Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00270

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

123510 .. 124823

Gene Structure 1314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTCATCAGAATGCGGTAACGTCCTCCTCCGGCGAGCCCAGGCTCATGTCGTTCTCCTCCCAAGCGCCGGCATGGGCCATCTGACACCCTTTCTACGACTTGCCGCATTGCTATCCCAAAACCACCGCTGCCAGCTGACCCTCATCACCACCCACCCCACTGTCTCACTCGCCGAGTCTTCTCTCATCTCTCGCTTCCTCTCTGCCTTCCCTCACGTCACTCAAATCCATTTCCACCTCCTTCCTCTCGACCCCCACCACCGTCAACTCAACCGACCCCTTTTTCCTCAGATTCGAAGCCATTCGCCGCTCCGCTCATCTCCTCTCCCCCCTGCTCTCCTCTCTTTCCTCGCCTCCCTCTGCTCTCAAACAGAGGAGGTGGAGTTGCTGAATGGAGGAAAACTAATCGAAGCGTTGCCTCCACTATTTGCTGTTGGGCCTTTAGTGCCCTGTGAGTTTGAGAAGGTTGATGATGAACAATTGGGAAATGCACAACTATTGAAGTGGCTTGATGATCAGGCTGAAGGGTCAGTGGTGTATGTGAGCTTTGGAAGCAGAACAGCTCTCTCAAGAGATCAGATCAAAGAGCTTGGTGATGGGTTGGTGAGATGTGGGTTTCGGTTTCTGTGGGTGGTGAAGGAGAAGCTAGTAGACAGAGAGGAAGAAGAGGGTAGTTTGGAGATTATGGAGAAAATGGAGGGCAAAGGGTTGGTGGTGAAGCATTGGGTGGACCAAGGAGACATCTTGGGTCACAAGGCAGTGGGAGGGTTTTTGAGTCACTGTGGTTGGAATTCAGTGGTGGAAGCTGCCTGGTATGGTGTAAGAATCCTAGCTTGGCCACAAAATGGGGATCAGAAGCTCAATGCAGAGGTGGTTGAGAGAAGTGGGCTTGGGATATGGGCCAGAACTTGGGCCTGGACCGGAGATGACCCGGTGGTGGTGGTGAAGGGTGAAGACATTGCTGTGAAGATCAAAGATCTGATGAGCTCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

331

Amino Acids

36.66

Weight (kDa)

