RchiOBHm_Chr4g0438841

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
61401911 .. 61402580
670 bp
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UTR
Exon/CDS
Intron
PRQ40693

Sequence Viewer

Length: 510 bp
ATGAGCATATCTTCAGTCCCTCCGCTACTTCTGACTCCCAATAGTCTCTTCGCTAATATATTCATGCAGGATGGTCCAAAACTCCCTAGATTTAATGGGATTTTGATCAATACTTTCGACGGGATAGAAACAGAGGCGGTGGAGTTGCTGAATGGAGGAAAAGTAATCGAAGCGTTGCCTCCACTATTTACTGTTGGACCTTTAGTGCCCTGTGAGTTTGAGAAGGTTGATGATGATCAATTGGGAAATGCACAACTATTGAAGTGGCTTGATGATCAGGCTGAAGGGTCAGTGGTGTATGTGAGCTTTGGAAGCAGAACAGCTCTCTCAAGAGATCAGATCAAAGAGCTTGGTGATGGGTTGGTGAGATGTGGGTTTCGGTTTCTGTGGGTGGTGAAGGAGAAGCTAGTAGACAGAGAGGAAGAAGAGGGTAGTTTGGAGATTATGGAGAAAATGGAGGGCTGGACCAAGGAGACATCTTGGGTCACAAGGCAGTGGGAGGGTTTTTGA

Protein Analysis

169

Amino Acids

19.0

Weight (kDa)

4.45

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 411
AciI CCGC 2 cut(s) 23, 137
AcuI CTGAAG 1 cut(s) 303
AgsI TTSAA 1 cut(s) 262
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 4 cut(s) 306, 323, 349, 406
AluI AGCT 4 cut(s) 306, 323, 349, 406
Alw26I GTCTC 2 cut(s) 50, 467
AspS9I GGNCC 3 cut(s) 74, 197, 465
AsuHPI GGTGA 3 cut(s) 365, 376, 406
AvaII GGWCC 3 cut(s) 74, 197, 465
BaeGI GKGCMC 1 cut(s) 210
BccI CCATC 2 cut(s) 65, 350
BclI TGATCA 3 cut(s) 105, 235, 274
BcoDI GTCTC 2 cut(s) 50, 467
BfaI CTAG 2 cut(s) 87, 407
Bme18I GGWCC 3 cut(s) 74, 197, 465
BmgT120I GGNCC 3 cut(s) 74, 197, 465
BpuEI CTTGAG 1 cut(s) 313
BsaBI GATNNNNATC 2 cut(s) 104, 234
BsaJI CCNNGG 1 cut(s) 468
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse8I GATNNNNATC 2 cut(s) 104, 234
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 1 cut(s) 76
BseJI GATNNNNATC 2 cut(s) 104, 234
BseSI GKGCMC 1 cut(s) 210
BslFI GGGAC 1 cut(s) 2
BsmAI GTCTC 2 cut(s) 50, 467
BsmFI GGGAC 1 cut(s) 2
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 5 cut(s) 105, 235, 274, 334, 339
BspACI CCGC 2 cut(s) 23, 137
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 5 cut(s) 105, 235, 274, 334, 339
BssT1I CCWWGG 1 cut(s) 468
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 2 cut(s) 53, 420
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 5 cut(s) 108, 238, 277, 337, 342
BstMAI GTCTC 2 cut(s) 50, 467
BstMBI GATC 5 cut(s) 105, 235, 274, 334, 339
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstSLI GKGCMC 1 cut(s) 210
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 2 cut(s) 297, 500
Cfr13I GGNCC 3 cut(s) 74, 197, 465
CviAII CATG 1 cut(s) 64
CviJI RGCY 7 cut(s) 268, 281, 306, 323, 349, 406, 462
CviKI_1 RGCY 7 cut(s) 268, 281, 306, 323, 349, 406, 462
DpnI GATC 5 cut(s) 107, 237, 276, 336, 341
DpnII GATC 5 cut(s) 105, 235, 274, 334, 339
Eam1104I CTCTTC 2 cut(s) 53, 420
EarI CTCTTC 2 cut(s) 53, 420
Eco130I CCWWGG 1 cut(s) 468
Eco47I GGWCC 3 cut(s) 74, 197, 465
Eco57I CTGAAG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 1 cut(s) 67
FaiI YATR 5 cut(s) 8, 59, 65, 300, 446
FaqI GGGAC 1 cut(s) 2
FatI CATG 1 cut(s) 63
FbaI TGATCA 3 cut(s) 105, 235, 274
FblI GTMKAC 1 cut(s) 411
FokI GGATG 1 cut(s) 83
FspBI CTAG 2 cut(s) 87, 407
Hin1II CATG 1 cut(s) 67
HinfI GANTC 1 cut(s) 34
HphI GGTGA 3 cut(s) 365, 376, 406
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 2 cut(s) 33, 339
Hpy188III TCNNGA 1 cut(s) 330
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 3 cut(s) 217, 278, 391
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 67, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
Hsp92II CATG 1 cut(s) 67
Ksp22I TGATCA 3 cut(s) 105, 235, 274
Kzo9I GATC 5 cut(s) 105, 235, 274, 334, 339
LpnPI CCDG 4 cut(s) 53, 223, 263, 448
MaeI CTAG 2 cut(s) 87, 407
MaeIII GTNAC 1 cut(s) 484
MalI GATC 5 cut(s) 107, 237, 276, 336, 341
MboI GATC 5 cut(s) 105, 235, 274, 334, 339
MboII GAAGA 4 cut(s) 3, 40, 434, 437
MfeI CAATTG 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 239
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 8 cut(s) 30, 127, 149, 189, 412, 421, 451, 493
MseI TTAA 1 cut(s) 93
MunI CAATTG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 312
NdeII GATC 5 cut(s) 105, 235, 274, 334, 339
NlaIII CATG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 484
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PspPI GGNCC 3 cut(s) 74, 197, 465
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 5 cut(s) 105, 235, 274, 334, 339
Sau96I GGNCC 3 cut(s) 74, 197, 465
SchI GAGTC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 210
SetI ASST 6 cut(s) 202, 228, 308, 325, 351, 408
SinI GGWCC 3 cut(s) 74, 197, 465
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 1 cut(s) 239
SsiI CCGC 2 cut(s) 23, 137
SspMI CTAG 2 cut(s) 87, 407
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 2 cut(s) 117, 168
TasI AATT 1 cut(s) 239
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 2 cut(s) 297, 500
TseFI GTSAC 1 cut(s) 484
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 2 cut(s) 297, 500
VpaK11BI GGWCC 3 cut(s) 74, 197, 465
XmiI GTMKAC 1 cut(s) 411
XspI CTAG 2 cut(s) 87, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.