Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

76781609 .. 76782997

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGTCAGATTCCGGTGATCAAAGTTTTGTTCATGTCGCTCTCCTTCCCAGCGCCGGCATGGGTCACCTCACACCCTTCCTTCGACTCGCTGCTTTACTCACAGCACACAATGTTCGGGTCACCTTCATCACTCCAATTCCAACCGTCTCACTTGCAGAGTCGCAGAGTTTATCTCAATTGTCCACCACCTTCCCTCAGATCACTCAAAAGCATCTTCATCTCCTTCCACTTGATGAGCCGTCGGCCAATTCAGAAGACCCCTTTTACTACCATTTTGAGTTGATTCGCCGCTCCTCTCACCTACTCCCTCCTCTTCTATCTTCACTCTCTCCACCTCTCTCAGCTATGATCACAGATATGAGCTTCTCCTCCACTGTTATTCCCATTACCGATTCTCTTGGACTTCCTAACTACATTTTCTTCACATCATCTGCCAAAATGTTGACACTTTATGTGTCCTTCCACACCATGCTCGGCCCACACCGAGAAATCAAAGATGGTCTCGAAGTTTCAGGTTTAGAGCCAATACCAAAAGCATGGATTCCTCCACCACTTCTCAAGGACGGCAACAATCTCCTGAAGAGCTTTTTCACAGAGAATGGCAAGAAAATGACGGAGTCGACTGGAATTCTGATCAACACATTCGAGAGTATAGAACATGAGACAGTGGCTGCACTAAATGAGGGCAGGGTATTAAAAGGGCTACCATCGGCAATTGCCATTGGACCACTTCCACCATGTAACTCTGAGACAGACCATCAACTAGCATGGCTAGATGATCAACCAACTGGATCAGTGTTCTATGTCAGCTTTGGGAGTAGGACTGCAATGTCAAGGGAGCAAATCAGAGAGTTGGGTGAGGGCTTGGTGAGGAGTGGGTGTAGGTTTCTGTGGGTCGTGAAGGATAAAAAAGTTGACATGGAAGACGATGAGAAACTGACTGAGGTGCTTGGACAGGGTTTACTGGAAAGAGTGAAGGAAAAGGGATTGGCAGTGAAGAAGTGGCTCAACCAAGAGGAGGTATTGAGGCATCCTGCAATCGCTGGCTTTTTAAGTCATTGTGGCTGGAATTCCTTGAGTGAGGCTCTGTGGAACGGTGTGGCAGTATTAGCATGGCCGCAACATGGGGACCAGAAAATCAATGCCGACTTGGTGGAGAGAATTGGGCTGGGAGTGTGGGTTAAGAGTTGGGGTTGGGGTGAGGAGGAGATGGTGGTGAAAGCAGAGGATATTGCAGCGAGGGTTAAGGAGATTATGGGAAATGACTCATTGAGATTGCAAGCACTACACATTAAGGAAGAGGCTAGATTGGCAGTAGGAGATACTGGTAGTTCTACAAAGAGACTCACTGCTCTCATTGAGACATGGAAAGAGTTTCGGGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

462

Amino Acids

51.12

Weight (kDa)

