Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

4538567 .. 4539918

Gene Structure 1352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1064500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCAGCAGACTCCGGCAGCCTTCTCCAAACCCCCGAAACTCATGTCGTTCTTTTACCCAGCTCCCAGATGGGGCACTTGACACCCATGCTACGACTTGCCGCCTTATTACTTGCCCAGAACTACTGCCCACTGAGGCTCACCCTCATCACCGCCCACCCCACCGTCTCCCTCGCCGAGTCAGCTCTCATCTCCCGCTTCCTCTCAGCTTACCACGACCGAGTTACTCACCTCCAGTTCCATCCTTTTTCTATACACCCTTCCACCGTGAATTCCACCGACCCGTTTTGGATCCAGTTTGAAGTCATCCGCTGCTCCGCTCACCTCCTAACTCCTTTGCTTTCCACTCTCTCTCCTCCTGCCTCCGCCCTCATCTACGACATCACCCAACTCAACGATGACGATGTTCTTCCCATCCCCGGCATTAATCCGCCATTACGCAAATCAACGATTCCTCCATTGCTCTGCGTTCCCAACAGCCTCTTTTCCAATATCTTCATAGAGGACGGTCCGAATCTCCAGAAACTAGCTGGAGTTCTGATTTTCACGTTTGAAGCGCTGGAAGCAGAGGGGCCGGAGGCGATCAGCGGCGGGTCGCCTCCAGTTTTCTCTGTCGGGCCTTTCGTACCCTGCGAATTTGAGAAGCTGCCTGCACATGGGGATGGTGATCAATGCGGCGGTGATCCAGGGCAACCGCAACCGTTTGAGTGGCTTAATGAACAGCCTGATGGGTCGGTGGTGTATGTGGCCTTCGGAAGCAAGACAGCTCTGTCAAGTGAGCACATCAGAGAGGTGGGAGATGGCTTGGAGAAAAGCAGGTTCAGGTTCTTGTGTGTGGTGAAGGAGAAGATGGTTGACAGTGAAGAGGAAGGAGGAGAGGGTAATTTGGTAAGAATAGAGGGGAGGGGGCTGGTGGTGAGAAGGTGGGCGGAGCAAGGGGAAATCTTGGGGCATAGAGCAGTGGGCGGGTTTTTGAGCCACAGCGGGTGGAACTCGGTGGTTGAGGCGGCGTGGCACGGCGTTAGGGACCTTGCATGGCCGCAGAACGGGGACCAAAATGTGGTTGCGGAGGTGGCTGAGATATGTGGGCTCGGAATTTGGGAGAAATCATGGCTTTGGAGTGGCGACCGTGAGAAGAAGTTGGTTAAGGGAGATGAGATTGCTGTGAAGATTAAGGAATTGATGGACAGTGATGGCTGCGAGGATCGGAGAAGCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

407

Amino Acids

44.3

Weight (kDa)

