Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Reverse (-)

4399043 .. 4399786

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1055500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAAAAACGGAAGATTATTAGATTATTAATCAGGCTTACTAACTTGTACACAAATACGTCAGTAATTTCCATCGGACCGCTAGCGCCATGTTTCTTCGAGACAAGCCAACAACTGCAATGGCTTAATGATCAAGCAACTGGGTCAGTGCTCTATGTCAGCTTTGGGAGCAGGACTGCCATGTCCAGGGAGCAAATTAGAGAGTTGGGTGATGGCTTGGTGAGGAGCGGTTGCAGGTTTCTGTGGGCGGTGAAGGATAAGAAAGTTGACATCGAAGATGATGAGAAACTGACTGAGGTGCTTGGAGAGGAATTATTGGAGAGGGTGAAGAAAAATGGATTGGCAGTGAAGAACTGGCTGAACCAGGAGGAGATATTGAGCCATCCGGCCATCGGTGGGTTTTTAAGTCACTGTGGCTGGAACTCTTTGTCTGAGGCTCTCTGGAACGGTGTGCGCATATTAGCATGGCCGCAACATGGGGATCAGAAAGTCAATGCGGATTTGGTGGAGAGAATTGGACTCGGAACGTGGGATAAGAGTTGGGGTTGGGGTGATAGGGAGACGGTGGTGAAAGCAGAGGACATTGCACAGACGGTTAGTGAGGTAATGGGAAACGATTTGTTGAAGTTGCAAGCATTGCACATTAGAGACGAGGCTAGAAGGGCGGTTGGAGATGACGGTAGTTCTACAAAGAGTCTCGCTGCTCTCATCGACACATGGAAGAAGTTTCAGGTACTACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

248

Amino Acids

27.78

Weight (kDa)

