Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Reverse (-)

6799421 .. 6800752

Gene Structure 1332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGGTCACCTCACGCCCTTCCTTCGACTCGCTGCTTTACTGACAACACACAATGTTCGGGTCACCTTCATCACTCCAATTCCAACCGTCTCATTTGCAGAGTCGCAGAGTTTATCTCAATTGTCGACCACCTTCCCTCAGATCACTCAAAAGCATCTTCATCTCCTTCCACTTGATGAGCCGTTGGCCAATTCAGAAGACCCCTTTTACTACCATTTTGAGTTGATTCGCCGCTCGTCTCACCTACTCCCTCCTCTTCTATCTTCACTCTCTCCACCTCTCTCAGCTATGATCACAGATATGAGCTTCTCCTCCACTGTTATTCCCATAACCGATTCTCTTGGACTTCCTAACTACATTTTCTTCACATCATCTGCCAAAATGTTGACACTTTATGTGTCCTTCCACACCATGCTCGGCCCAAACCGAGAAATCAAAGATGGTCTCGAAGTTTCAGGTTTAGAGCCAATACCAAAAGCATGGATTCCTCCACCACTTCTCAAGGACAGTAATAATCTCCTGAAGAGCTTTTTCACAGAGAATGGTAAGAAAATGACAGATTCGACTGGTATTCTGATCAACACATTCGAGAGTATAGAGCATGAGACAGTGGCTGCACTAAATGAGGGAAGGGTATTAAAAGGGCTACCATCGGCAATTGCCATTGGACCACTTCCACCATGTAACTCTGAGACAGACCATCAACAAGCATGGCTAGATGATCAACCAACTGGATCAGTGTTCTATATCAGCTTTGGGAGTAGGACTGCAATGTCAAGGGAGCAAATCAGAGAGTTGGGTGAGGGCTTGGTGAGGAGTGGGTGTAGGTTTCTGTGGGTCGTGAAGGATAAAAAAGTTGACATGGAAGACGATGAGAAACTGACTGAGGTGCTTGGACAGGGTTTACTGGAAAGAGTGAAGGAAAAGGGATTGGCAGTGAAGAAGTGGCTGAACCAAGAGGAGGCATTGAGGCATCCTGCAATCGCTGGCTTTTTAAGTCATTGTGGCTGGAATTCCTTGAGTGAGGCTCTGTGGAACGGTGTGCCCGTATTAGCATGGCCGCAACATGGGGACCAGAAAATCAATGCCAACTTGGTGGAGAGAATTGGGCTGGGAGTGTGGGTTAAGAGTTGGGGTTGGGGTGAGGAGGAGATGGTGGTGAAAGCAGAGGATATTGCAGCGAGGGTTAAGGAGATTATGGGAAATGACTCATTGAGATTGCAAGCACTACACATTAAAGAAGAGGCTAGACTGGCAGTAGGAGATACTGGTAGTTCTACAAAGAGACTCACTGCTCTCATTGAGACATGGAAAGAGTTTCGAGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

443

Amino Acids

49.32

Weight (kDa)