4.99

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	239 - 356	4.9e-10	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	769
Acc36I	ACCTGC	1 cut(s)	807
AccB7I	CCANNNNNTGG	1 cut(s)	1060
AccBSI	CCGCTC	1 cut(s)	320
AclWI	GGATC	4 cut(s)	286, 299, 677, 1212
AcoI	YGGCCR	1 cut(s)	1037
AcsI	RAATTY	3 cut(s)	271, 635, 1095
AfaI	GTAC	1 cut(s)	627
AfeI	AGCGCT	1 cut(s)	558
AfiI	CCNNNNNNNGG	5 cut(s)	72, 419, 656, 1046, 1060
AgsI	TTSAA	2 cut(s)	302, 554
AjnI	CCWGG	1 cut(s)	685
AluBI	AGCT	6 cut(s)	63, 185, 209, 530, 646, 767
AluI	AGCT	6 cut(s)	63, 185, 209, 530, 646, 767
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	4 cut(s)	286, 299, 677, 1212
Aor51HI	AGCGCT	1 cut(s)	558
AoxI	GGCC	4 cut(s)	572, 617, 747, 1037
ApeKI	GCWGC	5 cut(s)	5, 18, 312, 646, 1197
ApoI	RAATTY	3 cut(s)	271, 635, 1095
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AseI	ATTAAT	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	5 cut(s)	509, 572, 617, 1027, 1051
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	9 cut(s)	133, 142, 221, 314, 376, 677, 692, 850, 928
AvaII	GGWCC	3 cut(s)	509, 1027, 1051
BaeGI	GKGCMC	1 cut(s)	78
BamHI	GGATCC	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	1092
BarI	GAAGNNNNNNTAC	2 cut(s)	734, 766
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	5 cut(s)	17, 30, 299, 633, 1184
BccI	CCATC	9 cut(s)	64, 249, 422, 656, 722, 794, 844, 1177, 1187
BceAI	ACGGC	1 cut(s)	1033
BciT130I	CCWGG	1 cut(s)	687
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	527
BfoI	RGCGCY	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	807
Bme1390I	CCNGG	2 cut(s)	420, 687
Bme18I	GGWCC	3 cut(s)	509, 1027, 1051
BmgT120I	GGNCC	5 cut(s)	509, 572, 617, 1027, 1051
BmiI	GGNNCC	4 cut(s)	293, 573, 1028, 1052
BmrFI	CCNGG	2 cut(s)	420, 687
BpmI	CTGGAG	4 cut(s)	218, 503, 552, 585
BpuMI	CCSGG	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	666
BsaJI	CCNNGG	2 cut(s)	418, 686
BsaXI	ACNNNNNCTCC	4 cut(s)	337, 367, 439, 469
Bsc4I	CCNNNNNNNGG	5 cut(s)	72, 419, 656, 1046, 1060
Bse1I	ACTGG	3 cut(s)	235, 295, 602
Bse3DI	GCAATG	1 cut(s)	458
Bse8I	GATNNNNATC	1 cut(s)	666
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	2 cut(s)	418, 686
BseGI	GGATG	4 cut(s)	241, 306, 414, 667
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	5 cut(s)	72, 419, 656, 1046, 1060
BseMI	GCAATG	1 cut(s)	458
BseMII	CTCAG	3 cut(s)	125, 219, 1068
BseNI	ACTGG	3 cut(s)	235, 295, 602
BseRI	GAGGAG	2 cut(s)	345, 888
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	5 cut(s)	17, 30, 299, 633, 1184
BseYI	CCCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	636
Bsh1285I	CGRYCG	2 cut(s)	220, 1129
BshFI	GGCC	4 cut(s)	574, 619, 749, 1039
BsiEI	CGRYCG	2 cut(s)	220, 1129
BsiHKAI	GWGCWC	1 cut(s)	783
BsiSI	CCGG	3 cut(s)	15, 420, 575
BslFI	GGGAC	2 cut(s)	1040, 1064
BslI	CCNNNNNNNGG	5 cut(s)	72, 419, 656, 1046, 1060
BsmAI	GTCTC	1 cut(s)	172
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	1040, 1064
BsnI	GGCC	4 cut(s)	574, 619, 749, 1039
Bsp1286I	GDGCHC	3 cut(s)	78, 783, 1092
Bsp143I	GATC	5 cut(s)	291, 582, 667, 682, 1204
