Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

52875329 .. 52875994

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG297400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTCATCAGAATCCTGTAGCATTCTCCTCCGTCGACCCCAGGCTCATGTCGTTCTCCTCCCAAGCGCCGGCATGCGCCATCTGACACCCTTTCTACAACTTGCCGCATTGCTATCCCAAAACCACCGCTGCCAGCTGACCCACATCACCACCCAACCCACCGTCTCACTCGCCGAGTCTTCTCTCATCTCTGGCTTCCTCTTAGCTTTCCCTCACGTCACTCAAGTCCATTTCCACCTCCCCGAGTCTTCTCTAATATTTTCTTCACCTCCTCGGCCAGAATGCCCTCCCTCTTGTCATGGCAACCACAATGAATCTGGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

108

Amino Acids

11.8

Weight (kDa)

7.12

Isoelectric Point (pI)

86.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	34
AciI	CCGC	2 cut(s)	105, 127
AcoI	YGGCCR	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	2 cut(s)	136, 206
AluI	AGCT	2 cut(s)	136, 206
Alw26I	GTCTC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	129
AspLEI	GCGC	2 cut(s)	68, 78
AsuHPI	GGTGA	2 cut(s)	139, 258
AvaI	CYCGRG	1 cut(s)	242
BbsI	GAAGAC	2 cut(s)	171, 240
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	169
BfmI	CTRYAG	1 cut(s)	16
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	2 cut(s)	105, 130
BlsI	GCNGC	2 cut(s)	106, 131
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	242
BmgBI	CACGTC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	41
BpiI	GAAGAC	2 cut(s)	171, 240
BpuEI	CTTGAG	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	39, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	39, 272
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	107
BseRI	GAGGAG	3 cut(s)	17, 47, 261
BseXI	GCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	169
BsmBI	CGTCTC	1 cut(s)	169
BsmI	GAATGC	2 cut(s)	21, 287
BsnI	GGCC	1 cut(s)	277
BsoBI	CYCGRG	1 cut(s)	242
BspACI	CCGC	2 cut(s)	105, 127
BspANI	GGCC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	39, 272
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	70, 74, 134
BstDEI	CTNAG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	68, 78
BstMAI	GTCTC	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	116
BstV2I	GAAGAC	2 cut(s)	171, 240
BsuRI	GGCC	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	217
Cac8I	GCNNGC	3 cut(s)	70, 74, 134
CfoI	GCGC	2 cut(s)	68, 78
Cfr10I	RCCGGY	1 cut(s)	68
CviAII	CATG	3 cut(s)	47, 73, 299
CviJI	RGCY	5 cut(s)	44, 136, 195, 206, 277
CviKI_1	RGCY	5 cut(s)	44, 136, 195, 206, 277
DdeI	CTNAG	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	3 cut(s)	50, 76, 302
FaiI	YATR	3 cut(s)	48, 74, 300
FatI	CATG	3 cut(s)	46, 72, 298
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	105, 130
Fsp4HI	GCNGC	2 cut(s)	105, 130
GlaI	GCGC	2 cut(s)	67, 77
GluI	GCNGC	2 cut(s)	105, 130
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	2 cut(s)	68, 78
Hin1II	CATG	3 cut(s)	50, 76, 302
Hin6I	GCGC	2 cut(s)	66, 76
HinP1I	GCGC	2 cut(s)	66, 76
HincII	GTYRAC	1 cut(s)	35
HindII	GTYRAC	1 cut(s)	35
HinfI	GANTC	4 cut(s)	11, 176, 245, 314
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	2 cut(s)	139, 258
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	10, 84
Hpy8I	GTNNAC	1 cut(s)	35
Hpy99I	CGWCG	1 cut(s)	36
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	216
HpyF3I	CTNAG	1 cut(s)	202
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	50, 76, 302
HspAI	GCGC	2 cut(s)	66, 76
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
LpnPI	CCDG	8 cut(s)	26, 28, 53, 82, 146, 177, 291, 303
Lsp1109I	GCAGC	1 cut(s)	116
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	171, 240, 255
MlyI	GAGTC	2 cut(s)	185, 254
MnlI	CCTC	9 cut(s)	38, 68, 209, 222, 248, 279, 282, 297, 301
MroNI	GCCGGC	1 cut(s)	68
MspA1I	CMGCKG	2 cut(s)	129, 136
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	41
Mva1269I	GAATGC	2 cut(s)	21, 287
MvaI	CCWGG	1 cut(s)	41
NaeI	GCCGGC	1 cut(s)	70
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	3 cut(s)	50, 76, 302
NmeAIII	GCCGAG	2 cut(s)	199, 253
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	76
PaeI	GCATGC	1 cut(s)	76
PctI	GAATGC	2 cut(s)	21, 287
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	11, 314
PkrI	GCNGC	2 cut(s)	106, 131
PleI	GAGTC	2 cut(s)	184, 253
PpsI	GAGTC	2 cut(s)	184, 253
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	136
SalI	GTCGAC	1 cut(s)	33
SatI	GCNGC	2 cut(s)	105, 130
SchI	GAGTC	2 cut(s)	185, 254
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	5 cut(s)	138, 208, 219, 240, 271
SfcI	CTRYAG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
SphI	GCATGC	1 cut(s)	76
SsiI	CCGC	2 cut(s)	105, 127
SspI	AATATT	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	1 cut(s)	34
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	11, 314
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	1 cut(s)	20
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.