5.85

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	234 - 405	6.9e-19	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	772
AccBSI	CCGCTC	1 cut(s)	234
AccI	GTMKAC	1 cut(s)	125
AciI	CCGC	2 cut(s)	232, 1061
AclWI	GGATC	1 cut(s)	742
AcoI	YGGCCR	2 cut(s)	186, 1058
AcsI	RAATTY	1 cut(s)	1012
AcuI	CTGAAG	1 cut(s)	542
AfiI	CCNNNNNNNGG	2 cut(s)	961, 1067
AluBI	AGCT	4 cut(s)	287, 306, 528, 753
AluI	AGCT	4 cut(s)	287, 306, 528, 753
Alw26I	GTCTC	7 cut(s)	94, 243, 449, 599, 686, 1279, 1298
AlwI	GGATC	1 cut(s)	742
AlwNI	CAGNNNCTG	1 cut(s)	614
AoxI	GGCC	3 cut(s)	186, 418, 1058
ApeKI	GCWGC	3 cut(s)	32, 614, 1178
ApoI	RAATTY	1 cut(s)	1012
AspS9I	GGNCC	3 cut(s)	419, 668, 1072
AsuHPI	GGTGA	6 cut(s)	55, 233, 812, 823, 1154, 1171
AvaII	GGWCC	2 cut(s)	668, 1072
BaeGI	GKGCMC	1 cut(s)	1047
BalI	TGGCCA	1 cut(s)	188
BbsI	GAAGAC	2 cut(s)	204, 873
BbvI	GCAGC	3 cut(s)	19, 601, 1190
BccI	CCATC	4 cut(s)	434, 658, 708, 1147
BceAI	ACGGC	1 cut(s)	166
BclI	TGATCA	3 cut(s)	291, 576, 721
BcoDI	GTCTC	7 cut(s)	94, 243, 449, 599, 686, 1279, 1298
BfaI	CTAG	2 cut(s)	716, 1248
BisI	GCNGC	5 cut(s)	33, 232, 615, 1061, 1179
BlsI	GCNGC	5 cut(s)	34, 233, 616, 1062, 1180
Bme18I	GGWCC	2 cut(s)	668, 1072
BmgT120I	GGNCC	3 cut(s)	419, 668, 1072
BmiI	GGNNCC	1 cut(s)	1073
BmsI	GCATC	2 cut(s)	163, 982
BpiI	GAAGAC	2 cut(s)	204, 873
BplI	GAGNNNNNCTC	4 cut(s)	100, 132, 1012, 1044
BpuEI	CTTGAG	2 cut(s)	485, 1039
BsaI	GGTCTC	1 cut(s)	449
BsaXI	ACNNNNNCTCC	4 cut(s)	808, 838, 1107, 1137
Bsc4I	CCNNNNNNNGG	2 cut(s)	961, 1067
Bse1I	ACTGG	5 cut(s)	571, 736, 912, 1257, 1273
Bse3DI	GCAATG	1 cut(s)	777
BseGI	GGATG	1 cut(s)	973
BseLI	CCNNNNNNNGG	2 cut(s)	961, 1067
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	4 cut(s)	152, 297, 681, 876
BseNI	ACTGG	5 cut(s)	571, 736, 912, 1257, 1273
BseRI	GAGGAG	6 cut(s)	243, 301, 829, 974, 1160, 1163
BseSI	GKGCMC	1 cut(s)	1047
BseXI	GCAGC	3 cut(s)	19, 601, 1190
BseYI	CCCAGC	1 cut(s)	1111
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	188, 420, 1060
BslFI	GGGAC	1 cut(s)	1085
BslI	CCNNNNNNNGG	2 cut(s)	961, 1067
BsmAI	GTCTC	7 cut(s)	94, 243, 449, 599, 686, 1279, 1298
BsmBI	CGTCTC	2 cut(s)	94, 243
BsmFI	GGGAC	1 cut(s)	1085
BsnI	GGCC	3 cut(s)	188, 420, 1060
Bso31I	GGTCTC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	1047
Bsp143I	GATC	5 cut(s)	141, 291, 576, 721, 734
BspACI	CCGC	2 cut(s)	232, 1061
BspANI	GGCC	3 cut(s)	188, 420, 1060
BspCNI	CTCAG	4 cut(s)	151, 296, 682, 877
BspLI	GGNNCC	1 cut(s)	1073
BspPI	GGATC	1 cut(s)	742
BspQI	GCTCTTC	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	777
BsrI	ACTGG	5 cut(s)	571, 736, 912, 1257, 1273
BssMI	GATC	5 cut(s)	141, 291, 576, 721, 734
Bst4CI	ACNGT	5 cut(s)	88, 319, 509, 610, 1040
