Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002505.1

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

69977 .. 70285

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002505.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgcgcttcctcatgtcatcagaatgcggtaacgtcctcctccggcgagcccaggctcatgtcgttctcctcccaagcgccggcatgggccatctgacacccttgctacgacttgccgcattgctatcccaaaaccaccgctgccagctgaccctcatcaccacccaccccactgtctcagtcgccgagtcttctctcatctctcgcttcctctctgccttccctcacgtcactcaaatccatttccacctccttcctctcgaccccaccaccgtcaactcaaccgacccctttaaaatggatacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

102

Amino Acids

11.27

Weight (kDa)

8.94

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	27, 117, 139
AfiI	CCNNNNNNNGG	1 cut(s)	80
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	141
AspLEI	GCGC	2 cut(s)	6, 80
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	181
BfoI	RGCGCY	1 cut(s)	81
BfuI	GTATCC	1 cut(s)	295
BisI	GCNGC	2 cut(s)	117, 142
BlsI	GCNGC	2 cut(s)	118, 143
Bme1390I	CCNGG	1 cut(s)	53
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	2 cut(s)	29, 59
BseXI	GCAGC	1 cut(s)	128
BshFI	GGCC	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	43, 81
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	52
BspACI	CCGC	3 cut(s)	27, 117, 139
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	175, 274
BstC8I	GCNNGC	3 cut(s)	48, 82, 146
BstDEI	CTNAG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	2 cut(s)	6, 80
BstMAI	GTCTC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	48, 82, 146
CfoI	GCGC	2 cut(s)	6, 80
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	88
CviAII	CATG	3 cut(s)	13, 59, 85
CviJI	RGCY	4 cut(s)	50, 56, 90, 148
CviKI_1	RGCY	4 cut(s)	50, 56, 90, 148
DdeI	CTNAG	1 cut(s)	178
DraI	TTTAAA	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	52
FaeI	CATG	3 cut(s)	16, 62, 88
FaiI	YATR	3 cut(s)	14, 60, 86
FatI	CATG	3 cut(s)	12, 58, 84
Fnu4HI	GCNGC	2 cut(s)	117, 142
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	2 cut(s)	117, 142
GlaI	GCGC	2 cut(s)	5, 79
GluI	GCNGC	2 cut(s)	117, 142
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	2 cut(s)	43, 81
HhaI	GCGC	2 cut(s)	6, 80
Hin1II	CATG	3 cut(s)	16, 62, 88
Hin6I	GCGC	2 cut(s)	4, 78
HinP1I	GCGC	2 cut(s)	4, 78
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	2 cut(s)	43, 81
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	2 cut(s)	22, 96
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	2 cut(s)	229, 263
HpyCH4III	ACNGT	2 cut(s)	175, 274
HpyCH4IV	ACGT	2 cut(s)	33, 228
HpyF3I	CTNAG	1 cut(s)	178
HpySE526I	ACGT	2 cut(s)	33, 228
Hsp92II	CATG	3 cut(s)	16, 62, 88
HspAI	GCGC	2 cut(s)	4, 78
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	38, 56, 65, 94, 158
Lsp1109I	GCAGC	1 cut(s)	128
MaeII	ACGT	2 cut(s)	33, 228
MaeIII	GTNAC	2 cut(s)	29, 229
MboII	GAAGA	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	52
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	9 cut(s)	20, 47, 50, 80, 164, 221, 234, 260, 267
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	22
MspA1I	CMGCKG	2 cut(s)	141, 148
MspI	CCGG	2 cut(s)	43, 81
MspR9I	CCNGG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	53
NaeI	GCCGGC	1 cut(s)	82
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	3 cut(s)	16, 62, 88
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	229
PctI	GAATGC	1 cut(s)	29
PdiI	GCCGGC	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	118, 143
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	117, 142
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	4 cut(s)	36, 150, 231, 252
SmiMI	CAYNNNNRTG	1 cut(s)	22
SsiI	CCGC	3 cut(s)	27, 117, 139
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	175, 274
TaiI	ACGT	2 cut(s)	36, 231
TaqI	TCGA	1 cut(s)	261
TauI	GCSGC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	229
TspRI	CASTG	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.