5.91

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	173 - 305	1.3e-15	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	845, 909
AccBSI	CCGCTC	2 cut(s)	310, 315
AccI	GTMKAC	1 cut(s)	651
AciI	CCGC	5 cut(s)	15, 105, 127, 308, 313
AclWI	GGATC	1 cut(s)	858
AcoI	YGGCCR	1 cut(s)	836
AcsI	RAATTY	1 cut(s)	790
AcuI	CTGAAG	1 cut(s)	543
AfiI	CCNNNNNNNGG	4 cut(s)	68, 845, 909, 937
AgsI	TTSAA	1 cut(s)	502
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	3 cut(s)	39, 809, 914
AjuI	GAANNNNNNNTTGG	2 cut(s)	817, 849
AluBI	AGCT	9 cut(s)	136, 546, 563, 589, 646, 806, 833, 859, 987
AluI	AGCT	9 cut(s)	136, 546, 563, 589, 646, 806, 833, 859, 987
Alw21I	GWGCWC	1 cut(s)	989
Alw26I	GTCTC	2 cut(s)	169, 732
AlwI	GGATC	1 cut(s)	858
AoxI	GGCC	5 cut(s)	76, 437, 836, 900, 912
ApeKI	GCWGC	2 cut(s)	129, 806
ApoI	RAATTY	1 cut(s)	790
Asp700I	GAANNNNTTC	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	6 cut(s)	76, 437, 730, 900, 912, 918
AsuC2I	CCSGG	1 cut(s)	932
AsuHPI	GGTGA	7 cut(s)	139, 605, 616, 646, 727, 955, 962
AsuII	TTCGAA	1 cut(s)	295
AvaII	GGWCC	2 cut(s)	730, 918
BaeGI	GKGCMC	1 cut(s)	450
BalI	TGGCCA	1 cut(s)	838
BanII	GRGCYC	2 cut(s)	40, 989
BbsI	GAAGAC	2 cut(s)	171, 960
Bbv12I	GWGCWC	1 cut(s)	989
BbvI	GCAGC	2 cut(s)	116, 793
BccI	CCATC	2 cut(s)	87, 590
BciT130I	CCWGG	3 cut(s)	41, 811, 916
BclI	TGATCA	1 cut(s)	514
BcnI	CCSGG	1 cut(s)	932
BcoDI	GTCTC	2 cut(s)	169, 732
BfaI	CTAG	2 cut(s)	647, 830
BfoI	RGCGCY	1 cut(s)	69
BglII	AGATCT	1 cut(s)	976
BisI	GCNGC	4 cut(s)	105, 130, 308, 807
BlsI	GCNGC	4 cut(s)	106, 131, 309, 808
Bme1390I	CCNGG	4 cut(s)	41, 811, 916, 932
Bme18I	GGWCC	2 cut(s)	730, 918
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	6 cut(s)	76, 437, 730, 900, 912, 918
BmrFI	CCNGG	4 cut(s)	41, 811, 916, 932
BpiI	GAAGAC	2 cut(s)	171, 960
Bpu14I	TTCGAA	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	553
BpuMI	CCSGG	1 cut(s)	932
BsaJI	CCNNGG	2 cut(s)	39, 733
BsaWI	WCCGGW	1 cut(s)	920
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 845, 909, 937
Bse118I	RCCGGY	1 cut(s)	68
Bse3DI	GCAATG	2 cut(s)	107, 957
BseBI	CCWGG	3 cut(s)	41, 811, 916
BseDI	CCNNGG	2 cut(s)	39, 733
BseLI	CCNNNNNNNGG	4 cut(s)	68, 845, 909, 937
BseMI	GCAATG	2 cut(s)	107, 957
BseMII	CTCAG	1 cut(s)	302
BseRI	GAGGAG	5 cut(s)	17, 47, 312, 329, 389
BseSI	GKGCMC	1 cut(s)	450
BseXI	GCAGC	2 cut(s)	116, 793
BshFI	GGCC	5 cut(s)	78, 439, 838, 902, 914
BsiHKAI	GWGCWC	1 cut(s)	989
BsiSI	CCGG	4 cut(s)	31, 69, 921, 932
BslI	CCNNNNNNNGG	4 cut(s)	68, 845, 909, 937
BsmAI	GTCTC	2 cut(s)	169, 732
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	5 cut(s)	78, 439, 838, 902, 914
Bsp119I	TTCGAA	1 cut(s)	295
Bsp1286I	GDGCHC	3 cut(s)	40, 450, 989
Bsp143I	GATC	6 cut(s)	514, 574, 579, 850, 969, 976
BspACI	CCGC	5 cut(s)	15, 105, 127, 308, 313
BspANI	GGCC	5 cut(s)	78, 439, 838, 902, 914
BspCNI	CTCAG	1 cut(s)	301
BspPI	GGATC	1 cut(s)	858
BspT104I	TTCGAA	1 cut(s)	295
BsrBI	CCGCTC	2 cut(s)	310, 315
BsrDI	GCAATG	2 cut(s)	107, 957