Bst6I	CTCTTC	3 cut(s)	261, 518, 1236
BstC8I	GCNNGC	2 cut(s)	988, 1224
BstDEI	CTNAG	4 cut(s)	138, 283, 690, 885
BstEII	GGTNACC	2 cut(s)	5, 61
BstF5I	GGATG	1 cut(s)	973
BstKTI	GATC	5 cut(s)	144, 294, 579, 724, 737
BstMAI	GTCTC	7 cut(s)	94, 243, 449, 599, 686, 1279, 1298
BstMBI	GATC	5 cut(s)	141, 291, 576, 721, 734
BstMWI	GCNNNNNNNGC	1 cut(s)	1253
BstPI	GGTNACC	2 cut(s)	5, 61
BstSLI	GKGCMC	1 cut(s)	1047
BstV1I	GCAGC	3 cut(s)	19, 601, 1190
BstV2I	GAAGAC	2 cut(s)	204, 873
BstXI	CCANNNNNNTGG	2 cut(s)	480, 1096
BsuRI	GGCC	3 cut(s)	188, 420, 1060
BtsCI	GGATG	1 cut(s)	973
BtsI	GCAGTG	2 cut(s)	942, 1290
BtsIMutI	CAGTG	5 cut(s)	315, 615, 744, 942, 1290
Cac8I	GCNNGC	2 cut(s)	988, 1224
CaiI	CAGNNNCTG	1 cut(s)	614
Cfr13I	GGNCC	3 cut(s)	419, 668, 1072
CviAII	CATG	9 cut(s)	412, 480, 602, 681, 711, 862, 1056, 1067, 1308
DdeI	CTNAG	4 cut(s)	138, 283, 690, 885
DpnI	GATC	5 cut(s)	143, 293, 578, 723, 736
DpnII	GATC	5 cut(s)	141, 291, 576, 721, 734
DrdI	GACNNNNNNGTC	1 cut(s)	772
DseDI	GACNNNNNNGTC	1 cut(s)	772
EaeI	YGGCCR	2 cut(s)	186, 1058
Eam1104I	CTCTTC	3 cut(s)	261, 518, 1236
EarI	CTCTTC	3 cut(s)	261, 518, 1236
Eco31I	GGTCTC	1 cut(s)	449
Eco47I	GGWCC	2 cut(s)	668, 1072
Eco57I	CTGAAG	1 cut(s)	542
Eco91I	GGTNACC	2 cut(s)	5, 61
EcoO65I	GGTNACC	2 cut(s)	5, 61
EcoRI	GAATTC	1 cut(s)	1012
Esp3I	CGTCTC	2 cut(s)	94, 243
FaeI	CATG	9 cut(s)	415, 483, 605, 684, 714, 865, 1059, 1070, 1311
FaqI	GGGAC	1 cut(s)	1085
FatI	CATG	9 cut(s)	411, 479, 601, 680, 710, 861, 1055, 1066, 1307
FbaI	TGATCA	3 cut(s)	291, 576, 721
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	5 cut(s)	33, 232, 615, 1061, 1179
FokI	GGATG	1 cut(s)	960
Fsp4HI	GCNGC	5 cut(s)	33, 232, 615, 1061, 1179
FspBI	CTAG	2 cut(s)	716, 1248
GluI	GCNGC	5 cut(s)	33, 232, 615, 1061, 1179
GsaI	CCCAGC	1 cut(s)	1115
HaeIII	GGCC	3 cut(s)	188, 420, 1060
Hin1II	CATG	9 cut(s)	415, 483, 605, 684, 714, 865, 1059, 1070, 1311
HincII	GTYRAC	3 cut(s)	126, 387, 859
HindII	GTYRAC	3 cut(s)	126, 387, 859
HinfI	GANTC	8 cut(s)	27, 101, 226, 335, 484, 560, 1208, 1287
HphI	GGTGA	6 cut(s)	55, 233, 812, 823, 1154, 1171
Hpy166II	GTNNAC	4 cut(s)	126, 387, 859, 905
Hpy188I	TCNGA	5 cut(s)	141, 196, 576, 691, 791
Hpy188III	TCNNGA	4 cut(s)	446, 520, 589, 841
Hpy8I	GTNNAC	4 cut(s)	126, 387, 859, 905
HpyAV	CCTTC	9 cut(s)	28, 32, 76, 142, 176, 412, 624, 838, 913
HpyCH4III	ACNGT	5 cut(s)	88, 319, 509, 610, 1040
HpyCH4V	TGCA	6 cut(s)	98, 617, 770, 980, 1178, 1222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1253
HpyF3I	CTNAG	4 cut(s)	138, 283, 690, 885
Hsp92II	CATG	9 cut(s)	415, 483, 605, 684, 714, 865, 1059, 1070, 1311
Ksp22I	TGATCA	3 cut(s)	291, 576, 721
Kzo9I	GATC	5 cut(s)	141, 291, 576, 721, 734
LguI	GCTCTTC	1 cut(s)	518
LmnI	GCTCC	1 cut(s)	781
