Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Reverse (-)

6267059 .. 6268024

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006326

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCTCTCCCTGTTTACTTACTACCCCATTGTGGCAACCGAATTGAATCTGGGATTTGGTGATGATGCTGTTGAAATTCCTAGCATTAATCCTGCAGTACCCATATCTTCAGTCCCTCCGTTACTTATGAATCCCAGTAGCCTCTTCGCTAATATATTCATCCAGGACGGTCCAAAACTCCCGAGATTTAATGGGATTTTGATAAATACTTTCGACGGGATAGAAACAGAGGCGGTGGAGGTGCTGAATGGCGGGAAAGTAATCGAAGCGTTGCCTCCATTATTTGCTGTTGGGCCTTTAGTGCCATGTGAGTTTGAGAGGGTTGATGATGATCAATTGGGAAATGCACAACTATTGAAGTGGCTTGATGATCAGGCTGAAGGGTCAGTGGTGTATGTGAGCTTTGGAAGCAGAACAGCTCTGTCGAGAGACCAGATCAAAGAGCTTGGTGATGGGTTGGTGAAATGTGGGTTTAGGTTTCTGTGGGTGGTGAAGGAGAAGCTAGTAGACACAGAGGAAGAAGAGGGTAGTTTGGAGATTATGGAGAAAATGAAGGGCAAAGGGTTGGTGGTGAAGCATTGGGTGGACCAAGGAGACAACTTGGGTCACAAGGCAGTGGGAGGGTTTTTGAGTCACTGTGGTTGGAATTCAGTGGTGGAAGCTGCCTGGTATGGTGTAAGAATCCTAGCGTGGCCACATCATGGGGATCAGAAGCTCAATGCAGAGGTGGTTGTGACAAGTGGGCTTGGGATATGGGCCAAAACTTGGGCCTGGGCCGGCGATGACCCGGTGTTGGCGGTGAAGGGGGAAGACATTGCTGTGAAGATCAAAGAGCTGATGCAGAGTGAAGAGCTGAGAGTGAAGGCTTTGAAGATTGGAGAAGAGGCTAAAAGGGTTGCTGGGTGCCGTGACAAAAATTTCAAAGGACTGATTGAGGAGTGGAGTAGGAATAAAATGGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

322

Amino Acids

35.36

Weight (kDa)