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	39, 733
BssMI	GATC	6 cut(s)	514, 574, 579, 850, 969, 976
BssT1I	CCWWGG	1 cut(s)	733
Bst2UI	CCWGG	3 cut(s)	41, 811, 916
Bst4CI	ACNGT	3 cut(s)	163, 263, 782
Bst6I	CTCTTC	1 cut(s)	660
BstBI	TTCGAA	1 cut(s)	295
BstC8I	GCNNGC	3 cut(s)	36, 70, 134
BstDEI	CTNAG	2 cut(s)	288, 988
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	6 cut(s)	517, 577, 582, 853, 972, 979
BstMAI	GTCTC	2 cut(s)	169, 732
BstMBI	GATC	6 cut(s)	514, 574, 579, 850, 969, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	445, 552
BstNI	CCWGG	3 cut(s)	41, 811, 916
BstSCI	CCNGG	4 cut(s)	39, 809, 914, 930
BstSLI	GKGCMC	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	116, 793
BstV2I	GAAGAC	2 cut(s)	171, 960
BstX2I	RGATCY	1 cut(s)	976
BstYI	RGATCY	1 cut(s)	976
BsuRI	GGCC	5 cut(s)	78, 439, 838, 902, 914
BtrI	CACGTC	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	5 cut(s)	159, 537, 765, 778, 801
Cac8I	GCNNGC	3 cut(s)	36, 70, 134
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	6 cut(s)	76, 437, 730, 900, 912, 918
CviAII	CATG	2 cut(s)	47, 73
DdeI	CTNAG	2 cut(s)	288, 988
DpnI	GATC	6 cut(s)	516, 576, 581, 852, 971, 978
DpnII	GATC	6 cut(s)	514, 574, 579, 850, 969, 976
EaeI	YGGCCR	1 cut(s)	836
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	987
Eco130I	CCWWGG	1 cut(s)	733
Eco24I	GRGCYC	2 cut(s)	40, 989
Eco47I	GGWCC	2 cut(s)	730, 918
Eco53kI	GAGCTC	1 cut(s)	987
Eco57I	CTGAAG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	987
EcoRI	GAATTC	1 cut(s)	790
EcoRII	CCWGG	3 cut(s)	39, 809, 914
EcoT14I	CCWWGG	1 cut(s)	733
EcoT38I	GRGCYC	2 cut(s)	40, 989
ErhI	CCWWGG	1 cut(s)	733
FaeI	CATG	2 cut(s)	50, 76
FaiI	YATR	6 cut(s)	48, 74, 540, 686, 816, 898
FatI	CATG	2 cut(s)	46, 72
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	4 cut(s)	105, 130, 308, 807
FriOI	GRGCYC	2 cut(s)	40, 989
Fsp4HI	GCNGC	4 cut(s)	105, 130, 308, 807
FspBI	CTAG	2 cut(s)	647, 830
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	4 cut(s)	105, 130, 308, 807
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	5 cut(s)	78, 439, 838, 902, 914
HapII	CCGG	4 cut(s)	31, 69, 921, 932
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	50, 76
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HinfI	GANTC	4 cut(s)	176, 292, 775, 825
HpaII	CCGG	4 cut(s)	31, 69, 921, 932
HphI	GGTGA	7 cut(s)	139, 605, 616, 646, 727, 955, 962
Hpy166II	GTNNAC	3 cut(s)	266, 652, 730
Hpy188I	TCNGA	7 cut(s)	10, 84, 291, 579, 855, 981, 991
Hpy188III	TCNNGA	2 cut(s)	248, 570
Hpy8I	GTNNAC	3 cut(s)	266, 652, 730
HpyAV	CCTTC	6 cut(s)	217, 251, 457, 518, 631, 940
HpyCH4III	ACNGT	3 cut(s)	163, 263, 782
HpyCH4IV	ACGT	2 cut(s)	21, 216
HpyCH4V	TGCA	2 cut(s)	491, 866
HpyF10VI	GCNNNNNNNGC	2 cut(s)	445, 552
HpyF3I	CTNAG	2 cut(s)	288, 988
HpySE526I	ACGT	2 cut(s)	21, 216
Hsp92II	CATG	2 cut(s)	50, 76
HspAI	GCGC	1 cut(s)	66
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	6 cut(s)	514, 574, 579, 850, 969, 976
LmnI	GCTCC	1 cut(s)	315
