Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

48847502 .. 48851156

Gene Structure 3655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0313400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAATCCAATGGGAAAGATGAGGGAATGGAAGAGCAACAGAGCTTGGAAAGCAGTGAGATTGAGAAAAGCAAAGTGGGGATCATGAGAGCCCTTGTGGAAAGAGAAGATCCCTCCTCCAAGGAAGTGGATGATTTCATGATCCGGAGATTTCTTCGGGCTCGTGATCATGACATTGAGAAGGCTTCTAACCTCTTCCTCAAGTACCTGAGTTGGAGGAAAGCATTTATGCCAAATGGTTCCATCTCAGAGTCGGAGATTCCAAGAGAACTAGCTCATAACAAGTTGTTTATGCAAGGCGTGGACAAGAAGGGGCGCCCCATTGTTGTTGTCTATGGTGGGAGGCATAAGCACACCAAGCTAGAGGAGTTTAAACGTTTTGTAGTCTACACTCTTGAGAAGATATGTGCCAGAATGCCAGCGGGGCAGGAAAAGTTTTTATCCATTGCAGATCTTGAAGGATGGGGGTATGCCAACAGTGATGTTCGTGGATACTTAGCAGCTCTAACAATCTTACAGGATTGCTATCCGGAGAGGCTTGGCAAGTTATTTATTGTCCATTCACCGTACCTATTCATGACTGCTTGGAAGATGGTTTACCCTTTTATCGATGACAAAACCAAAAAAAAGATAATTTTTGTTGAGAACAAAAAGCTGAACTCCACATTACTCGGTGATATTGATGAGAGCCAACTACCGGATGTATATGGCGGCAAACTGCCATTAGTTCCGATCCAAGACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

248

Amino Acids

28.56

Weight (kDa)