6.45

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	46 - 175	4.8e-17	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	181
Acc16I	TGCGCA	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	225
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	6 cut(s)	80, 228, 248, 470, 497, 665
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	2 cut(s)	387, 467
AfaI	GTAC	2 cut(s)	50, 735
AfiI	CCNNNNNNNGG	4 cut(s)	186, 392, 396, 476
AgsI	TTSAA	1 cut(s)	625
AjnI	CCWGG	2 cut(s)	185, 363
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	4 cut(s)	95, 554, 642, 701
AlwI	GGATC	1 cut(s)	489
AoxI	GGCC	2 cut(s)	387, 467
ApeKI	GCWGC	1 cut(s)	701
AseI	ATTAAT	1 cut(s)	29
AspLEI	GCGC	2 cut(s)	88, 456
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	6 cut(s)	221, 232, 262, 337, 563, 580
AsuNHI	GCTAGC	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	4 cut(s)	80, 206, 390, 398
BciT130I	CCWGG	2 cut(s)	187, 365
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	4 cut(s)	95, 554, 642, 701
BfaI	CTAG	2 cut(s)	83, 657
BfoI	RGCGCY	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	225
BisI	GCNGC	2 cut(s)	470, 702
BlsI	GCNGC	2 cut(s)	471, 703
Bme1390I	CCNGG	2 cut(s)	187, 365
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmrFI	CCNGG	2 cut(s)	187, 365
BmrI	ACTGGG	1 cut(s)	150
BmtI	GCTAGC	1 cut(s)	86
BmuI	ACTGGG	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	4 cut(s)	186, 392, 396, 476
Bse1I	ACTGG	2 cut(s)	145, 359
Bse3DI	GCAATG	3 cut(s)	125, 582, 635
BseBI	CCWGG	2 cut(s)	187, 365
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	4 cut(s)	186, 392, 396, 476
BseMI	GCAATG	3 cut(s)	125, 582, 635
BseMII	CTCAG	2 cut(s)	285, 423
BseNI	ACTGG	2 cut(s)	145, 359
BseRI	GAGGAG	2 cut(s)	238, 383
BseXI	GCAGC	1 cut(s)	688
BshFI	GGCC	2 cut(s)	389, 469
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	386
BslI	CCNNNNNNNGG	4 cut(s)	186, 392, 396, 476
BsmAI	GTCTC	4 cut(s)	95, 554, 642, 701
BsmBI	CGTCTC	2 cut(s)	554, 642
BsnI	GGCC	2 cut(s)	389, 469
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	130, 481
BspACI	CCGC	6 cut(s)	80, 228, 248, 470, 497, 665
BspANI	GGCC	2 cut(s)	389, 469
BspCNI	CTCAG	2 cut(s)	286, 424
BspMI	ACCTGC	1 cut(s)	225
BspOI	GCTAGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	489
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	3 cut(s)	125, 582, 635
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	145, 359
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	130, 481
Bst2UI	CCWGG	2 cut(s)	187, 365
Bst4CI	ACNGT	5 cut(s)	413, 449, 565, 595, 680
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	84, 633
BstDEI	CTNAG	2 cut(s)	294, 432
BstF5I	GGATG	1 cut(s)	382
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	2 cut(s)	88, 456
BstKTI	GATC	2 cut(s)	133, 484
BstMAI	GTCTC	4 cut(s)	95, 554, 642, 701
BstMBI	GATC	2 cut(s)	130, 481
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 637, 662
BstNI	CCWGG	2 cut(s)	187, 365
BstSCI	CCNGG	2 cut(s)	185, 363
BstV1I	GCAGC	1 cut(s)	688
BsuRI	GGCC	2 cut(s)	389, 469
BtsCI	GGATG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	153, 351, 409
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	84, 633
CfoI	GCGC	2 cut(s)	88, 456
Cfr13I	GGNCC	1 cut(s)	77
CpoI	CGGWCCG	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	49, 734
CspI	CGGWCCG	1 cut(s)	77
CviAII	CATG	5 cut(s)	90, 181, 465, 476, 717
CviQI	GTAC	2 cut(s)	49, 734
DdeI	CTNAG	2 cut(s)	294, 432
DpnI	GATC	2 cut(s)	132, 483
DpnII	GATC	2 cut(s)	130, 481
DrdI	GACNNNNNNGTC	1 cut(s)	181
DseDI	GACNNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	2 cut(s)	387, 467
Eco47I	GGWCC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	185, 363
Esp3I	CGTCTC	2 cut(s)	554, 642
FaeI	CATG	5 cut(s)	93, 184, 468, 479, 720
FaiI	YATR	8 cut(s)	91, 156, 182, 458, 466, 477, 718, 742
FatI	CATG	5 cut(s)	89, 180, 464, 475, 716
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	470, 702
FokI	GGATG	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	470, 702
FspAI	RTGCGCAY	1 cut(s)	455
FspBI	CTAG	2 cut(s)	83, 657
FspI	TGCGCA	1 cut(s)	455
GlaI	GCGC	2 cut(s)	87, 455
GluI	GCNGC	2 cut(s)	470, 702
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	389, 469
HapII	CCGG	1 cut(s)	386
HhaI	GCGC	2 cut(s)	88, 456
Hin1II	CATG	5 cut(s)	93, 184, 468, 479, 720
Hin6I	GCGC	2 cut(s)	86, 454
HinP1I	GCGC	2 cut(s)	86, 454
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	2 cut(s)	519, 694
HpaII	CCGG	1 cut(s)	386
HphI	GGTGA	6 cut(s)	221, 232, 262, 337, 563, 580
Hpy166II	GTNNAC	2 cut(s)	51, 268
Hpy188I	TCNGA	4 cut(s)	77, 433, 486, 524
Hpy188III	TCNNGA	2 cut(s)	100, 442
Hpy8I	GTNNAC	2 cut(s)	51, 268
HpyAV	CCTTC	2 cut(s)	247, 654
HpyCH4III	ACNGT	5 cut(s)	413, 449, 565, 595, 680
HpyCH4IV	ACGT	2 cut(s)	59, 527
HpyCH4V	TGCA	5 cut(s)	118, 234, 587, 631, 640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 637, 662
HpyF3I	CTNAG	2 cut(s)	294, 432
HpySE526I	ACGT	2 cut(s)	59, 527
Hsp92II	CATG	5 cut(s)	93, 184, 468, 479, 720
HspAI	GCGC	2 cut(s)	86, 454
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	130, 481
LmnI	GCTCC	3 cut(s)	168, 190, 225
Lsp1109I	GCAGC	1 cut(s)	688
MaeI	CTAG	2 cut(s)	83, 657
MaeII	ACGT	2 cut(s)	59, 527
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	2 cut(s)	132, 483
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	2 cut(s)	130, 481
MboII	GAAGA	6 cut(s)	25, 88, 287, 340, 361, 733
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	4 cut(s)	66, 195, 311, 513
MlyI	GAGTC	2 cut(s)	513, 703
MmeI	TCCRAC	1 cut(s)	649
MnlI	CCTC	9 cut(s)	216, 289, 301, 315, 361, 427, 571, 595, 646
MseI	TTAA	3 cut(s)	29, 126, 404
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	2 cut(s)	187, 365
MvaI	CCWGG	2 cut(s)	187, 365
MwoI	GCNNNNNNNGC	3 cut(s)	168, 637, 662
NdeII	GATC	2 cut(s)	130, 481
NheI	GCTAGC	1 cut(s)	82
NlaIII	CATG	5 cut(s)	93, 184, 468, 479, 720
NmuCI	GTSAC	1 cut(s)	407
NsbI	TGCGCA	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	471, 703
PleI	GAGTC	2 cut(s)	513, 702
PpsI	GAGTC	2 cut(s)	513, 702
PshBI	ATTAAT	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	185, 363
PspGI	CCWGG	2 cut(s)	185, 363
PspPI	GGNCC	1 cut(s)	77
RsaI	GTAC	2 cut(s)	50, 735
RsaNI	GTAC	2 cut(s)	49, 734
Rsr2I	CGGWCCG	1 cut(s)	77
RsrII	CGGWCCG	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	29, 126, 404
SatI	GCNGC	2 cut(s)	470, 702
Sau3AI	GATC	2 cut(s)	130, 481
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	2 cut(s)	513, 703
ScrFI	CCNGG	2 cut(s)	187, 365
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	7 cut(s)	62, 164, 239, 300, 530, 606, 735
SinI	GGWCC	1 cut(s)	77
Sse9I	AATT	4 cut(s)	66, 195, 311, 513
SsiI	CCGC	6 cut(s)	80, 228, 248, 470, 497, 665
SspMI	CTAG	2 cut(s)	83, 657
StyD4I	CCNGG	2 cut(s)	185, 363
TaaI	ACNGT	5 cut(s)	413, 449, 565, 595, 680
TaiI	ACGT	2 cut(s)	62, 530
TaqI	TCGA	3 cut(s)	99, 273, 711
TasI	AATT	4 cut(s)	66, 195, 311, 513
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	472
Tru1I	TTAA	3 cut(s)	29, 126, 404
Tru9I	TTAA	3 cut(s)	29, 126, 404
TscAI	CASTG	3 cut(s)	153, 351, 416
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	701
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	3 cut(s)	153, 351, 416
VpaK11BI	GGWCC	1 cut(s)	77
VspI	ATTAAT	1 cut(s)	29
XspI	CTAG	2 cut(s)	83, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.