Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

36028466 .. 36029854

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGTCAGATTCCGGTGATCAAAGTTCTGTTCATCTCGCTCTCCTTCCGAGCGCTGGCATGGGTCACCTCACACCCTTCCTTCGACTCGCTGCTTTACTCACAGCACACAATGTTCGGGTCACTTTCATCACTCCCATTCCTACAGTCTCACTTGCAGAATCGCAGAGTTTGTCTCACTTGTCCACCACCTTCCCTCAGATCACTCAAAAGCATCTGCACCTCCTTCCACTAGATGAGCCGTCTGGCAATTCAGAAGACCCCTTTTACTACCATTTTGAGTTGACCCGCCGCTCTTCTCACCTGCTCCCTCCCCTTTTATCTTCACTCTCTCCACCTCTTTCCGCTATGATCACAGATATGAGCTTCTCCTCCACAGTTATTCCCATAACCGATTCTCTTGGACTTCCAAACTACATTTTCTTCACATCATCTGCCAAAATGTTGACACTTTATGTGTCCTTCCACACCATGATCGGCCCAAATGGTGAGATCAAAGATGGTCTCCAAGTTTCAGGTTTAGAGCCGATACCAAAAGCATGGATTCCTCCACCACTTCTCAAGGGCAGTGATAATCTTCTGAAGAGCTTTTTCATAGAGAATGGTAAGAAAATGATGGAGTCAACTGGAATTCTGATAAACACATATGAGAGTATAGAGCACGAGACACTAGCTGCACTAAACGAGGGTAGGGTATTAAAAGGGCTACCATCAGCAATTGCAATTGGCCCACTTCCACTGTGCAACTCTGAGAGAGACCAACAACTAGCTTGGCTAGATGATCAACCAACTGGATCAGTGTTCTATGTCAGCTTTGGGAGTAGGACTGCAATGTCAAGGGAGCAAATCAGAGAATTGGGTGAGGGCTTGGTGAGGAGTGGGTGTAGGTTTCTGTGGGTTGTGAAAGATAAGAAAGTTGACATGGAAGACGACGAGATACTGGCTGAGGTTCTAGGACAGGGGTTACTGGAAAGGGTGAAGGAAAAAGGAGTGGCAGTGAAGAATTGGCTGAACCAAGAGGAGGTATTGAGGCATCCTGCAATTGGTGGGTTTTTAAGTCATTGTGGTTGGAATTCCTTTAGTGAGGCTCTGTGGAATGGAGTGCCAATATTAGCATGGCCGCAACATGGGGACCAGAAAATCAATGCCAACTTGGTGGAGAGAATTGGGTTGGGAGTGTGGGTTAAAAGTTGGGGTTGGGGTGAGGAGGAGATGGTGGTAAAAGCAAAGGACATTGCAGCGAGGGTTAATGAGATTATGAGAAATGACTCACTGAGATTGAAAGCATTCCACATTAAAGAAGAGGCTAGAGTGGCAGTAGGAGATCGTGGTAGTTCTACAAAAAAACTCACTGCTCTCATTAAGACATGGAAGGAATTTCGAGTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

463

Amino Acids

51.17

Weight (kDa)