BspANI	GGCC	4 cut(s)	574, 619, 749, 1039
BspCNI	CTCAG	3 cut(s)	126, 218, 1069
BspLI	GGNNCC	4 cut(s)	293, 573, 1028, 1052
BspMI	ACCTGC	1 cut(s)	807
BspPI	GGATC	4 cut(s)	286, 299, 677, 1212
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	458
BsrI	ACTGG	3 cut(s)	235, 295, 602
BssECI	CCNNGG	2 cut(s)	418, 686
BssMI	GATC	5 cut(s)	291, 582, 667, 682, 1204
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	7 cut(s)	166, 268, 509, 702, 860, 1130, 1190
Bst6I	CTCTTC	1 cut(s)	858
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	3 cut(s)	134, 205, 1077
BstF5I	GGATG	4 cut(s)	241, 306, 414, 667
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	5 cut(s)	294, 585, 670, 685, 1207
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	5 cut(s)	291, 582, 667, 682, 1204
BstMCI	CGRYCG	2 cut(s)	220, 1129
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 563, 1073
BstNI	CCWGG	1 cut(s)	687
BstSCI	CCNGG	2 cut(s)	418, 685
BstSLI	GKGCMC	1 cut(s)	78
BstV1I	GCAGC	5 cut(s)	17, 30, 299, 633, 1184
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	4 cut(s)	574, 619, 749, 1039
BtsCI	GGATG	4 cut(s)	241, 306, 414, 667
BtsI	GCAGTG	1 cut(s)	966
BtsIMutI	CAGTG	4 cut(s)	131, 865, 966, 1195
BveI	ACCTGC	1 cut(s)	807
Cac8I	GCNNGC	1 cut(s)	651
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	5 cut(s)	509, 572, 617, 1027, 1051
CpoI	CGGWCCG	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	626
CspI	CGGWCCG	1 cut(s)	509
CviAII	CATG	5 cut(s)	44, 88, 656, 1035, 1110
CviQI	GTAC	1 cut(s)	626
DdeI	CTNAG	3 cut(s)	134, 205, 1077
DpnI	GATC	5 cut(s)	293, 584, 669, 684, 1206
DpnII	GATC	5 cut(s)	291, 582, 667, 682, 1204
DrdI	GACNNNNNNGTC	1 cut(s)	769
DseDI	GACNNNNNNGTC	1 cut(s)	769
EaeI	YGGCCR	1 cut(s)	1037
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
EciI	GGCGGA	3 cut(s)	355, 420, 944
Eco24I	GRGCYC	1 cut(s)	1092
Eco47I	GGWCC	3 cut(s)	509, 1027, 1051
Eco47III	AGCGCT	1 cut(s)	558
EcoO109I	RGGNCCY	1 cut(s)	1027
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	685
EcoT38I	GRGCYC	1 cut(s)	1092
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	5 cut(s)	47, 91, 659, 1038, 1113
FaqI	GGGAC	2 cut(s)	1040, 1064
FatI	CATG	5 cut(s)	43, 87, 655, 1034, 1109
FauI	CCCGC	4 cut(s)	203, 584, 959, 977
FbaI	TGATCA	1 cut(s)	667
FokI	GGATG	4 cut(s)	228, 293, 401, 674
FriOI	GRGCYC	1 cut(s)	1092
FspBI	CTAG	1 cut(s)	527
GlaI	GCGC	1 cut(s)	558
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	4 cut(s)	218, 503, 552, 585
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	4 cut(s)	574, 619, 749, 1039
HapII	CCGG	3 cut(s)	15, 420, 575
HhaI	GCGC	1 cut(s)	559
Hin1II	CATG	5 cut(s)	47, 91, 659, 1038, 1113
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	4 cut(s)	11, 179, 451, 514
HpaII	CCGG	3 cut(s)	15, 420, 575
HphI	GGTGA	9 cut(s)	133, 142, 221, 314, 376, 677, 692, 850, 928
Hpy166II	GTNNAC	1 cut(s)	856
Hpy188I	TCNGA	6 cut(s)	513, 540, 755, 788, 1094, 1209
Hpy188III	TCNNGA	1 cut(s)	520
Hpy8I	GTNNAC	1 cut(s)	856
HpyAV	CCTTC	6 cut(s)	32, 270, 760, 835, 863, 915