Lsp1109I	GCAGC	2 cut(s)	116, 793
MaeI	CTAG	2 cut(s)	647, 830
MaeII	ACGT	2 cut(s)	21, 216
MaeIII	GTNAC	4 cut(s)	17, 217, 749, 776
MalI	GATC	6 cut(s)	516, 576, 581, 852, 971, 978
MbiI	CCGCTC	2 cut(s)	310, 315
MboI	GATC	6 cut(s)	514, 574, 579, 850, 969, 976
MboII	GAAGA	5 cut(s)	171, 674, 677, 965, 979
MfeI	CAATTG	1 cut(s)	479
MflI	RGATCY	1 cut(s)	976
MhlI	GDGCHC	3 cut(s)	40, 450, 989
MlsI	TGGCCA	1 cut(s)	838
MluCI	AATT	2 cut(s)	479, 790
MluNI	TGGCCA	1 cut(s)	838
MlyI	GAGTC	2 cut(s)	185, 784
MmeI	TCCRAC	1 cut(s)	767
Mox20I	TGGCCA	1 cut(s)	838
MroNI	GCCGGC	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	301
MscI	TGGCCA	1 cut(s)	838
MslI	CAYNNNNRTG	2 cut(s)	10, 962
Msp20I	TGGCCA	1 cut(s)	838
MspA1I	CMGCKG	2 cut(s)	129, 136
MspI	CCGG	4 cut(s)	31, 69, 921, 932
MspR9I	CCNGG	4 cut(s)	41, 811, 916, 932
MunI	CAATTG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	3 cut(s)	41, 811, 916
MwoI	GCNNNNNNNGC	2 cut(s)	445, 552
NaeI	GCCGGC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	932
NdeII	GATC	6 cut(s)	514, 574, 579, 850, 969, 976
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	2 cut(s)	50, 76
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	3 cut(s)	217, 749, 776
NspV	TTCGAA	1 cut(s)	295
PctI	GAATGC	1 cut(s)	17
PdiI	GCCGGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	292, 825
PflMI	CCANNNNNTGG	2 cut(s)	845, 909
PkrI	GCNGC	4 cut(s)	106, 131, 309, 808
PleI	GAGTC	2 cut(s)	184, 783
PpsI	GAGTC	2 cut(s)	184, 783
Psp124BI	GAGCTC	1 cut(s)	989
Psp6I	CCWGG	3 cut(s)	39, 809, 914
PspGI	CCWGG	3 cut(s)	39, 809, 914
PspPI	GGNCC	6 cut(s)	76, 437, 730, 900, 912, 918
PsuI	RGATCY	1 cut(s)	976
PvuII	CAGCTG	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	10, 962
SacI	GAGCTC	1 cut(s)	989
SatI	GCNGC	4 cut(s)	105, 130, 308, 807
Sau3AI	GATC	6 cut(s)	514, 574, 579, 850, 969, 976
Sau96I	GGNCC	6 cut(s)	76, 437, 730, 900, 912, 918
SchI	GAGTC	2 cut(s)	185, 784
ScrFI	CCNGG	4 cut(s)	41, 811, 916, 932
SduI	GDGCHC	3 cut(s)	40, 450, 989
SfuI	TTCGAA	1 cut(s)	295
SinI	GGWCC	2 cut(s)	730, 918
SmiMI	CAYNNNNRTG	2 cut(s)	10, 962
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
Sse9I	AATT	2 cut(s)	479, 790
SsiI	CCGC	5 cut(s)	15, 105, 127, 308, 313
SspMI	CTAG	2 cut(s)	647, 830
SstI	GAGCTC	1 cut(s)	989
StyD4I	CCNGG	4 cut(s)	39, 809, 914, 930
StyI	CCWWGG	1 cut(s)	733
TaaI	ACNGT	3 cut(s)	163, 263, 782
TaiI	ACGT	2 cut(s)	24, 219
TaqI	TCGA	3 cut(s)	249, 295, 408
TasI	AATT	2 cut(s)	479, 790
TauI	GCSGC	2 cut(s)	107, 310
TfiI	GAWTC	2 cut(s)	292, 825
TscAI	CASTG	5 cut(s)	166, 537, 765, 785, 801
TseFI	GTSAC	3 cut(s)	217, 749, 776
TseI	GCWGC	2 cut(s)	129, 806
Tsp45I	GTSAC	3 cut(s)	217, 749, 776
TspDTI	ATGAA	1 cut(s)	489
TspRI	CASTG	5 cut(s)	166, 537, 765, 785, 801
Van91I	CCANNNNNTGG	2 cut(s)	845, 909
VpaK11BI	GGWCC	2 cut(s)	730, 918
XapI	RAATTY	1 cut(s)	790
XmiI	GTMKAC	1 cut(s)	651
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	2 cut(s)	647, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.