6.18

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	256 - 423	8.1e-19	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	309
AasI	GACNNNNNNGTC	1 cut(s)	829
Acc36I	ACCTGC	1 cut(s)	309
AccBSI	CCGCTC	1 cut(s)	291
AciI	CCGC	4 cut(s)	286, 289, 342, 1118
AclWI	GGATC	1 cut(s)	799
AcoI	YGGCCR	1 cut(s)	1115
AcsI	RAATTY	3 cut(s)	627, 1069, 1373
AcuI	CTGAAG	1 cut(s)	599
AfeI	AGCGCT	1 cut(s)	52
AfiI	CCNNNNNNNGG	4 cut(s)	53, 1018, 1040, 1124
AgsI	TTSAA	1 cut(s)	1279
AluBI	AGCT	5 cut(s)	363, 585, 671, 767, 810
AluI	AGCT	5 cut(s)	363, 585, 671, 767, 810
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	5 cut(s)	151, 177, 506, 656, 747
AlwI	GGATC	1 cut(s)	799
Aor51HI	AGCGCT	1 cut(s)	52
AoxI	GGCC	3 cut(s)	475, 724, 1115
ApeKI	GCWGC	3 cut(s)	89, 671, 1235
ApoI	RAATTY	3 cut(s)	627, 1069, 1373
Asp700I	GAANNNNTTC	1 cut(s)	1283
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	476, 725, 1129
AsuHPI	GGTGA	8 cut(s)	26, 56, 290, 497, 869, 880, 985, 1211
AvaII	GGWCC	1 cut(s)	1129
BauI	CACGAG	1 cut(s)	659
BbsI	GAAGAC	2 cut(s)	261, 930
Bbv12I	GWGCWC	1 cut(s)	660
BbvCI	CCTCAGC	1 cut(s)	942
BbvI	GCAGC	3 cut(s)	76, 658, 1247
BccI	CCATC	4 cut(s)	491, 607, 715, 1204
BceAI	ACGGC	1 cut(s)	223
BclI	TGATCA	3 cut(s)	16, 348, 778
BcoDI	GTCTC	5 cut(s)	151, 177, 506, 656, 747
BfaI	CTAG	6 cut(s)	230, 668, 764, 773, 950, 1305
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	309
BisI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1236
BlsI	GCNGC	5 cut(s)	91, 290, 673, 1119, 1237
Bme18I	GGWCC	1 cut(s)	1129
BmgT120I	GGNCC	3 cut(s)	476, 725, 1129
BmiI	GGNNCC	1 cut(s)	1130
BmsI	GCATC	2 cut(s)	220, 1039
BpiI	GAAGAC	2 cut(s)	261, 930
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
Bpu10I	CCTNAGC	1 cut(s)	942
BpuEI	CTTGAG	1 cut(s)	542
BsaI	GGTCTC	2 cut(s)	506, 747
BsaWI	WCCGGW	1 cut(s)	11
BsaXI	ACNNNNNCTCC	6 cut(s)	865, 895, 978, 1008, 1164, 1194
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 1018, 1040, 1124
Bse1I	ACTGG	4 cut(s)	628, 793, 942, 969
Bse3DI	GCAATG	2 cut(s)	834, 1230
BseGI	GGATG	1 cut(s)	1030
BseLI	CCNNNNNNNGG	4 cut(s)	53, 1018, 1040, 1124
BseMI	GCAATG	2 cut(s)	834, 1230
BseMII	CTCAG	4 cut(s)	209, 738, 933, 1262
BseNI	ACTGG	4 cut(s)	628, 793, 942, 969
BseRI	GAGGAG	5 cut(s)	358, 886, 1031, 1217, 1220
BseXI	GCAGC	3 cut(s)	76, 658, 1247
BsgI	GTGCAG	2 cut(s)	200, 657
BshFI	GGCC	3 cut(s)	477, 726, 1117
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	1142
BslI	CCNNNNNNNGG	4 cut(s)	53, 1018, 1040, 1124
BsmAI	GTCTC	5 cut(s)	151, 177, 506, 656, 747
BsmFI	GGGAC	1 cut(s)	1142
BsmI	GAATGC	1 cut(s)	1283
BsnI	GGCC	3 cut(s)	477, 726, 1117
Bso31I	GGTCTC	2 cut(s)	506, 747
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp143I	GATC	8 cut(s)	16, 198, 348, 471, 489, 778, 791, 1321
BspACI	CCGC	4 cut(s)	286, 289, 342, 1118
BspANI	GGCC	3 cut(s)	477, 726, 1117
BspCNI	CTCAG	4 cut(s)	208, 739, 934, 1263
BspLI	GGNNCC	1 cut(s)	1130
BspMI	ACCTGC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	799
BspQI	GCTCTTC	2 cut(s)	298, 575