4.91

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	125 - 262	4.9e-16	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	903
AccB7I	CCANNNNNTGG	2 cut(s)	701, 765
AccI	GTMKAC	1 cut(s)	507
AciI	CCGC	3 cut(s)	233, 252, 797
AclWI	GGATC	1 cut(s)	714
AcoI	YGGCCR	1 cut(s)	692
AcsI	RAATTY	3 cut(s)	75, 646, 916
AcuI	CTGAAG	2 cut(s)	93, 399
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	4 cut(s)	31, 701, 765, 793
AgsI	TTSAA	5 cut(s)	46, 74, 358, 871, 922
AjnI	CCWGG	3 cut(s)	162, 665, 770
AluBI	AGCT	8 cut(s)	402, 419, 445, 502, 662, 715, 835, 853
AluI	AGCT	8 cut(s)	402, 419, 445, 502, 662, 715, 835, 853
Alw26I	GTCTC	2 cut(s)	423, 588
AlwI	GGATC	1 cut(s)	714
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	5 cut(s)	293, 692, 756, 768, 774
ApeKI	GCWGC	1 cut(s)	662
ApoI	RAATTY	3 cut(s)	75, 646, 916
AseI	ATTAAT	1 cut(s)	87
AspS9I	GGNCC	6 cut(s)	170, 293, 586, 756, 768, 774
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	6 cut(s)	71, 461, 472, 502, 583, 811
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	2 cut(s)	170, 586
BalI	TGGCCA	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	903
BbsI	GAAGAC	1 cut(s)	816
BbvI	GCAGC	1 cut(s)	649
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	1 cut(s)	891
BciT130I	CCWGG	3 cut(s)	164, 667, 772
BciVI	GTATCC	1 cut(s)	952
BclI	TGATCA	2 cut(s)	331, 370
BcnI	CCSGG	1 cut(s)	788
BcoDI	GTCTC	2 cut(s)	423, 588
BfaI	CTAG	3 cut(s)	81, 503, 686
BfmI	CTRYAG	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	952
BisI	GCNGC	1 cut(s)	663
BlsI	GCNGC	1 cut(s)	664
Bme1390I	CCNGG	4 cut(s)	164, 667, 772, 788
Bme18I	GGWCC	2 cut(s)	170, 586
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	6 cut(s)	170, 293, 586, 756, 768, 774
BmiI	GGNNCC	1 cut(s)	905
BmrFI	CCNGG	4 cut(s)	164, 667, 772, 788
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	55, 828
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	816
BpuMI	CCSGG	1 cut(s)	788
BsaBI	GATNNNNATC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	589, 771
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 701, 765, 793
Bse118I	RCCGGY	1 cut(s)	776
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	813
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	3 cut(s)	164, 667, 772
BseDI	CCNNGG	2 cut(s)	589, 771
BseGI	GGATG	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	4 cut(s)	31, 701, 765, 793
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	1 cut(s)	845
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	950
BseXI	GCAGC	1 cut(s)	649
BseYI	CCCAGC	1 cut(s)	899
BshFI	GGCC	5 cut(s)	295, 694, 758, 770, 776
BshNI	GGYRCC	1 cut(s)	903
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	777, 788
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	4 cut(s)	31, 701, 765, 793
BsmAI	GTCTC	2 cut(s)	423, 588
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	5 cut(s)	295, 694, 758, 770, 776
Bso31I	GGTCTC	1 cut(s)	423
BsoBI	CYCGRG	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	331, 370, 435, 706, 825
BspACI	CCGC	3 cut(s)	233, 252, 797
BspANI	GGCC	5 cut(s)	295, 694, 758, 770, 776
BspCNI	CTCAG	1 cut(s)	846
BspLI	GGNNCC	1 cut(s)	905
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	714
BspQI	GCTCTTC	1 cut(s)	843
BspT107I	GGYRCC	1 cut(s)	903
BspTNI	GGTCTC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	813
BsrFI	RCCGGY	1 cut(s)	776
BsrI	ACTGG	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	776
BssECI	CCNNGG	2 cut(s)	589, 771
BssMI	GATC	5 cut(s)	331, 370, 435, 706, 825
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	3 cut(s)	164, 667, 772
Bst4CI	ACNGT	2 cut(s)	170, 638
Bst6I	CTCTTC	4 cut(s)	149, 516, 843, 876
BstC8I	GCNNGC	1 cut(s)	778
BstDEI	CTNAG	1 cut(s)	854
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	5 cut(s)	334, 373, 438, 709, 828
BstMAI	GTCTC	2 cut(s)	423, 588
BstMBI	GATC	5 cut(s)	331, 370, 435, 706, 825
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 408
BstNI	CCWGG	3 cut(s)	164, 667, 772
BstSCI	CCNGG	4 cut(s)	162, 665, 770, 786
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	649
BstV2I	GAAGAC	1 cut(s)	816
BsuI	GTATCC	1 cut(s)	952
BsuRI	GGCC	5 cut(s)	295, 694, 758, 770, 776
BtgZI	GCGATG	1 cut(s)	795
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	4 cut(s)	393, 621, 634, 657
Cac8I	GCNNGC	1 cut(s)	778
Cfr10I	RCCGGY	1 cut(s)	776
Cfr13I	GGNCC	6 cut(s)	170, 293, 586, 756, 768, 774
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	2 cut(s)	306, 701
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	854
DpnI	GATC	5 cut(s)	333, 372, 437, 708, 827