HpyCH4III	ACNGT	7 cut(s)	166, 268, 509, 702, 860, 1130, 1190
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	2 cut(s)	653, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 563, 1073
HpyF3I	CTNAG	3 cut(s)	134, 205, 1077
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	5 cut(s)	47, 91, 659, 1038, 1113
HspAI	GCGC	1 cut(s)	557
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	5 cut(s)	291, 582, 667, 682, 1204
LmnI	GCTCC	3 cut(s)	68, 320, 931
Lsp1109I	GCAGC	5 cut(s)	17, 30, 299, 633, 1184
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	5 cut(s)	293, 584, 669, 684, 1206
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	5 cut(s)	291, 582, 667, 682, 1204
MboII	GAAGA	6 cut(s)	401, 487, 859, 875, 1147, 1180
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	3 cut(s)	78, 783, 1092
MluCI	AATT	5 cut(s)	271, 635, 883, 1095, 1178
MlyI	GAGTC	2 cut(s)	5, 188
MseI	TTAA	4 cut(s)	426, 714, 1146, 1173
MslI	CAYNNNNRTG	1 cut(s)	660
MspA1I	CMGCKG	3 cut(s)	312, 588, 984
MspI	CCGG	3 cut(s)	15, 420, 575
MspR9I	CCNGG	2 cut(s)	420, 687
MvaI	CCWGG	1 cut(s)	687
MwoI	GCNNNNNNNGC	3 cut(s)	182, 563, 1073
NciI	CCSGG	1 cut(s)	420
NdeII	GATC	5 cut(s)	291, 582, 667, 682, 1204
NlaIII	CATG	5 cut(s)	47, 91, 659, 1038, 1113
NlaIV	GGNNCC	4 cut(s)	293, 573, 1028, 1052
NmeAIII	GCCGAG	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	2 cut(s)	621, 630
PfeI	GAWTC	2 cut(s)	451, 514
PflMI	CCANNNNNTGG	1 cut(s)	1060
PleI	GAGTC	2 cut(s)	5, 187
PpsI	GAGTC	2 cut(s)	5, 187
PpuMI	RGGWCCY	1 cut(s)	1027
PshBI	ATTAAT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	1027
Psp6I	CCWGG	1 cut(s)	685
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	4 cut(s)	293, 573, 1028, 1052
PspPI	GGNCC	5 cut(s)	509, 572, 617, 1027, 1051
PspPPI	RGGWCCY	1 cut(s)	1027
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	1 cut(s)	627
RsaNI	GTAC	1 cut(s)	626
RseI	CAYNNNNRTG	1 cut(s)	660
Rsr2I	CGGWCCG	1 cut(s)	509
RsrII	CGGWCCG	1 cut(s)	509
SaqAI	TTAA	4 cut(s)	426, 714, 1146, 1173
Sau3AI	GATC	5 cut(s)	291, 582, 667, 682, 1204
Sau96I	GGNCC	5 cut(s)	509, 572, 617, 1027, 1051
SchI	GAGTC	2 cut(s)	5, 188
ScrFI	CCNGG	2 cut(s)	420, 687
SduI	GDGCHC	3 cut(s)	78, 783, 1092
SinI	GGWCC	3 cut(s)	509, 1027, 1051
SmiMI	CAYNNNNRTG	1 cut(s)	660
Sse9I	AATT	5 cut(s)	271, 635, 883, 1095, 1178
SspMI	CTAG	1 cut(s)	527
StyD4I	CCNGG	2 cut(s)	418, 685
TaaI	ACNGT	7 cut(s)	166, 268, 509, 702, 860, 1130, 1190
TaiI	ACGT	1 cut(s)	551
TaqII	GACCGA	1 cut(s)	234
TasI	AATT	5 cut(s)	271, 635, 883, 1095, 1178
TauI	GCSGC	6 cut(s)	104, 591, 678, 1010, 1042, 1218
TfiI	GAWTC	2 cut(s)	451, 514
Tru1I	TTAA	4 cut(s)	426, 714, 1146, 1173
Tru9I	TTAA	4 cut(s)	426, 714, 1146, 1173
TscAI	CASTG	4 cut(s)	138, 865, 966, 1195
TseI	GCWGC	5 cut(s)	5, 18, 312, 646, 1197
TspDTI	ATGAA	2 cut(s)	487, 732
TspRI	CASTG	4 cut(s)	138, 865, 966, 1195
Van91I	CCANNNNNTGG	1 cut(s)	1060
VpaK11BI	GGWCC	3 cut(s)	509, 1027, 1051
VspI	ATTAAT	1 cut(s)	426
XapI	RAATTY	3 cut(s)	271, 635, 1095
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 527
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.