BspTNI	GGTCTC	2 cut(s)	506, 747
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	834, 1230
BsrI	ACTGG	4 cut(s)	628, 793, 942, 969
BssMI	GATC	8 cut(s)	16, 198, 348, 471, 489, 778, 791, 1321
BssSI	CACGAG	1 cut(s)	659
Bst2BI	CACGAG	1 cut(s)	659
Bst4CI	ACNGT	3 cut(s)	145, 376, 738
Bst6I	CTCTTC	3 cut(s)	298, 575, 1293
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	4 cut(s)	195, 747, 942, 1271
BstEII	GGTNACC	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	1030
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	8 cut(s)	19, 201, 351, 474, 492, 781, 794, 1324
BstMAI	GTCTC	5 cut(s)	151, 177, 506, 656, 747
BstMBI	GATC	8 cut(s)	16, 198, 348, 471, 489, 778, 791, 1321
BstMWI	GCNNNNNNNGC	1 cut(s)	1310
BstPI	GGTNACC	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	3 cut(s)	76, 658, 1247
BstV2I	GAAGAC	2 cut(s)	261, 930
BstXI	CCANNNNNNTGG	2 cut(s)	537, 1153
BsuRI	GGCC	3 cut(s)	477, 726, 1117
BtsCI	GGATG	1 cut(s)	1030
BtsI	GCAGTG	3 cut(s)	571, 999, 1347
BtsIMutI	CAGTG	6 cut(s)	571, 734, 801, 999, 1268, 1347
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	476, 725, 1129
CviAII	CATG	7 cut(s)	58, 469, 537, 919, 1113, 1124, 1365
DdeI	CTNAG	4 cut(s)	195, 747, 942, 1271
DpnI	GATC	8 cut(s)	18, 200, 350, 473, 491, 780, 793, 1323
DpnII	GATC	8 cut(s)	16, 198, 348, 471, 489, 778, 791, 1321
DrdI	GACNNNNNNGTC	1 cut(s)	829
DseDI	GACNNNNNNGTC	1 cut(s)	829
EaeI	YGGCCR	1 cut(s)	1115
Eam1104I	CTCTTC	3 cut(s)	298, 575, 1293
EarI	CTCTTC	3 cut(s)	298, 575, 1293
Eco31I	GGTCTC	2 cut(s)	506, 747
Eco47I	GGWCC	1 cut(s)	1129
Eco47III	AGCGCT	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	599
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EcoRI	GAATTC	2 cut(s)	627, 1069
FaeI	CATG	7 cut(s)	61, 472, 540, 922, 1116, 1127, 1368
FaqI	GGGAC	1 cut(s)	1142
FatI	CATG	7 cut(s)	57, 468, 536, 918, 1112, 1123, 1364
FauI	CCCGC	1 cut(s)	293
FauNDI	CATATG	1 cut(s)	643
FbaI	TGATCA	3 cut(s)	16, 348, 778
Fnu4HI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1236
FokI	GGATG	1 cut(s)	1017
Fsp4HI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1236
FspBI	CTAG	6 cut(s)	230, 668, 764, 773, 950, 1305
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1236
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	477, 726, 1117
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	7 cut(s)	61, 472, 540, 922, 1116, 1127, 1368
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	4 cut(s)	282, 444, 621, 916
HindII	GTYRAC	4 cut(s)	282, 444, 621, 916
HinfI	GANTC	7 cut(s)	8, 84, 158, 392, 541, 617, 1265
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	8 cut(s)	26, 56, 290, 497, 869, 880, 985, 1211
Hpy166II	GTNNAC	5 cut(s)	183, 282, 444, 621, 916
Hpy188I	TCNGA	8 cut(s)	7, 48, 198, 253, 579, 633, 748, 848
Hpy8I	GTNNAC	5 cut(s)	183, 282, 444, 621, 916
Hpy99I	CGWCG	1 cut(s)	932
HpyAV	CCTTC	8 cut(s)	53, 85, 89, 199, 233, 469, 970, 1363
HpyCH4III	ACNGT	3 cut(s)	145, 376, 738
HpyCH4V	TGCA	8 cut(s)	155, 217, 674, 719, 741, 827, 1037, 1235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1310