DpnII	GATC	5 cut(s)	331, 370, 435, 706, 825
EaeI	YGGCCR	1 cut(s)	692
Eam1104I	CTCTTC	4 cut(s)	149, 516, 843, 876
EarI	CTCTTC	4 cut(s)	149, 516, 843, 876
Eco130I	CCWWGG	1 cut(s)	589
Eco31I	GGTCTC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	170, 586
Eco57I	CTGAAG	2 cut(s)	93, 399
Eco88I	CYCGRG	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	646
EcoRII	CCWGG	3 cut(s)	162, 665, 770
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	2 cut(s)	309, 704
FaiI	YATR	9 cut(s)	104, 128, 155, 307, 396, 542, 672, 702, 754
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	2 cut(s)	305, 700
FauI	CCCGC	1 cut(s)	245
FbaI	TGATCA	2 cut(s)	331, 370
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	663
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	663
FspBI	CTAG	3 cut(s)	81, 503, 686
GluI	GCNGC	1 cut(s)	663
GsaI	CCCAGC	1 cut(s)	903
HaeIII	GGCC	5 cut(s)	295, 694, 758, 770, 776
HapII	CCGG	2 cut(s)	777, 788
Hin1II	CATG	2 cut(s)	309, 704
HinfI	GANTC	4 cut(s)	46, 130, 631, 681
HpaII	CCGG	2 cut(s)	777, 788
HphI	GGTGA	6 cut(s)	71, 461, 472, 502, 583, 811
Hpy166II	GTNNAC	3 cut(s)	15, 508, 586
Hpy188I	TCNGA	1 cut(s)	711
Hpy188III	TCNNGA	2 cut(s)	181, 426
Hpy8I	GTNNAC	3 cut(s)	15, 508, 586
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	5 cut(s)	374, 487, 547, 796, 856
HpyCH4III	ACNGT	2 cut(s)	170, 638
HpyCH4V	TGCA	4 cut(s)	95, 347, 722, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 408
HpyF3I	CTNAG	1 cut(s)	854
Hsp92II	CATG	2 cut(s)	309, 704
KroI	GCCGGC	1 cut(s)	776
KroNI	GCCGGC	1 cut(s)	778
Ksp22I	TGATCA	2 cut(s)	331, 370
Kzo9I	GATC	5 cut(s)	331, 370, 435, 706, 825
LguI	GCTCTTC	1 cut(s)	843
Lsp1109I	GCAGC	1 cut(s)	649
LweI	GCATC	2 cut(s)	55, 828
MaeI	CTAG	3 cut(s)	81, 503, 686
MaeIII	GTNAC	5 cut(s)	120, 605, 632, 733, 908
MalI	GATC	5 cut(s)	333, 372, 437, 708, 827
MboI	GATC	5 cut(s)	331, 370, 435, 706, 825
MboII	GAAGA	9 cut(s)	99, 136, 530, 533, 821, 835, 860, 883, 893
MfeI	CAATTG	1 cut(s)	335
MlsI	TGGCCA	1 cut(s)	694
MluCI	AATT	5 cut(s)	41, 75, 335, 646, 916
MluNI	TGGCCA	1 cut(s)	694
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	1 cut(s)	623
Mox20I	TGGCCA	1 cut(s)	694
MroNI	GCCGGC	1 cut(s)	776
MscI	TGGCCA	1 cut(s)	694
MseI	TTAA	2 cut(s)	87, 189
MslI	CAYNNNNRTG	1 cut(s)	818
Msp20I	TGGCCA	1 cut(s)	694
MspI	CCGG	2 cut(s)	777, 788
MspR9I	CCNGG	4 cut(s)	164, 667, 772, 788
MunI	CAATTG	1 cut(s)	335
MvaI	CCWGG	3 cut(s)	164, 667, 772
MwoI	GCNNNNNNNGC	2 cut(s)	301, 408
NaeI	GCCGGC	1 cut(s)	778
NciI	CCSGG	1 cut(s)	788
NdeII	GATC	5 cut(s)	331, 370, 435, 706, 825
NgoMIV	GCCGGC	1 cut(s)	776
NlaIII	CATG	2 cut(s)	309, 704
NlaIV	GGNNCC	1 cut(s)	905
NmuCI	GTSAC	4 cut(s)	605, 632, 733, 908
PciSI	GCTCTTC	1 cut(s)	843
PdiI	GCCGGC	1 cut(s)	778
PfeI	GAWTC	3 cut(s)	46, 130, 681
PflMI	CCANNNNNTGG	2 cut(s)	701, 765
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	664
PleI	GAGTC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	639
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	3 cut(s)	162, 665, 770
PspFI	CCCAGC	1 cut(s)	899
PspGI	CCWGG	3 cut(s)	162, 665, 770
PspN4I	GGNNCC	1 cut(s)	905
PspPI	GGNCC	6 cut(s)	170, 293, 586, 756, 768, 774
PstI	CTGCAG	1 cut(s)	97
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	818
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	2 cut(s)	87, 189
SatI	GCNGC	1 cut(s)	663
Sau3AI	GATC	5 cut(s)	331, 370, 435, 706, 825
Sau96I	GGNCC	6 cut(s)	170, 293, 586, 756, 768, 774
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	4 cut(s)	164, 667, 772, 788
SfaNI	GCATC	2 cut(s)	55, 828
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	2 cut(s)	170, 586
SmiMI	CAYNNNNRTG	1 cut(s)	818
Sse9I	AATT	5 cut(s)	41, 75, 335, 646, 916
SsiI	CCGC	3 cut(s)	233, 252, 797
SspMI	CTAG	3 cut(s)	81, 503, 686
StyD4I	CCNGG	4 cut(s)	162, 665, 770, 786
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	2 cut(s)	170, 638
TaqI	TCGA	3 cut(s)	213, 264, 425
TasI	AATT	5 cut(s)	41, 75, 335, 646, 916
TfiI	GAWTC	3 cut(s)	46, 130, 681
Tru1I	TTAA	2 cut(s)	87, 189
Tru9I	TTAA	2 cut(s)	87, 189
TscAI	CASTG	4 cut(s)	393, 621, 641, 657
TseFI	GTSAC	4 cut(s)	605, 632, 733, 908
TseI	GCWGC	1 cut(s)	662
Tsp45I	GTSAC	4 cut(s)	605, 632, 733, 908
TspDTI	ATGAA	3 cut(s)	143, 148, 566
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	4 cut(s)	393, 621, 641, 657
Van91I	CCANNNNNTGG	2 cut(s)	701, 765
VpaK11BI	GGWCC	2 cut(s)	170, 586
VspI	ATTAAT	1 cut(s)	87
XapI	RAATTY	3 cut(s)	75, 646, 916
XmiI	GTMKAC	1 cut(s)	507
XspI	CTAG	3 cut(s)	81, 503, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.