5.71

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	255 - 424	6.6e-18	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	829
AccBSI	CCGCTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	620
AciI	CCGC	2 cut(s)	289, 1118
AclWI	GGATC	1 cut(s)	799
AcoI	YGGCCR	2 cut(s)	243, 1115
AcsI	RAATTY	2 cut(s)	627, 1069
AcuI	CTGAAG	1 cut(s)	599
AfiI	CCNNNNNNNGG	3 cut(s)	53, 1018, 1124
AluBI	AGCT	4 cut(s)	344, 363, 585, 810
AluI	AGCT	4 cut(s)	344, 363, 585, 810
Alw26I	GTCTC	6 cut(s)	151, 506, 656, 743, 1336, 1355
AlwI	GGATC	1 cut(s)	799
AlwNI	CAGNNNCTG	1 cut(s)	671
AoxI	GGCC	3 cut(s)	243, 475, 1115
ApeKI	GCWGC	3 cut(s)	89, 671, 1235
ApoI	RAATTY	2 cut(s)	627, 1069
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	476, 725, 1129
AsuHPI	GGTGA	8 cut(s)	26, 56, 112, 290, 869, 880, 1211, 1228
AvaII	GGWCC	2 cut(s)	725, 1129
BbsI	GAAGAC	2 cut(s)	261, 930
BbvI	GCAGC	3 cut(s)	76, 658, 1247
BccI	CCATC	4 cut(s)	491, 715, 765, 1204
BceAI	ACGGC	2 cut(s)	223, 580
BclI	TGATCA	4 cut(s)	16, 348, 633, 778
BcoDI	GTCTC	6 cut(s)	151, 506, 656, 743, 1336, 1355
BfaI	CTAG	3 cut(s)	764, 773, 1305
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1236
BlsI	GCNGC	5 cut(s)	91, 290, 673, 1119, 1237
Bme18I	GGWCC	2 cut(s)	725, 1129
BmgT120I	GGNCC	3 cut(s)	476, 725, 1129
BmiI	GGNNCC	1 cut(s)	1130
BmsI	GCATC	2 cut(s)	220, 1039
BpiI	GAAGAC	2 cut(s)	261, 930
BplI	GAGNNNNNCTC	4 cut(s)	157, 189, 1069, 1101
BpuEI	CTTGAG	2 cut(s)	542, 1096
BsaI	GGTCTC	1 cut(s)	506
BsaWI	WCCGGW	1 cut(s)	11
BsaXI	ACNNNNNCTCC	4 cut(s)	865, 895, 1164, 1194
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 1018, 1124
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	4 cut(s)	628, 793, 969, 1330
Bse3DI	GCAATG	1 cut(s)	834
BseGI	GGATG	1 cut(s)	1030
BseLI	CCNNNNNNNGG	3 cut(s)	53, 1018, 1124
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	4 cut(s)	209, 354, 738, 933
BseNI	ACTGG	4 cut(s)	628, 793, 969, 1330
BseRI	GAGGAG	7 cut(s)	283, 300, 358, 886, 1031, 1217, 1220
BseXI	GCAGC	3 cut(s)	76, 658, 1247
BseYI	CCCAGC	2 cut(s)	47, 1168
BsgI	GTGCAG	1 cut(s)	657
BshFI	GGCC	3 cut(s)	245, 477, 1117
BsiSI	CCGG	2 cut(s)	12, 54
BslFI	GGGAC	1 cut(s)	1142
BslI	CCNNNNNNNGG	3 cut(s)	53, 1018, 1124
BsmAI	GTCTC	6 cut(s)	151, 506, 656, 743, 1336, 1355
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	1142
BsnI	GGCC	3 cut(s)	245, 477, 1117
Bso31I	GGTCTC	1 cut(s)	506
Bsp143I	GATC	6 cut(s)	16, 198, 348, 633, 778, 791
BspACI	CCGC	2 cut(s)	289, 1118
BspANI	GGCC	3 cut(s)	245, 477, 1117
BspCNI	CTCAG	4 cut(s)	208, 353, 739, 934
BspLI	GGNNCC	1 cut(s)	1130
BspPI	GGATC	1 cut(s)	799
BspQI	GCTCTTC	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	834
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	4 cut(s)	628, 793, 969, 1330
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	6 cut(s)	16, 198, 348, 633, 778, 791