Lsp1109I	GCAGC	3 cut(s)	19, 601, 1190
LweI	GCATC	2 cut(s)	163, 982
MaeI	CTAG	2 cut(s)	716, 1248
MaeIII	GTNAC	3 cut(s)	5, 61, 683
MalI	GATC	5 cut(s)	143, 293, 578, 723, 736
MbiI	CCGCTC	1 cut(s)	234
MboI	GATC	5 cut(s)	141, 291, 576, 721, 734
MboII	GAAGA	9 cut(s)	149, 209, 248, 255, 355, 535, 878, 952, 1253
MfeI	CAATTG	2 cut(s)	119, 657
MhlI	GDGCHC	1 cut(s)	1047
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	6 cut(s)	78, 119, 190, 657, 1012, 1104
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	4 cut(s)	21, 110, 1202, 1281
MmeI	TCCRAC	1 cut(s)	107
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	6 cut(s)	638, 995, 1125, 1188, 1236, 1330
MslI	CAYNNNNRTG	1 cut(s)	299
Msp20I	TGGCCA	1 cut(s)	188
MunI	CAATTG	2 cut(s)	119, 657
MwoI	GCNNNNNNNGC	1 cut(s)	1253
NdeII	GATC	5 cut(s)	141, 291, 576, 721, 734
NlaIII	CATG	9 cut(s)	415, 483, 605, 684, 714, 865, 1059, 1070, 1311
NlaIV	GGNNCC	1 cut(s)	1073
NmeAIII	GCCGAG	1 cut(s)	396
NmuCI	GTSAC	2 cut(s)	5, 61
PciSI	GCTCTTC	1 cut(s)	518
PcsI	WCGNNNNNNNCGW	1 cut(s)	1044
PfeI	GAWTC	4 cut(s)	226, 335, 484, 560
PkrI	GCNGC	5 cut(s)	34, 233, 616, 1062, 1180
PleI	GAGTC	4 cut(s)	21, 109, 1202, 1281
PpsI	GAGTC	4 cut(s)	21, 109, 1202, 1281
PspEI	GGTNACC	2 cut(s)	5, 61
PspFI	CCCAGC	1 cut(s)	1111
PspN4I	GGNNCC	1 cut(s)	1073
PspPI	GGNCC	3 cut(s)	419, 668, 1072
PstNI	CAGNNNCTG	1 cut(s)	614
RseI	CAYNNNNRTG	1 cut(s)	299
SalI	GTCGAC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	518
SaqAI	TTAA	6 cut(s)	638, 995, 1125, 1188, 1236, 1330
SatI	GCNGC	5 cut(s)	33, 232, 615, 1061, 1179
Sau3AI	GATC	5 cut(s)	141, 291, 576, 721, 734
Sau96I	GGNCC	3 cut(s)	419, 668, 1072
SchI	GAGTC	4 cut(s)	21, 110, 1202, 1281
SduI	GDGCHC	1 cut(s)	1047
SfaNI	GCATC	2 cut(s)	163, 982
SinI	GGWCC	2 cut(s)	668, 1072
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	2 cut(s)	500, 1018
SmoI	CTYRAG	2 cut(s)	500, 1018
Sse9I	AATT	6 cut(s)	78, 119, 190, 657, 1012, 1104
SsiI	CCGC	2 cut(s)	232, 1061
SspMI	CTAG	2 cut(s)	716, 1248
TaaI	ACNGT	5 cut(s)	88, 319, 509, 610, 1040
TaqI	TCGA	6 cut(s)	25, 125, 447, 563, 588, 1321
TasI	AATT	6 cut(s)	78, 119, 190, 657, 1012, 1104
TauI	GCSGC	2 cut(s)	234, 1063
TfiI	GAWTC	4 cut(s)	226, 335, 484, 560
Tru1I	TTAA	6 cut(s)	638, 995, 1125, 1188, 1236, 1330
Tru9I	TTAA	6 cut(s)	638, 995, 1125, 1188, 1236, 1330
TscAI	CASTG	5 cut(s)	322, 615, 744, 942, 1297
TseFI	GTSAC	2 cut(s)	5, 61
TseI	GCWGC	3 cut(s)	32, 614, 1178
Tsp45I	GTSAC	2 cut(s)	5, 61
TspDTI	ATGAA	2 cut(s)	58, 149
TspRI	CASTG	5 cut(s)	322, 615, 744, 942, 1297
VpaK11BI	GGWCC	2 cut(s)	668, 1072
XapI	RAATTY	1 cut(s)	1012
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	2 cut(s)	716, 1248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.