HpyF3I	CTNAG	4 cut(s)	195, 747, 942, 1271
Hsp92II	CATG	7 cut(s)	61, 472, 540, 922, 1116, 1127, 1368
HspAI	GCGC	1 cut(s)	51
Ksp22I	TGATCA	3 cut(s)	16, 348, 778
Kzo9I	GATC	8 cut(s)	16, 198, 348, 471, 489, 778, 791, 1321
LguI	GCTCTTC	2 cut(s)	298, 575
LmnI	GCTCC	2 cut(s)	309, 838
Lsp1109I	GCAGC	3 cut(s)	76, 658, 1247
LweI	GCATC	2 cut(s)	220, 1039
MaeI	CTAG	6 cut(s)	230, 668, 764, 773, 950, 1305
MaeIII	GTNAC	3 cut(s)	62, 118, 960
MalI	GATC	8 cut(s)	18, 200, 350, 473, 491, 780, 793, 1323
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	8 cut(s)	16, 198, 348, 471, 489, 778, 791, 1321
MboII	GAAGA	9 cut(s)	266, 285, 312, 412, 566, 592, 935, 1009, 1310
MfeI	CAATTG	3 cut(s)	714, 720, 1038
MhlI	GDGCHC	1 cut(s)	660
MlyI	GAGTC	3 cut(s)	78, 626, 1259
MmeI	TCCRAC	1 cut(s)	1046
MroXI	GAANNNNTTC	1 cut(s)	1283
MseI	TTAA	7 cut(s)	695, 1052, 1182, 1245, 1293, 1359, 1387
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	1 cut(s)	12
MunI	CAATTG	3 cut(s)	714, 720, 1038
Mva1269I	GAATGC	1 cut(s)	1283
MwoI	GCNNNNNNNGC	1 cut(s)	1310
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	8 cut(s)	16, 198, 348, 471, 489, 778, 791, 1321
NlaIII	CATG	7 cut(s)	61, 472, 540, 922, 1116, 1127, 1368
NlaIV	GGNNCC	1 cut(s)	1130
NmuCI	GTSAC	2 cut(s)	62, 118
PaqCI	CACCTGC	1 cut(s)	309
PciSI	GCTCTTC	2 cut(s)	298, 575
PctI	GAATGC	1 cut(s)	1283
PdmI	GAANNNNTTC	1 cut(s)	1283
PfeI	GAWTC	4 cut(s)	8, 158, 392, 541
PkrI	GCNGC	5 cut(s)	91, 290, 673, 1119, 1237
PleI	GAGTC	3 cut(s)	78, 625, 1259
PpsI	GAGTC	3 cut(s)	78, 625, 1259
PspEI	GGTNACC	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	1130
PspPI	GGNCC	3 cut(s)	476, 725, 1129
RseI	CAYNNNNRTG	1 cut(s)	356
SapI	GCTCTTC	2 cut(s)	298, 575
SaqAI	TTAA	7 cut(s)	695, 1052, 1182, 1245, 1293, 1359, 1387
SatI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1236
Sau3AI	GATC	8 cut(s)	16, 198, 348, 471, 489, 778, 791, 1321
Sau96I	GGNCC	3 cut(s)	476, 725, 1129
SchI	GAGTC	3 cut(s)	78, 626, 1259
SduI	GDGCHC	1 cut(s)	660
SfaNI	GCATC	2 cut(s)	220, 1039
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	1129
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
SsiI	CCGC	4 cut(s)	286, 289, 342, 1118
SspI	AATATT	1 cut(s)	1107
SspMI	CTAG	6 cut(s)	230, 668, 764, 773, 950, 1305
TaaI	ACNGT	3 cut(s)	145, 376, 738
TaqI	TCGA	2 cut(s)	82, 1378
TauI	GCSGC	2 cut(s)	291, 1120
TfiI	GAWTC	4 cut(s)	8, 158, 392, 541
Tru1I	TTAA	7 cut(s)	695, 1052, 1182, 1245, 1293, 1359, 1387
Tru9I	TTAA	7 cut(s)	695, 1052, 1182, 1245, 1293, 1359, 1387
TscAI	CASTG	6 cut(s)	571, 741, 801, 999, 1275, 1354
TseFI	GTSAC	2 cut(s)	62, 118
TseI	GCWGC	3 cut(s)	89, 671, 1235
Tsp45I	GTSAC	2 cut(s)	62, 118
TspDTI	ATGAA	3 cut(s)	20, 115, 580
TspRI	CASTG	6 cut(s)	571, 741, 801, 999, 1275, 1354
VpaK11BI	GGWCC	1 cut(s)	1129
XapI	RAATTY	3 cut(s)	627, 1069, 1373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1110
XmnI	GAANNNNTTC	1 cut(s)	1283
XspI	CTAG	6 cut(s)	230, 668, 764, 773, 950, 1305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.