Bst4CI	ACNGT	4 cut(s)	145, 376, 667, 1097
Bst6I	CTCTTC	3 cut(s)	318, 575, 1293
BstC8I	GCNNGC	3 cut(s)	55, 1045, 1281
BstDEI	CTNAG	4 cut(s)	195, 340, 747, 942
BstEII	GGTNACC	2 cut(s)	62, 118
BstF5I	GGATG	1 cut(s)	1030
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	6 cut(s)	19, 201, 351, 636, 781, 794
BstMAI	GTCTC	6 cut(s)	151, 506, 656, 743, 1336, 1355
BstMBI	GATC	6 cut(s)	16, 198, 348, 633, 778, 791
BstMWI	GCNNNNNNNGC	2 cut(s)	1109, 1310
BstPI	GGTNACC	2 cut(s)	62, 118
BstV1I	GCAGC	3 cut(s)	76, 658, 1247
BstV2I	GAAGAC	2 cut(s)	261, 930
BstXI	CCANNNNNNTGG	1 cut(s)	537
BsuRI	GGCC	3 cut(s)	245, 477, 1117
BtsCI	GGATG	1 cut(s)	1030
BtsI	GCAGTG	2 cut(s)	999, 1347
BtsIMutI	CAGTG	5 cut(s)	372, 672, 801, 999, 1347
Cac8I	GCNNGC	3 cut(s)	55, 1045, 1281
CaiI	CAGNNNCTG	1 cut(s)	671
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	476, 725, 1129
DdeI	CTNAG	4 cut(s)	195, 340, 747, 942
DpnI	GATC	6 cut(s)	18, 200, 350, 635, 780, 793
DpnII	GATC	6 cut(s)	16, 198, 348, 633, 778, 791
DrdI	GACNNNNNNGTC	1 cut(s)	829
DseDI	GACNNNNNNGTC	1 cut(s)	829
EaeI	YGGCCR	2 cut(s)	243, 1115
Eam1104I	CTCTTC	3 cut(s)	318, 575, 1293
EarI	CTCTTC	3 cut(s)	318, 575, 1293
Eco31I	GGTCTC	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	725, 1129
Eco57I	CTGAAG	1 cut(s)	599
Eco91I	GGTNACC	2 cut(s)	62, 118
EcoO65I	GGTNACC	2 cut(s)	62, 118
EcoRI	GAATTC	2 cut(s)	627, 1069
Esp3I	CGTCTC	1 cut(s)	151
FaqI	GGGAC	1 cut(s)	1142
FbaI	TGATCA	4 cut(s)	16, 348, 633, 778
FblI	GTMKAC	1 cut(s)	620
Fnu4HI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1236
FokI	GGATG	1 cut(s)	1017
Fsp4HI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1236
FspBI	CTAG	3 cut(s)	764, 773, 1305
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1236
GsaI	CCCAGC	2 cut(s)	51, 1172
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	245, 477, 1117
HapII	CCGG	2 cut(s)	12, 54
HhaI	GCGC	1 cut(s)	53
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	3 cut(s)	444, 621, 916
HindII	GTYRAC	3 cut(s)	444, 621, 916
HinfI	GANTC	9 cut(s)	8, 84, 158, 283, 392, 541, 617, 1265, 1344
HpaII	CCGG	2 cut(s)	12, 54
HphI	GGTGA	8 cut(s)	26, 56, 112, 290, 869, 880, 1211, 1228
Hpy166II	GTNNAC	5 cut(s)	183, 444, 621, 916, 962
Hpy188I	TCNGA	6 cut(s)	7, 198, 253, 633, 748, 848
Hpy188III	TCNNGA	4 cut(s)	503, 577, 646, 898
Hpy8I	GTNNAC	5 cut(s)	183, 444, 621, 916, 962
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	9 cut(s)	53, 85, 89, 133, 199, 233, 469, 895, 970
HpyCH4III	ACNGT	4 cut(s)	145, 376, 667, 1097
HpyCH4V	TGCA	6 cut(s)	155, 674, 827, 1037, 1235, 1279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1109, 1310
HpyF3I	CTNAG	4 cut(s)	195, 340, 747, 942
HspAI	GCGC	1 cut(s)	51
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Ksp22I	TGATCA	4 cut(s)	16, 348, 633, 778
Kzo9I	GATC	6 cut(s)	16, 198, 348, 633, 778, 791
LguI	GCTCTTC	1 cut(s)	575
LmnI	GCTCC	2 cut(s)	296, 838
