Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8237817.1

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 731

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8237817.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 724 bp

atgctcggcccacaccgagaaatcaaagatggtctcgaagtttcaggtttagagccaataccaaaagcatggattcctccaccacttctcaaggacggcaacaatctcctgaagagctttttcacagagaatggcaagaaaatgacggagtcgactggaattctgatcaacacattcgagagtatagaacatgagacagtggctgcactaaatgagggcagggtattaaaagggctaccatcggcaattgccattggaccacttccaccatgtaactctgagacagaccatcaactagcatggctagatgatcaaccaactggatcagtgttctatgtcagctttgggagtaggactgcaatgtcaaggaagcaaatcagagagttgggtgagggcttggtgaggagtgggtgtaggtttctgtgggtcgtgaaggataaaaaagttgacatggaagacgatgagaaactgactgaggtgcttggacagggtttactggaaagagtgaaggaaaagggattggcagtgaagaagtggctgaaccaagaggaggtattgaggcatcctgcaatcgctggctttttaagtcattgtggctggaattccttgagtgaggctctgtggaacggtgtggccgtattagcatggccgcaacatggggaccagaaaatcaatgccgacttggtggagagaattgggctgggagtgtgggttaagagttggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

241

Amino Acids

26.75

Weight (kDa)

5.91

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	1 cut(s)	650
AclWI	GGATC	1 cut(s)	331
AcoI	YGGCCR	2 cut(s)	633, 647
AcsI	RAATTY	2 cut(s)	159, 601
AcuI	CTGAAG	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	550, 656
AluBI	AGCT	2 cut(s)	117, 342
AluI	AGCT	2 cut(s)	117, 342
Alw26I	GTCTC	3 cut(s)	38, 188, 275
AlwI	GGATC	1 cut(s)	331
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	3 cut(s)	7, 633, 647
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	2 cut(s)	159, 601
AspS9I	GGNCC	3 cut(s)	8, 257, 661
AsuHPI	GGTGA	2 cut(s)	401, 412
AvaII	GGWCC	2 cut(s)	257, 661
BbsI	GAAGAC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	3 cut(s)	23, 247, 297
BceAI	ACGGC	2 cut(s)	112, 620
BclI	TGATCA	2 cut(s)	165, 310
BcoDI	GTCTC	3 cut(s)	38, 188, 275
BfaI	CTAG	2 cut(s)	296, 305
BisI	GCNGC	2 cut(s)	204, 650
BlsI	GCNGC	2 cut(s)	205, 651
Bme18I	GGWCC	2 cut(s)	257, 661
BmgT120I	GGNCC	3 cut(s)	8, 257, 661
BmiI	GGNNCC	1 cut(s)	662
BmsI	GCATC	1 cut(s)	571
BpiI	GAAGAC	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	601, 633
BpuEI	CTTGAG	2 cut(s)	74, 628
BsaI	GGTCTC	1 cut(s)	38
BsaXI	ACNNNNNCTCC	3 cut(s)	397, 427, 696
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 656
Bse1I	ACTGG	3 cut(s)	160, 325, 501
Bse3DI	GCAATG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	2 cut(s)	550, 656
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	270, 465
BseNI	ACTGG	3 cut(s)	160, 325, 501
BseRI	GAGGAG	2 cut(s)	418, 563
BseXI	GCAGC	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	700
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	9, 635, 649
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	2 cut(s)	550, 656
BsmAI	GTCTC	3 cut(s)	38, 188, 275
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	3 cut(s)	9, 635, 649
Bso31I	GGTCTC	1 cut(s)	38
Bsp143I	GATC	3 cut(s)	165, 310, 323
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	3 cut(s)	9, 635, 649
BspCNI	CTCAG	2 cut(s)	271, 466
BspLI	GGNNCC	1 cut(s)	662
BspPI	GGATC	1 cut(s)	331
BspQI	GCTCTTC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	3 cut(s)	160, 325, 501
BssMI	GATC	3 cut(s)	165, 310, 323
Bst4CI	ACNGT	2 cut(s)	199, 629
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	2 cut(s)	279, 474
BstF5I	GGATG	1 cut(s)	562
BstKTI	GATC	3 cut(s)	168, 313, 326
BstMAI	GTCTC	3 cut(s)	38, 188, 275
BstMBI	GATC	3 cut(s)	165, 310, 323
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	462
BstXI	CCANNNNNNTGG	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	9, 635, 649
BtsCI	GGATG	1 cut(s)	562
