbsI GAAGAC 3 cut(s) 130, 159, 185
BbvI GCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 300
BcnI CCSGG 1 cut(s) 283
BfaI CTAG 2 cut(s) 150, 413
BfmI CTRYAG 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 337
BfrI CTTAAG 1 cut(s) 329
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 2 cut(s) 283, 300
Bme18I GGWCC 2 cut(s) 248, 302
BmgT120I GGNCC 2 cut(s) 248, 302
BmrFI CCNGG 2 cut(s) 283, 300
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 78
BpiI GAAGAC 3 cut(s) 130, 159, 185
Bpu10I CCTNAGC 1 cut(s) 244
BpuEI CTTGAG 2 cut(s) 300, 386
BpuMI CCSGG 1 cut(s) 283
BsaAI YACGTR 1 cut(s) 476
BsaBI GATNNNNATC 2 cut(s) 268, 385
BsaJI CCNNGG 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 2 cut(s) 395, 543
Bse8I GATNNNNATC 2 cut(s) 268, 385
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 34
BseJI GATNNNNATC 2 cut(s) 268, 385
BseMI GCAATG 2 cut(s) 395, 543
BseMII CTCAG 3 cut(s) 36, 258, 297
BseNI ACTGG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 282
BsiSI CCGG 2 cut(s) 261, 282
Bsp143I GATC 1 cut(s) 275
BspACI CCGC 1 cut(s) 129
BspCNI CTCAG 3 cut(s) 35, 257, 298
BspPI GGATC 1 cut(s) 283
BspTI CTTAAG 1 cut(s) 329
BsrDI GCAATG 2 cut(s) 395, 543
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 16
BstAFI CTTAAG 1 cut(s) 329
BstBAI YACGTR 1 cut(s) 476
BstDEI CTNAG 3 cut(s) 22, 244, 306
BstF5I GGATG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 1 cut(s) 278
BstMBI GATC 1 cut(s) 275
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 2 cut(s) 224, 406
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 281, 298
BstSFI CTRYAG 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 239
BstV2I GAAGAC 3 cut(s) 130, 159, 185
BtsCI GGATG 1 cut(s) 34
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 2 cut(s) 248, 302
Csp6I GTAC 1 cut(s) 466
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviAII CATG 1 cut(s) 200
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 3 cut(s) 22, 244, 306
DpnI GATC 1 cut(s) 277
DpnII GATC 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco47I GGWCC 2 cut(s) 248, 302
Eco47III AGCGCT 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 298
FaeI CATG 1 cut(s) 203
FaiI YATR 8 cut(s) 55, 57, 96, 120, 201, 363, 473, 551
FatI CATG 1 cut(s) 199
FauI CCCGC 1 cut(s) 136
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 2 cut(s) 150, 413
GlaI GCGC 1 cut(s) 335
GluI GCNGC 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 337
HapII CCGG 2 cut(s) 261, 282
HhaI GCGC 1 cut(s) 336
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 290, 381
HpaII CCGG 2 cut(s) 261, 282
HphI GGTGA 2 cut(s) 168, 513
Hpy166II GTNNAC 2 cut(s) 77, 322
Hpy188III TCNNGA 3 cut(s) 273, 305, 458
Hpy8I GTNNAC 2 cut(s) 77, 322
HpyAV CCTTC 4 cut(s) 48, 183, 550, 556
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 2 cut(s) 377, 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 406
HpyF3I CTNAG 3 cut(s) 22, 244, 306
HpySE526I ACGT 1 cut(s) 475
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 275
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 1 cut(s) 364
MaeI CTAG 2 cut(s) 150, 413
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 2 cut(s) 86, 519
MalI GATC 1 cut(s) 277
MboI GATC 1 cut(s) 275
MluCI AATT 5 cut(s) 48, 61, 108, 294, 453
MmeI TCCRAC 1 cut(s) 475
MnlI CCTC 4 cut(s) 19, 182, 324, 505
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 2 cut(s) 111, 330
MslI CAYNNNNRTG 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 2 cut(s) 261, 282
MspR9I CCNGG 2 cut(s) 283, 300
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 224, 406
NciI CCSGG 1 cut(s) 283
NdeII GATC 1 cut(s) 275
NlaIII CATG 1 cut(s) 203
NmeAIII GCCGAG 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 519
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 290, 381
PkrI GCNGC 1 cut(s) 229
Ppu21I YACGTR 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspPI GGNCC 2 cut(s) 248, 302
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 548
SalI GTCGAC 1 cut(s) 320
SaqAI TTAA 2 cut(s) 111, 330
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 1 cut(s) 275
Sau96I GGNCC 2 cut(s) 248, 302
ScaI AGTACT 1 cut(s) 467
ScrFI CCNGG 2 cut(s) 283, 300
SetI ASST 9 cut(s) 28, 119, 167, 193, 250, 256, 429, 478, 526
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 118
SinI GGWCC 2 cut(s) 248, 302
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 3 cut(s) 315, 329, 401
SmoI CTYRAG 3 cut(s) 315, 329, 401
Sse9I AATT 5 cut(s) 48, 61, 108, 294, 453
SsiI CCGC 1 cut(s) 129
SspMI CTAG 2 cut(s) 150, 413
StyD4I CCNGG 2 cut(s) 281, 298
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 478
TaqI TCGA 3 cut(s) 278, 321, 506
TasI AATT 5 cut(s) 48, 61, 108, 294, 453
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 2 cut(s) 290, 381
Tru1I TTAA 2 cut(s) 111, 330
Tru9I TTAA 2 cut(s) 111, 330
TseFI GTSAC 1 cut(s) 519
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 519
TspDTI ATGAA 5 cut(s) 6, 83, 188, 357, 532
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 248, 302
XapI RAATTY 2 cut(s) 48, 453
XmiI GTMKAC 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 2 cut(s) 150, 413
ZrmI AGTACT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.