MD16G1276100.v1.1

Asparagine synthetase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
37214455 .. 37217885
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1276100.v1.1.491

Sequence Viewer

Length: 261 bp
ATGTACCAGCATGGAGATTCTTTCTTTGCTCATCAGAGGCTAGCCATTATTGACCCTATTTCTGGTGACCAACCTCTCTACAGTGAAGGCAAATCAATTGTTGTCATGGTGAATGGAGATATTTACAACCATAAAGAGCTGAGGAGCTGTCTGCCAAATCAGATTTATAAGGTTGAACCAAAAACTCTCCAAGATGCTAGTTCTCTAAAAGACAGTGTTGAGTGGATATTTTGGAGGAGTCGAGTGATTTACTGCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.98

Weight (kDa)

6.25

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATase_6 PF13522 5 - 62 2.8e-11 Glutamine amidotransferase domain
GATase_7 PF13537 11 - 59 8.2e-12 Glutamine amidotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 2 cut(s) 139, 147
AluI AGCT 2 cut(s) 139, 147
AsuHPI GGTGA 2 cut(s) 77, 121
AsuNHI GCTAGC 1 cut(s) 40
BbvCI CCTCAGC 1 cut(s) 140
BfaI CTAG 3 cut(s) 41, 198, 259
BfmI CTRYAG 1 cut(s) 79
BmsI GCATC 1 cut(s) 184
BmtI GCTAGC 1 cut(s) 44
Bpu10I CCTNAGC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 2 cut(s) 157, 250
BslI CCNNNNNNNGG 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 132
BspOI GCTAGC 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 83, 215
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 140
BstEII GGTNACC 1 cut(s) 65
BstPI GGTNACC 1 cut(s) 65
BstSFI CTRYAG 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 88, 220
Cac8I GCNNGC 1 cut(s) 42
CseI GACGC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 11, 106
CviJI RGCY 4 cut(s) 40, 44, 139, 147
CviKI_1 RGCY 4 cut(s) 40, 44, 139, 147
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 140
Eco91I GGTNACC 1 cut(s) 65
EcoO65I GGTNACC 1 cut(s) 65
FaeI CATG 2 cut(s) 14, 109
FaiI YATR 4 cut(s) 12, 107, 132, 168
FatI CATG 2 cut(s) 10, 105
FspBI CTAG 3 cut(s) 41, 198, 259
HgaI GACGC 1 cut(s) 244
Hin1II CATG 2 cut(s) 14, 109
HinfI GANTC 2 cut(s) 17, 238
HphI GGTGA 2 cut(s) 77, 121
Hpy188I TCNGA 2 cut(s) 36, 162
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 83, 215
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 2 cut(s) 14, 109
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 2 cut(s) 20, 48
LweI GCATC 1 cut(s) 184
MaeI CTAG 3 cut(s) 41, 198, 259
MaeIII GTNAC 1 cut(s) 65
MfeI CAATTG 1 cut(s) 96
MluCI AATT 1 cut(s) 96
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 4 cut(s) 30, 84, 135, 228
MunI CAATTG 1 cut(s) 96
NheI GCTAGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 14, 109
NmuCI GTSAC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 17
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PsiI TTATAA 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 65
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SchI GAGTC 1 cut(s) 247
SetI ASST 4 cut(s) 76, 141, 149, 174
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 79
SgeI CNNG 8 cut(s) 19, 23, 53, 75, 118, 203, 210, 254
Sse9I AATT 1 cut(s) 96
SspMI CTAG 3 cut(s) 41, 198, 259
TaaI ACNGT 2 cut(s) 83, 215
TaqI TCGA 1 cut(s) 241
TasI AATT 1 cut(s) 96
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 2 cut(s) 88, 220
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspRI CASTG 2 cut(s) 88, 220
XspI CTAG 3 cut(s) 41, 198, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.