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	3 cut(s)	204, 333, 531
Cac8I	GCNNGC	1 cut(s)	577
CaiI	CAGNNNCTG	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	8, 257, 661
CviAII	CATG	7 cut(s)	69, 191, 270, 300, 451, 645, 656
DdeI	CTNAG	2 cut(s)	279, 474
DpnI	GATC	3 cut(s)	167, 312, 325
DpnII	GATC	3 cut(s)	165, 310, 323
DrdI	GACNNNNNNGTC	1 cut(s)	361
DseDI	GACNNNNNNGTC	1 cut(s)	361
EaeI	YGGCCR	2 cut(s)	633, 647
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	257, 661
Eco57I	CTGAAG	1 cut(s)	131
EcoRI	GAATTC	2 cut(s)	159, 601
FaeI	CATG	7 cut(s)	72, 194, 273, 303, 454, 648, 659
FaiI	YATR	9 cut(s)	70, 185, 192, 271, 301, 336, 452, 646, 657
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	7 cut(s)	68, 190, 269, 299, 450, 644, 655
FbaI	TGATCA	2 cut(s)	165, 310
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	2 cut(s)	204, 650
FokI	GGATG	1 cut(s)	549
Fsp4HI	GCNGC	2 cut(s)	204, 650
FspBI	CTAG	2 cut(s)	296, 305
GluI	GCNGC	2 cut(s)	204, 650
GsaI	CCCAGC	1 cut(s)	704
HaeIII	GGCC	3 cut(s)	9, 635, 649
Hin1II	CATG	7 cut(s)	72, 194, 273, 303, 454, 648, 659
HincII	GTYRAC	2 cut(s)	153, 448
HindII	GTYRAC	2 cut(s)	153, 448
HinfI	GANTC	2 cut(s)	73, 149
HphI	GGTGA	2 cut(s)	401, 412
Hpy166II	GTNNAC	3 cut(s)	153, 448, 494
Hpy188I	TCNGA	3 cut(s)	165, 280, 380
Hpy188III	TCNNGA	4 cut(s)	35, 109, 178, 430
Hpy8I	GTNNAC	3 cut(s)	153, 448, 494
HpyAV	CCTTC	2 cut(s)	427, 502
HpyCH4III	ACNGT	2 cut(s)	199, 629
HpyCH4V	TGCA	3 cut(s)	206, 359, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	2 cut(s)	279, 474
Hsp92II	CATG	7 cut(s)	72, 194, 273, 303, 454, 648, 659
Ksp22I	TGATCA	2 cut(s)	165, 310
Kzo9I	GATC	3 cut(s)	165, 310, 323
LguI	GCTCTTC	1 cut(s)	107
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	2 cut(s)	296, 305
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	3 cut(s)	167, 312, 325
MboI	GATC	3 cut(s)	165, 310, 323
MboII	GAAGA	3 cut(s)	124, 467, 541
MfeI	CAATTG	1 cut(s)	246
MluCI	AATT	4 cut(s)	159, 246, 601, 693
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	9 cut(s)	87, 208, 385, 396, 469, 541, 544, 552, 607
MseI	TTAA	3 cut(s)	227, 584, 714
MunI	CAATTG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	641
NdeII	GATC	3 cut(s)	165, 310, 323
NlaIII	CATG	7 cut(s)	72, 194, 273, 303, 454, 648, 659
NlaIV	GGNNCC	1 cut(s)	662
PciSI	GCTCTTC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	73
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	205, 651
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	700
PspN4I	GGNNCC	1 cut(s)	662
PspPI	GGNCC	3 cut(s)	8, 257, 661
PstNI	CAGNNNCTG	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	148
SalI	GTCGAC	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	227, 584, 714
SatI	GCNGC	2 cut(s)	204, 650
Sau3AI	GATC	3 cut(s)	165, 310, 323
Sau96I	GGNCC	3 cut(s)	8, 257, 661
SchI	GAGTC	1 cut(s)	158
SetI	ASST	6 cut(s)	49, 119, 344, 419, 480, 555
SfaNI	GCATC	1 cut(s)	571
SinI	GGWCC	2 cut(s)	257, 661
SmlI	CTYRAG	2 cut(s)	89, 607
SmoI	CTYRAG	2 cut(s)	89, 607
Sse9I	AATT	4 cut(s)	159, 246, 601, 693
SsiI	CCGC	1 cut(s)	650
SspMI	CTAG	2 cut(s)	296, 305
TaaI	ACNGT	2 cut(s)	199, 629
TaqI	TCGA	3 cut(s)	36, 152, 177
TasI	AATT	4 cut(s)	159, 246, 601, 693
TauI	GCSGC	1 cut(s)	652
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	3 cut(s)	227, 584, 714
Tru9I	TTAA	3 cut(s)	227, 584, 714
TscAI	CASTG	3 cut(s)	204, 333, 531
TseI	GCWGC	1 cut(s)	203
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	3 cut(s)	204, 333, 531
Tth111I	GACNNNGTC	1 cut(s)	148
VpaK11BI	GGWCC	2 cut(s)	257, 661
XapI	RAATTY	2 cut(s)	159, 601
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	2 cut(s)	296, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.