6.97

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	93 - 238	4.8e-38	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	105 - 218	1e-07	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	387
AccIII	TCCGGA	2 cut(s)	144, 529
AciI	CCGC	2 cut(s)	422, 711
AclI	AACGTT	1 cut(s)	376
AclWI	GGATC	4 cut(s)	89, 104, 136, 727
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	206, 569
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	1 cut(s)	458
AluBI	AGCT	5 cut(s)	45, 275, 361, 503, 655
AluI	AGCT	5 cut(s)	45, 275, 361, 503, 655
AlwI	GGATC	4 cut(s)	89, 104, 136, 727
Aor13HI	TCCGGA	2 cut(s)	144, 529
ApeKI	GCWGC	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	555, 686
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	2 cut(s)	94, 163
BarI	GAAGNNNNNNTAC	2 cut(s)	581, 613
BauI	CACGAG	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	3 cut(s)	251, 456, 586
BciVI	GTATCC	1 cut(s)	485
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	2 cut(s)	272, 362
BfoI	RGCGCY	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	2 cut(s)	501, 712
BlsI	GCNGC	2 cut(s)	502, 713
BmiI	GGNNCC	2 cut(s)	241, 317
BpuEI	CTTGAG	2 cut(s)	185, 416
Bsa29I	ATCGAT	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	3 cut(s)	144, 529, 697
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	525
BseAI	TCCGGA	2 cut(s)	144, 529
BseCI	ATCGAT	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	3 cut(s)	136, 467, 706
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	200, 261
BseRI	GAGGAG	2 cut(s)	106, 380
BseXI	GCAGC	1 cut(s)	512
BshNI	GGYRCC	1 cut(s)	315
BshVI	ATCGAT	1 cut(s)	609
BsiSI	CCGG	3 cut(s)	145, 530, 698
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmI	GAATGC	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	94, 163
Bsp13I	TCCGGA	2 cut(s)	144, 529
Bsp143I	GATC	6 cut(s)	81, 109, 141, 166, 451, 732
BspACI	CCGC	2 cut(s)	422, 711
BspCNI	CTCAG	2 cut(s)	201, 260
BspDI	ATCGAT	1 cut(s)	609
BspEI	TCCGGA	2 cut(s)	144, 529
BspHI	TCATGA	4 cut(s)	84, 138, 169, 576
BspLI	GGNNCC	2 cut(s)	241, 317
BspPI	GGATC	4 cut(s)	89, 104, 136, 727
BspQI	GCTCTTC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	6 cut(s)	81, 109, 141, 166, 451, 732
BssNI	GRCGYC	1 cut(s)	316
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	479, 567
Bst6I	CTCTTC	2 cut(s)	27, 200
BstACI	GRCGYC	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	3 cut(s)	209, 247, 496
BstF5I	GGATG	3 cut(s)	136, 467, 706
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	6 cut(s)	84, 112, 144, 169, 454, 735
BstMBI	GATC	6 cut(s)	81, 109, 141, 166, 451, 732
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 358, 424
BstV1I	GCAGC	1 cut(s)	512
BstX2I	RGATCY	2 cut(s)	109, 451
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	2 cut(s)	109, 451
Bsu15I	ATCGAT	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	485
BsuTUI	ATCGAT	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	136, 467, 706
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	61, 484
Cac8I	GCNNGC	1 cut(s)	420
CciI	TCATGA	4 cut(s)	84, 138, 169, 576
CfoI	GCGC	1 cut(s)	318
ClaI	ATCGAT	1 cut(s)	609
Csp6I	GTAC	2 cut(s)	205, 568
CviAII	CATG	4 cut(s)	85, 139, 170, 577
CviQI	GTAC	2 cut(s)	205, 568
DdeI	CTNAG	3 cut(s)	209, 247, 496
DinI	GGCGCC	1 cut(s)	317
DpnI	GATC	6 cut(s)	83, 111, 143, 168, 453, 734
DpnII	GATC	6 cut(s)	81, 109, 141, 166, 451, 732
DraI	TTTAAA	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	27, 200
EarI	CTCTTC	2 cut(s)	27, 200
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	2 cut(s)	94, 163
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	2 cut(s)	94, 163
EgeI	GGCGCC	1 cut(s)	317
EheI	GGCGCC	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	4 cut(s)	88, 142, 173, 580
FatI	CATG	4 cut(s)	84, 138, 169, 576
FauI	CCCGC	1 cut(s)	415
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	501, 712
FokI	GGATG	3 cut(s)	143, 474, 713
FriOI	GRGCYC	2 cut(s)	94, 163
Fsp4HI	GCNGC	2 cut(s)	501, 712
FspBI	CTAG	2 cut(s)	272, 362
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	2 cut(s)	501, 712
HaeII	RGCGCY	1 cut(s)	319
HapII	CCGG	3 cut(s)	145, 530, 698
HhaI	GCGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	4 cut(s)	88, 142, 173, 580
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	3 cut(s)	5, 251, 259
HpaII	CCGG	3 cut(s)	145, 530, 698
HphI	GGTGA	2 cut(s)	555, 686
Hpy166II	GTNNAC	3 cut(s)	304, 388, 598
Hpy188I	TCNGA	3 cut(s)	250, 256, 732
Hpy188III	TCNNGA	9 cut(s)	85, 139, 145, 164, 170, 395, 455, 530, 577
Hpy8I	GTNNAC	3 cut(s)	304, 388, 598
HpyAV	CCTTC	3 cut(s)	175, 304, 452
HpyCH4III	ACNGT	2 cut(s)	479, 567
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	2 cut(s)	295, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 358, 424
HpyF3I	CTNAG	3 cut(s)	209, 247, 496
HpySE526I	ACGT	1 cut(s)	376
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	4 cut(s)	88, 142, 173, 580
HspAI	GCGC	1 cut(s)	316
KasI	GGCGCC	1 cut(s)	315
Kpn2I	TCCGGA	2 cut(s)	144, 529
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	6 cut(s)	81, 109, 141, 166, 451, 732
LguI	GCTCTTC	1 cut(s)	27
LpnPI	CCDG	8 cut(s)	158, 221, 413, 424, 432, 503, 543, 711
Lsp1109I	GCAGC	1 cut(s)	512
MaeI	CTAG	2 cut(s)	272, 362
MaeII	ACGT	1 cut(s)	376
MalI	GATC	6 cut(s)	83, 111, 143, 168, 453, 734
MboI	GATC	6 cut(s)	81, 109, 141, 166, 451, 732
MboII	GAAGA	6 cut(s)	44, 119, 146, 187, 412, 601
MflI	RGATCY	2 cut(s)	109, 451
MhlI	GDGCHC	2 cut(s)	94, 163
MluCI	AATT	1 cut(s)	633
Mly113I	GGCGCC	1 cut(s)	316
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	2 cut(s)	194, 234
MnlI	CCTC	9 cut(s)	16, 124, 127, 203, 209, 210, 336, 358, 528
MroI	TCCGGA	2 cut(s)	144, 529
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	3 cut(s)	145, 530, 698
MssI	GTTTAAAC	1 cut(s)	373
Mva1269I	GAATGC	1 cut(s)	420
MwoI	GCNNNNNNNGC	3 cut(s)	51, 358, 424
NarI	GGCGCC	1 cut(s)	316
NdeII	GATC	6 cut(s)	81, 109, 141, 166, 451, 732
NlaIII	CATG	4 cut(s)	88, 142, 173, 580
NlaIV	GGNNCC	2 cut(s)	241, 317
PagI	TCATGA	4 cut(s)	84, 138, 169, 576
PciSI	GCTCTTC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	5, 259
PkrI	GCNGC	2 cut(s)	502, 713
PleI	GAGTC	1 cut(s)	259
PluTI	GGCGCC	1 cut(s)	319
PmeI	GTTTAAAC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	259
Psp1406I	AACGTT	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	241, 317
PsuI	RGATCY	2 cut(s)	109, 451
RsaI	GTAC	2 cut(s)	206, 569
RsaNI	GTAC	2 cut(s)	205, 568
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	501, 712
Sau3AI	GATC	6 cut(s)	81, 109, 141, 166, 451, 732
SchI	GAGTC	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	94, 163
SetI	ASST	9 cut(s)	47, 195, 210, 277, 363, 379, 505, 573, 657
SfoI	GGCGCC	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	200, 395
SmoI	CTYRAG	2 cut(s)	200, 395
Sse9I	AATT	1 cut(s)	633
SsiI	CCGC	2 cut(s)	422, 711
SspDI	GGCGCC	1 cut(s)	315
SspMI	CTAG	2 cut(s)	272, 362
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	479, 567
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	1 cut(s)	609
TasI	AATT	1 cut(s)	633
TauI	GCSGC	1 cut(s)	714
TfiI	GAWTC	2 cut(s)	5, 259
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	61, 484
TseI	GCWGC	1 cut(s)	500
TspDTI	ATGAA	2 cut(s)	127, 565
TspRI	CASTG	2 cut(s)	61, 484
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	2 cut(s)	272, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.