Lsp1109I	GCAGC	3 cut(s)	76, 658, 1247
LweI	GCATC	2 cut(s)	220, 1039
MaeI	CTAG	3 cut(s)	764, 773, 1305
MaeIII	GTNAC	3 cut(s)	62, 118, 740
MalI	GATC	6 cut(s)	18, 200, 350, 635, 780, 793
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	6 cut(s)	16, 198, 348, 633, 778, 791
MboII	GAAGA	9 cut(s)	206, 266, 305, 312, 412, 592, 935, 1009, 1310
MfeI	CAATTG	2 cut(s)	176, 714
MluCI	AATT	7 cut(s)	135, 176, 247, 627, 714, 1069, 1161
MlyI	GAGTC	5 cut(s)	78, 167, 626, 1259, 1338
MmeI	TCCRAC	1 cut(s)	164
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	6 cut(s)	695, 1052, 1182, 1245, 1293, 1387
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	2 cut(s)	12, 54
MunI	CAATTG	2 cut(s)	176, 714
MwoI	GCNNNNNNNGC	2 cut(s)	1109, 1310
NaeI	GCCGGC	1 cut(s)	55
NdeII	GATC	6 cut(s)	16, 198, 348, 633, 778, 791
NgoMIV	GCCGGC	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	1130
NmeAIII	GCCGAG	1 cut(s)	453
NmuCI	GTSAC	2 cut(s)	62, 118
PciSI	GCTCTTC	1 cut(s)	575
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	4 cut(s)	8, 283, 392, 541
PflFI	GACNNNGTC	1 cut(s)	616
PkrI	GCNGC	5 cut(s)	91, 290, 673, 1119, 1237
PleI	GAGTC	5 cut(s)	78, 166, 625, 1259, 1338
PpsI	GAGTC	5 cut(s)	78, 166, 625, 1259, 1338
PspEI	GGTNACC	2 cut(s)	62, 118
PspFI	CCCAGC	2 cut(s)	47, 1168
PspN4I	GGNNCC	1 cut(s)	1130
PspPI	GGNCC	3 cut(s)	476, 725, 1129
PstNI	CAGNNNCTG	1 cut(s)	671
PsyI	GACNNNGTC	1 cut(s)	616
RseI	CAYNNNNRTG	1 cut(s)	356
SalI	GTCGAC	1 cut(s)	619
SapI	GCTCTTC	1 cut(s)	575
SaqAI	TTAA	6 cut(s)	695, 1052, 1182, 1245, 1293, 1387
SatI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1236
Sau3AI	GATC	6 cut(s)	16, 198, 348, 633, 778, 791
Sau96I	GGNCC	3 cut(s)	476, 725, 1129
SchI	GAGTC	5 cut(s)	78, 167, 626, 1259, 1338
SfaNI	GCATC	2 cut(s)	220, 1039
SinI	GGWCC	2 cut(s)	725, 1129
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	2 cut(s)	557, 1075
SmoI	CTYRAG	2 cut(s)	557, 1075
Sse9I	AATT	7 cut(s)	135, 176, 247, 627, 714, 1069, 1161
SsiI	CCGC	2 cut(s)	289, 1118
SspMI	CTAG	3 cut(s)	764, 773, 1305
TaaI	ACNGT	4 cut(s)	145, 376, 667, 1097
TaqI	TCGA	4 cut(s)	82, 504, 620, 645
TasI	AATT	7 cut(s)	135, 176, 247, 627, 714, 1069, 1161
TauI	GCSGC	2 cut(s)	291, 1120
TfiI	GAWTC	4 cut(s)	8, 283, 392, 541
Tru1I	TTAA	6 cut(s)	695, 1052, 1182, 1245, 1293, 1387
Tru9I	TTAA	6 cut(s)	695, 1052, 1182, 1245, 1293, 1387
TscAI	CASTG	5 cut(s)	379, 672, 801, 999, 1354
TseFI	GTSAC	2 cut(s)	62, 118
TseI	GCWGC	3 cut(s)	89, 671, 1235
Tsp45I	GTSAC	2 cut(s)	62, 118
TspDTI	ATGAA	3 cut(s)	20, 115, 206
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	5 cut(s)	379, 672, 801, 999, 1354
Tth111I	GACNNNGTC	1 cut(s)	616
VpaK11BI	GGWCC	2 cut(s)	725, 1129
XapI	RAATTY	2 cut(s)	627, 1069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	620
XspI	CTAG	3 cut(s)	764, 773, 1305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.